Wall clock time and date at job start Mon Mar 30 2020 07:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76199 * 102.99636 * 2 1 4 4 C 1.39177 * 120.08372 * 269.97292 * 3 2 1 5 5 F 1.35102 * 120.06067 * 0.04759 * 4 3 2 6 6 C 1.38222 * 119.88243 * 180.02562 * 4 3 2 7 7 C 1.38351 * 120.05493 * 0.02562 * 6 4 3 8 8 C 1.38244 * 120.16988 * 359.69902 * 7 6 4 9 9 C 1.38176 * 120.11576 * 0.55978 * 8 7 6 10 10 C 1.50709 * 120.02529 * 179.74446 * 9 8 7 11 11 H 1.09001 * 109.46599 * 179.72069 * 10 9 8 12 12 C 1.50700 * 109.46949 * 59.71871 * 10 9 8 13 13 H 1.07995 * 120.00399 * 305.53237 * 12 10 9 14 14 C 1.37877 * 119.99529 * 125.53603 * 12 10 9 15 15 N 1.31514 * 120.00426 * 6.03921 * 14 12 10 16 16 Si 1.86801 * 119.99869 * 186.02913 * 14 12 10 17 17 H 1.48505 * 109.46552 * 90.00196 * 16 14 12 18 18 H 1.48493 * 109.47536 * 210.00077 * 16 14 12 19 19 H 1.48497 * 109.47171 * 330.00974 * 16 14 12 20 20 C 1.52993 * 109.47009 * 299.71704 * 10 9 8 21 21 C 1.52997 * 117.50002 * 246.71582 * 20 10 9 22 22 C 1.53001 * 117.49774 * 178.05573 * 20 10 9 23 23 H 1.09004 * 109.47310 * 300.00024 * 1 2 3 24 24 H 1.09006 * 109.47321 * 60.00486 * 1 2 3 25 25 H 1.09006 * 109.47308 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.97160 * 180.02562 * 6 4 3 27 27 H 1.07992 * 119.91277 * 179.97438 * 7 6 4 28 28 H 1.08003 * 119.94271 * 180.27234 * 8 7 6 29 29 H 0.97003 * 120.00371 * 179.97438 * 15 14 12 30 30 H 1.09000 * 115.54938 * 32.38473 * 20 10 9 31 31 H 1.09000 * 117.50218 * 0.02562 * 21 20 10 32 32 H 1.09000 * 117.49710 * 145.02200 * 21 20 10 33 33 H 1.09004 * 117.49531 * 214.98179 * 22 20 10 34 34 H 1.08991 * 117.49902 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 2.3677 2.3965 -1.2043 5 9 2.2160 1.7413 -2.3760 6 6 2.6791 3.7432 -1.1994 7 6 2.8344 4.4141 0.0005 8 6 2.6729 3.7425 1.1980 9 6 2.3669 2.3951 1.2014 10 6 2.1970 1.6636 2.5081 11 1 1.9552 0.6192 2.3110 12 6 1.0805 2.2976 3.2971 13 1 1.1025 3.3563 3.5091 14 6 0.0308 1.5258 3.7483 15 7 0.0608 0.2201 3.5944 16 14 -1.4341 2.3349 4.5783 17 1 -2.4535 2.6813 3.5555 18 1 -2.0236 1.3966 5.5667 19 1 -0.9897 3.5703 5.2724 20 6 3.4974 1.7435 3.3101 21 6 4.2688 0.4418 3.5366 22 6 3.5135 1.0960 4.6962 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 2.8011 4.2721 -2.1331 27 1 3.0781 5.4662 0.0016 28 1 2.7908 4.2709 2.1325 29 1 -0.6775 -0.3229 3.9122 30 1 4.0785 2.6556 3.1738 31 1 3.8500 -0.4715 3.1140 32 1 5.3573 0.4976 3.5499 33 1 4.1054 1.5820 5.4718 34 1 2.5975 0.6136 5.0369 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260499659.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:58 Heat of formation + Delta-G solvation = -12.784337 kcal Electronic energy + Delta-G solvation = -18297.586820 eV Core-core repulsion = 15429.214152 eV Total energy + Delta-G solvation = -2868.372668 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.85902 -40.13863 -37.92012 -34.72573 -32.84760 -31.49858 -29.59923 -28.83321 -25.65020 -23.80170 -23.00163 -22.83296 -20.75204 -18.64425 -18.39197 -17.63105 -17.11847 -16.61451 -16.45531 -16.07819 -15.86921 -14.99157 -14.75265 -14.47699 -14.28490 -14.13870 -13.83713 -13.39113 -13.28497 -13.05307 -12.87485 -12.57775 -12.37454 -12.15846 -12.03836 -11.72305 -11.38216 -11.15156 -10.72835 -10.50117 -10.28833 -9.64416 -9.41267 -8.36481 -8.01753 -6.08932 0.00260 0.41714 0.97653 1.40126 1.44863 1.50688 1.81467 2.44594 2.76677 3.20631 3.32388 3.40495 3.92563 4.18272 4.22795 4.32170 4.39100 4.42518 4.46455 4.50289 4.63238 4.89360 4.94337 4.97578 5.02512 5.14829 5.27099 5.33721 5.37696 5.60062 5.61624 5.77086 5.82552 6.03336 6.14957 6.43137 7.07241 7.52909 9.02325 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.008686 C = 0.008106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.360939 B = 3222.916523 C = 3453.463526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.161 6.161 3 C -0.188 4.188 4 C 0.119 3.881 5 F -0.138 7.138 6 C -0.181 4.181 7 C -0.058 4.058 8 C -0.147 4.147 9 C 0.020 3.980 10 C 0.063 3.937 11 H 0.093 0.907 12 C -0.504 4.504 13 H 0.048 0.952 14 C 0.034 3.966 15 N -0.896 5.896 16 Si 0.931 3.069 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.271 1.271 20 C -0.130 4.130 21 C -0.185 4.185 22 C -0.164 4.164 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.108 0.892 26 H 0.164 0.836 27 H 0.170 0.830 28 H 0.133 0.867 29 H 0.259 0.741 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.505 5.323 -6.259 9.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S 0.071 5.929 3 C -0.300 4.300 4 C 0.097 3.903 5 F -0.116 7.116 6 C -0.201 4.201 7 C -0.076 4.076 8 C -0.167 4.167 9 C 0.018 3.982 10 C 0.044 3.956 11 H 0.111 0.889 12 C -0.542 4.542 13 H 0.066 0.934 14 C -0.166 4.166 15 N -0.534 5.534 16 Si 0.758 3.242 17 H -0.210 1.210 18 H -0.214 1.214 19 H -0.196 1.196 20 C -0.148 4.148 21 C -0.223 4.223 22 C -0.201 4.201 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.127 0.873 26 H 0.181 0.819 27 H 0.188 0.812 28 H 0.150 0.850 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.035 4.165 -6.266 9.053 hybrid contribution -1.963 1.029 0.496 2.272 sum 3.071 5.194 -5.769 8.348 Atomic orbital electron populations 1.23422 0.94097 1.06448 1.04352 1.84776 1.08076 1.03110 1.96890 1.21800 1.14863 0.98563 0.94760 1.18041 1.00695 0.91522 0.80051 1.91461 1.93063 1.81690 1.45421 1.21270 1.06200 0.91355 1.01247 1.21504 0.94505 1.01253 0.90320 1.21297 1.02345 0.93640 0.99412 1.20967 0.87392 0.94646 0.95235 1.18147 0.90994 0.99702 0.86735 0.88919 1.21069 1.05454 0.94362 1.33325 0.93395 1.25417 0.99713 0.95229 0.96278 1.70035 1.31946 1.04286 1.47126 0.85982 0.80966 0.78739 0.78482 1.20962 1.21431 1.19560 1.22463 0.98420 0.94928 0.99033 1.22963 0.98143 0.97070 1.04075 1.22615 1.01171 1.04566 0.91715 0.91361 0.90725 0.87336 0.81874 0.81232 0.84960 0.93182 0.89216 0.91029 0.88165 0.88690 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 10.72 113.37 1.21 -3.30 16 2 S -0.16 -6.73 19.85 -56.49 -1.12 -7.85 16 3 C -0.19 -7.74 5.70 22.64 0.13 -7.61 16 4 C 0.12 4.28 7.28 22.49 0.16 4.45 16 5 F -0.14 -4.90 16.76 44.97 0.75 -4.14 16 6 C -0.18 -5.15 10.02 22.29 0.22 -4.93 16 7 C -0.06 -1.58 10.04 22.30 0.22 -1.36 16 8 C -0.15 -5.14 8.54 22.26 0.19 -4.95 16 9 C 0.02 0.85 4.79 -19.73 -0.09 0.76 16 10 C 0.06 2.94 2.30 -12.29 -0.03 2.91 16 11 H 0.09 4.74 4.60 -2.42 -0.01 4.73 16 12 C -0.50 -25.33 7.52 25.60 0.19 -25.14 16 13 H 0.05 2.41 7.62 -2.91 -0.02 2.38 16 14 C 0.03 1.76 5.45 84.65 0.46 2.22 16 15 N -0.90 -47.57 12.64 21.45 0.27 -47.30 16 16 Si 0.93 41.58 29.54 68.60 2.03 43.60 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 20 C -0.13 -5.41 5.05 -10.80 -0.05 -5.46 16 21 C -0.19 -7.17 10.18 30.62 0.31 -6.86 16 22 C -0.16 -6.65 9.83 30.62 0.30 -6.35 16 23 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 24 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 25 H 0.11 3.78 8.14 -2.39 -0.02 3.77 16 26 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 27 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 28 H 0.13 4.44 7.76 -2.91 -0.02 4.41 16 29 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 30 H 0.09 3.43 7.41 -2.39 -0.02 3.41 16 31 H 0.07 3.03 8.04 -2.39 -0.02 3.01 16 32 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.09 3.31 8.14 -2.38 -0.02 3.29 16 34 H 0.07 3.35 8.11 -2.39 -0.02 3.33 16 Total: -1.00 -56.48 306.20 6.26 -50.22 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 1.09 Total: 21.10 kcal Atomic # 6 Polarization: -58.86 SS G_CDS: 3.23 Total: -55.62 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.27 Total: -47.30 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.75 Total: -4.14 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: -6.73 SS G_CDS: -1.12 Total: -7.85 kcal Total: -56.48 6.26 -50.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260499659.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.432 kcal (2) G-P(sol) polarization free energy of solvation -56.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds