Wall clock time and date at job start Mon Mar 30 2020 07:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76199 * 102.99636 * 2 1 4 4 C 1.39177 * 120.08372 * 269.97292 * 3 2 1 5 5 F 1.35102 * 120.06067 * 0.04759 * 4 3 2 6 6 C 1.38222 * 119.88243 * 180.02562 * 4 3 2 7 7 C 1.38351 * 120.05493 * 0.02562 * 6 4 3 8 8 C 1.38244 * 120.16988 * 359.69902 * 7 6 4 9 9 C 1.38176 * 120.11576 * 0.55978 * 8 7 6 10 10 C 1.50709 * 120.02529 * 179.74446 * 9 8 7 11 11 H 1.09001 * 109.46599 * 179.72069 * 10 9 8 12 12 C 1.50700 * 109.46949 * 59.71871 * 10 9 8 13 13 H 1.07995 * 120.00399 * 305.53237 * 12 10 9 14 14 C 1.37877 * 119.99529 * 125.53603 * 12 10 9 15 15 N 1.31514 * 120.00426 * 6.03921 * 14 12 10 16 16 Si 1.86801 * 119.99869 * 186.02913 * 14 12 10 17 17 H 1.48505 * 109.46552 * 90.00196 * 16 14 12 18 18 H 1.48493 * 109.47536 * 210.00077 * 16 14 12 19 19 H 1.48497 * 109.47171 * 330.00974 * 16 14 12 20 20 C 1.52993 * 109.47009 * 299.71704 * 10 9 8 21 21 C 1.52997 * 117.50002 * 246.71582 * 20 10 9 22 22 C 1.53001 * 117.49774 * 178.05573 * 20 10 9 23 23 H 1.09004 * 109.47310 * 300.00024 * 1 2 3 24 24 H 1.09006 * 109.47321 * 60.00486 * 1 2 3 25 25 H 1.09006 * 109.47308 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.97160 * 180.02562 * 6 4 3 27 27 H 1.07992 * 119.91277 * 179.97438 * 7 6 4 28 28 H 1.08003 * 119.94271 * 180.27234 * 8 7 6 29 29 H 0.97003 * 120.00371 * 179.97438 * 15 14 12 30 30 H 1.09000 * 115.54938 * 32.38473 * 20 10 9 31 31 H 1.09000 * 117.50218 * 0.02562 * 21 20 10 32 32 H 1.09000 * 117.49710 * 145.02200 * 21 20 10 33 33 H 1.09004 * 117.49531 * 214.98179 * 22 20 10 34 34 H 1.08991 * 117.49902 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 2.3677 2.3965 -1.2043 5 9 2.2160 1.7413 -2.3760 6 6 2.6791 3.7432 -1.1994 7 6 2.8344 4.4141 0.0005 8 6 2.6729 3.7425 1.1980 9 6 2.3669 2.3951 1.2014 10 6 2.1970 1.6636 2.5081 11 1 1.9552 0.6192 2.3110 12 6 1.0805 2.2976 3.2971 13 1 1.1025 3.3563 3.5091 14 6 0.0308 1.5258 3.7483 15 7 0.0608 0.2201 3.5944 16 14 -1.4341 2.3349 4.5783 17 1 -2.4535 2.6813 3.5555 18 1 -2.0236 1.3966 5.5667 19 1 -0.9897 3.5703 5.2724 20 6 3.4974 1.7435 3.3101 21 6 4.2688 0.4418 3.5366 22 6 3.5135 1.0960 4.6962 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 2.8011 4.2721 -2.1331 27 1 3.0781 5.4662 0.0016 28 1 2.7908 4.2709 2.1325 29 1 -0.6775 -0.3229 3.9122 30 1 4.0785 2.6556 3.1738 31 1 3.8500 -0.4715 3.1140 32 1 5.3573 0.4976 3.5499 33 1 4.1054 1.5820 5.4718 34 1 2.5975 0.6136 5.0369 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260499659.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:59 Heat of formation + Delta-G solvation = -2.765442 kcal Electronic energy + Delta-G solvation = -18297.152368 eV Core-core repulsion = 15429.214152 eV Total energy + Delta-G solvation = -2867.938216 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.43212 -38.66700 -36.33227 -32.92990 -31.26994 -30.06883 -28.04064 -27.16919 -23.88013 -22.39080 -21.48127 -21.24517 -19.09770 -17.13572 -16.66602 -16.15938 -15.57408 -15.16994 -14.62947 -14.55508 -14.39648 -13.42682 -13.22729 -12.91183 -12.63986 -12.57030 -12.33727 -11.80743 -11.72726 -11.45676 -11.12810 -11.00313 -10.64686 -10.55396 -10.44456 -9.97300 -9.77178 -9.49547 -9.07141 -8.67173 -8.55292 -8.18568 -7.93641 -6.74994 -6.12088 -4.15444 1.43378 1.83163 2.49583 3.22064 3.30417 3.32851 3.34906 4.17003 4.34445 4.69195 4.95955 5.17794 5.25968 5.51221 5.72272 5.74937 5.82945 5.94659 5.98734 6.09964 6.16753 6.31247 6.48897 6.50667 6.59686 6.62104 6.72058 6.86400 6.99687 7.03988 7.27438 7.41839 7.50750 7.74810 7.93652 8.25712 8.95621 9.45443 10.93274 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.008686 C = 0.008106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.360939 B = 3222.916523 C = 3453.463526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.133 6.133 3 C -0.168 4.168 4 C 0.134 3.866 5 F -0.136 7.136 6 C -0.196 4.196 7 C -0.076 4.076 8 C -0.138 4.138 9 C 0.048 3.952 10 C 0.064 3.936 11 H 0.116 0.884 12 C -0.500 4.500 13 H 0.054 0.946 14 C 0.072 3.928 15 N -0.875 5.875 16 Si 0.884 3.116 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.119 4.119 21 C -0.199 4.199 22 C -0.163 4.163 23 H 0.098 0.902 24 H 0.060 0.940 25 H 0.093 0.907 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.128 0.872 29 H 0.263 0.737 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.562 3.203 -5.333 7.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.099 5.901 3 C -0.281 4.281 4 C 0.111 3.889 5 F -0.115 7.115 6 C -0.216 4.216 7 C -0.094 4.094 8 C -0.158 4.158 9 C 0.045 3.955 10 C 0.045 3.955 11 H 0.134 0.866 12 C -0.537 4.537 13 H 0.073 0.927 14 C -0.132 4.132 15 N -0.512 5.512 16 Si 0.712 3.288 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.138 4.138 21 C -0.236 4.236 22 C -0.200 4.200 23 H 0.117 0.883 24 H 0.079 0.921 25 H 0.111 0.889 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.146 0.854 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.088 2.038 -5.338 7.025 hybrid contribution -1.721 1.639 0.265 2.391 sum 2.367 3.677 -5.073 6.698 Atomic orbital electron populations 1.23515 0.95017 1.05671 1.05337 1.84817 1.06925 1.01522 1.96859 1.21706 1.13586 0.98949 0.93814 1.17827 0.99915 0.90407 0.80704 1.91467 1.92974 1.81416 1.45637 1.20808 1.08779 0.92627 0.99381 1.21056 0.97095 0.99366 0.91881 1.21144 1.02226 0.94615 0.97795 1.21084 0.84979 0.93363 0.96064 1.18323 0.90739 1.00862 0.85594 0.86583 1.20882 1.04774 0.94780 1.33289 0.92736 1.24923 0.97927 0.94843 0.95462 1.69932 1.31657 1.03553 1.46009 0.86716 0.83135 0.79536 0.79423 1.20751 1.21164 1.19824 1.22461 0.98574 0.93724 0.99034 1.22988 0.96723 0.98533 1.05341 1.22688 1.01890 1.04324 0.91057 0.88289 0.92124 0.88878 0.85599 0.85820 0.85370 0.92746 0.90693 0.89121 0.91150 0.91281 0.87848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 10.72 101.05 1.08 -1.37 16 2 S -0.13 -2.74 19.85 -107.50 -2.13 -4.88 16 3 C -0.17 -3.50 5.70 -39.01 -0.22 -3.73 16 4 C 0.13 2.53 7.28 -39.24 -0.29 2.25 16 5 F -0.14 -2.53 16.76 2.25 0.04 -2.49 16 6 C -0.20 -3.18 10.02 -39.55 -0.40 -3.58 16 7 C -0.08 -1.20 10.04 -39.54 -0.40 -1.59 16 8 C -0.14 -2.56 8.54 -39.60 -0.34 -2.90 16 9 C 0.05 1.02 4.79 -104.41 -0.50 0.52 16 10 C 0.06 1.46 2.30 -92.92 -0.21 1.25 16 11 H 0.12 2.87 4.60 -51.88 -0.24 2.63 16 12 C -0.50 -12.39 7.52 -34.44 -0.26 -12.65 16 13 H 0.05 1.36 7.62 -52.49 -0.40 0.96 16 14 C 0.07 1.80 5.45 -17.82 -0.10 1.71 16 15 N -0.87 -22.46 12.64 55.43 0.70 -21.76 16 16 Si 0.88 19.99 29.54 -169.99 -5.02 14.96 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 C -0.12 -2.51 5.05 -90.62 -0.46 -2.97 16 21 C -0.20 -3.90 10.18 -26.69 -0.27 -4.17 16 22 C -0.16 -3.32 9.83 -26.69 -0.26 -3.59 16 23 H 0.10 2.18 8.14 -51.92 -0.42 1.76 16 24 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 25 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 26 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 28 H 0.13 2.28 7.76 -52.48 -0.41 1.88 16 29 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 30 H 0.07 1.49 7.41 -51.93 -0.38 1.10 16 31 H 0.09 1.88 8.04 -51.93 -0.42 1.46 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.10 2.38 8.11 -51.93 -0.42 1.96 16 LS Contribution 306.20 15.07 4.61 4.61 Total: -1.00 -25.71 306.20 -8.78 -34.49 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.36 Total: 5.89 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: -2.62 Total: -30.82 kcal Atomic # 7 Polarization: -22.46 SS G_CDS: 0.70 Total: -21.76 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -2.13 Total: -4.88 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -25.71 -8.78 -34.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260499659.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.725 kcal (2) G-P(sol) polarization free energy of solvation -25.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds