Wall clock time and date at job start Mon Mar 30 2020 07:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76196 * 102.99912 * 2 1 4 4 C 1.39180 * 120.08238 * 276.00415 * 3 2 1 5 5 F 1.35099 * 120.06426 * 0.02562 * 4 3 2 6 6 C 1.38222 * 119.88288 * 180.31949 * 4 3 2 7 7 C 1.38355 * 120.05190 * 359.69820 * 6 4 3 8 8 C 1.38243 * 120.17083 * 0.02562 * 7 6 4 9 9 C 1.38172 * 120.11848 * 0.02562 * 8 7 6 10 10 C 1.50708 * 120.02853 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.47161 * 174.60178 * 10 9 8 12 12 C 1.50704 * 109.46882 * 294.59902 * 10 9 8 13 13 H 1.08001 * 119.99682 * 0.02562 * 12 10 9 14 14 C 1.37875 * 119.99656 * 179.97438 * 12 10 9 15 15 N 1.31507 * 120.00421 * 359.73223 * 14 12 10 16 16 Si 1.86799 * 119.99583 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47361 * 269.72628 * 16 14 12 18 18 H 1.48499 * 109.47473 * 29.73221 * 16 14 12 19 19 H 1.48499 * 109.46966 * 149.72919 * 16 14 12 20 20 C 1.52997 * 109.46953 * 54.59922 * 10 9 8 21 21 C 1.53003 * 117.49732 * 122.31478 * 20 10 9 22 22 C 1.53000 * 117.50201 * 53.65095 * 20 10 9 23 23 H 1.09004 * 109.46699 * 174.77400 * 1 2 3 24 24 H 1.08993 * 109.47195 * 294.77371 * 1 2 3 25 25 H 1.08993 * 109.47191 * 54.77879 * 1 2 3 26 26 H 1.08000 * 119.97590 * 179.72268 * 6 4 3 27 27 H 1.07995 * 119.91544 * 179.97438 * 7 6 4 28 28 H 1.08004 * 119.94304 * 179.97438 * 8 7 6 29 29 H 0.97004 * 120.00012 * 0.27033 * 15 14 12 30 30 H 1.09009 * 115.54922 * 267.97926 * 20 10 9 31 31 H 1.08996 * 117.50099 * 359.97438 * 21 20 10 32 32 H 1.08999 * 117.49738 * 145.01839 * 21 20 10 33 33 H 1.08994 * 117.50188 * 214.97847 * 22 20 10 34 34 H 1.09000 * 117.49862 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 2.2445 2.4249 -1.1977 5 9 1.9733 1.7973 -2.3630 6 6 2.5624 3.7701 -1.1936 7 6 2.8400 4.4128 -0.0003 8 6 2.8011 3.7129 1.1912 9 6 2.4852 2.3678 1.1952 10 6 2.4439 1.6066 2.4953 11 1 2.0864 0.5935 2.3119 12 6 3.8279 1.5512 3.0890 13 1 4.6546 2.0205 2.5764 14 6 4.0386 0.9021 4.2871 15 7 3.0309 0.3361 4.9144 16 14 5.7542 0.8328 5.0226 17 1 6.4540 -0.3820 4.5330 18 1 6.5164 2.0408 4.6162 19 1 5.6563 0.7844 6.5036 20 6 1.4988 2.3125 3.4697 21 6 0.3244 1.5044 4.0252 22 6 0.0758 2.6030 2.9885 23 1 -0.3633 -1.0235 -0.0936 24 1 -0.3633 0.4306 0.9330 25 1 -0.3633 0.5926 -0.8395 26 1 2.5937 4.3199 -2.1227 27 1 3.0885 5.4638 0.0003 28 1 3.0188 4.2182 2.1206 29 1 2.1400 0.3717 4.5322 30 1 1.9652 3.0425 4.1314 31 1 0.2247 0.4701 3.6961 32 1 0.0178 1.7030 5.0521 33 1 -0.3941 3.5238 3.3338 34 1 -0.1870 2.2916 1.9775 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260499654.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:51 Heat of formation + Delta-G solvation = -16.743727 kcal Electronic energy + Delta-G solvation = -18355.886943 eV Core-core repulsion = 15487.342583 eV Total energy + Delta-G solvation = -2868.544360 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.96076 -40.45143 -38.27134 -34.78203 -32.92061 -31.60039 -29.79479 -28.69350 -25.36610 -23.92814 -23.48150 -23.01270 -21.00328 -19.09221 -18.48629 -17.70060 -17.40033 -16.72326 -16.33361 -16.10508 -15.65310 -15.24061 -15.06800 -14.82886 -14.43086 -14.24032 -13.96868 -13.80821 -13.27125 -12.87676 -12.85430 -12.65752 -12.40346 -12.16621 -11.93002 -11.81705 -11.37319 -11.36771 -10.85282 -10.54711 -10.30196 -9.75846 -9.53400 -8.60839 -8.40384 -6.18036 -0.11828 0.29136 0.75119 1.55784 1.62584 1.68334 1.79693 2.57453 2.69481 3.02523 3.20156 3.32866 3.82134 3.96678 4.11500 4.18414 4.20552 4.22869 4.25665 4.33143 4.40926 4.65036 4.75157 4.77908 4.88172 5.03354 5.08284 5.11306 5.23983 5.25224 5.39531 5.50565 5.86397 5.91253 6.16857 6.37332 6.84252 7.60576 9.00048 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018484 B = 0.007973 C = 0.007451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.432157 B = 3510.953798 C = 3756.915498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.183 6.183 3 C -0.183 4.183 4 C 0.120 3.880 5 F -0.135 7.135 6 C -0.172 4.172 7 C -0.056 4.056 8 C -0.139 4.139 9 C 0.026 3.974 10 C 0.080 3.920 11 H 0.038 0.962 12 C -0.599 4.599 13 H 0.036 0.964 14 C -0.017 4.017 15 N -0.938 5.938 16 Si 1.104 2.896 17 H -0.283 1.283 18 H -0.275 1.275 19 H -0.284 1.284 20 C -0.122 4.122 21 C -0.174 4.174 22 C -0.171 4.171 23 H 0.122 0.878 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.168 0.832 27 H 0.173 0.827 28 H 0.128 0.872 29 H 0.282 0.718 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.230 7.128 -9.552 13.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S 0.049 5.951 3 C -0.295 4.295 4 C 0.098 3.902 5 F -0.113 7.113 6 C -0.192 4.192 7 C -0.074 4.074 8 C -0.159 4.159 9 C 0.023 3.977 10 C 0.061 3.939 11 H 0.055 0.945 12 C -0.637 4.637 13 H 0.054 0.946 14 C -0.218 4.218 15 N -0.576 5.576 16 Si 0.928 3.072 17 H -0.210 1.210 18 H -0.200 1.200 19 H -0.210 1.210 20 C -0.141 4.141 21 C -0.211 4.211 22 C -0.208 4.208 23 H 0.140 0.860 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.186 0.814 27 H 0.190 0.810 28 H 0.146 0.854 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.122 0.878 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.743 5.582 -8.323 10.697 hybrid contribution -1.565 1.102 -1.197 2.257 sum -5.308 6.684 -9.519 12.786 Atomic orbital electron populations 1.23603 0.92649 1.07633 1.05166 1.85521 1.09142 1.03459 1.96982 1.21718 1.14979 0.97921 0.94915 1.17964 1.00194 0.91849 0.80189 1.91473 1.91168 1.82932 1.45768 1.21328 1.05000 0.91588 1.01319 1.21528 0.94210 1.01479 0.90166 1.21261 1.01504 0.93531 0.99591 1.20396 0.89018 0.94220 0.94023 1.17839 0.94779 0.94009 0.87235 0.94456 1.22042 0.93402 1.39345 1.08879 0.94596 1.26764 1.07283 0.92819 0.94918 1.70745 1.02662 1.42504 1.41690 0.83090 0.71573 0.76901 0.75644 1.20974 1.19978 1.20969 1.22414 0.88763 1.01632 1.01331 1.22772 1.04102 0.95971 0.98263 1.23000 0.99769 0.99923 0.98137 0.85968 0.90809 0.89662 0.81411 0.81003 0.85445 0.90534 0.90813 0.90662 0.89316 0.87752 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.62 10.72 113.37 1.22 -2.41 16 2 S -0.18 -7.19 19.86 -56.49 -1.12 -8.31 16 3 C -0.18 -7.22 5.70 22.64 0.13 -7.09 16 4 C 0.12 4.07 7.28 22.49 0.16 4.24 16 5 F -0.13 -4.47 16.76 44.97 0.75 -3.71 16 6 C -0.17 -4.63 10.02 22.29 0.22 -4.41 16 7 C -0.06 -1.49 10.04 22.30 0.22 -1.27 16 8 C -0.14 -4.92 8.96 22.26 0.20 -4.72 16 9 C 0.03 1.08 4.10 -19.73 -0.08 1.00 16 10 C 0.08 3.86 1.74 -12.28 -0.02 3.84 16 11 H 0.04 1.97 5.65 -2.40 -0.01 1.95 16 12 C -0.60 -32.76 8.27 25.60 0.21 -32.55 16 13 H 0.04 2.00 7.72 -2.91 -0.02 1.98 16 14 C -0.02 -0.93 5.31 84.66 0.45 -0.48 16 15 N -0.94 -54.90 13.37 21.45 0.29 -54.61 16 16 Si 1.10 50.39 29.90 68.60 2.05 52.44 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 20 C -0.12 -5.36 3.54 -10.79 -0.04 -5.40 16 21 C -0.17 -6.99 8.27 30.62 0.25 -6.74 16 22 C -0.17 -6.02 9.76 30.62 0.30 -5.72 16 23 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 24 H 0.07 2.24 7.17 -2.39 -0.02 2.22 16 25 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.17 3.23 8.06 -2.91 -0.02 3.20 16 27 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.13 4.56 7.92 -2.91 -0.02 4.54 16 29 H 0.28 15.93 4.18 -92.70 -0.39 15.55 16 30 H 0.07 3.48 8.06 -2.38 -0.02 3.46 16 31 H 0.07 3.17 7.81 -2.39 -0.02 3.15 16 32 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 33 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.08 2.80 6.99 -2.39 -0.02 2.78 16 Total: -1.00 -63.99 299.10 6.67 -57.32 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 1.48 Total: 18.58 kcal Atomic # 6 Polarization: -64.94 SS G_CDS: 3.23 Total: -61.71 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.29 Total: -54.61 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.75 Total: -3.71 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.05 Total: 52.44 kcal Atomic # 16 Polarization: -7.19 SS G_CDS: -1.12 Total: -8.31 kcal Total: -63.99 6.67 -57.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260499654.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.572 kcal (2) G-P(sol) polarization free energy of solvation -63.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds