Wall clock time and date at job start Mon Mar 30 2020 06:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38277 * 119.95807 * 2 1 4 4 C 1.38247 * 120.11631 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.04295 * 0.02562 * 4 3 2 6 6 Cl 1.73601 * 120.03824 * 179.97438 * 5 4 3 7 7 C 1.38816 * 119.92246 * 0.25768 * 5 4 3 8 8 O 1.35929 * 120.05713 * 179.71962 * 7 5 4 9 9 C 1.38145 * 119.96358 * 179.97438 * 2 1 3 10 10 C 1.50702 * 120.01781 * 0.02698 * 9 2 1 11 11 H 1.08993 * 109.47319 * 5.58944 * 10 9 2 12 12 C 1.50702 * 109.46996 * 125.58885 * 10 9 2 13 13 H 1.08004 * 120.00362 * 359.97438 * 12 10 9 14 14 C 1.37879 * 119.99800 * 179.97438 * 12 10 9 15 15 N 1.31508 * 120.00425 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99849 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47253 * 89.99831 * 16 14 12 18 18 H 1.48498 * 109.47071 * 209.99882 * 16 14 12 19 19 H 1.48500 * 109.47216 * 329.99644 * 16 14 12 20 20 C 1.53002 * 109.46868 * 245.58349 * 10 9 2 21 21 C 1.53004 * 117.49344 * 128.62438 * 20 10 9 22 22 C 1.53004 * 117.49787 * 60.00456 * 20 10 9 23 23 H 1.08995 * 109.46950 * 96.12770 * 1 2 3 24 24 H 1.09006 * 109.46978 * 216.12821 * 1 2 3 25 25 H 1.09001 * 109.47173 * 336.12184 * 1 2 3 26 26 H 1.07996 * 119.94459 * 359.95809 * 3 2 1 27 27 H 1.08005 * 119.97699 * 179.97438 * 4 3 2 28 28 H 0.96699 * 113.99608 * 89.99987 * 8 7 5 29 29 H 0.96996 * 120.00657 * 179.97438 * 15 14 12 30 30 H 1.08994 * 115.55245 * 274.32846 * 20 10 9 31 31 H 1.08998 * 117.50124 * 0.02562 * 21 20 10 32 32 H 1.08999 * 117.49376 * 145.02731 * 21 20 10 33 33 H 1.08998 * 117.49801 * 214.97725 * 22 20 10 34 34 H 1.09006 * 117.49296 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5800 1.2018 0.0005 5 6 4.2755 0.0070 0.0005 6 17 6.0115 0.0119 0.0005 7 6 3.5840 -1.1967 -0.0054 8 8 4.2651 -2.3731 -0.0112 9 6 2.1970 -1.1968 0.0005 10 6 1.4431 -2.5017 0.0005 11 1 0.3758 -2.3047 -0.1001 12 6 1.9082 -3.3505 -1.1546 13 1 2.6730 -2.9818 -1.8222 14 6 1.3575 -4.5979 -1.3591 15 7 0.4266 -5.0471 -0.5460 16 14 1.9345 -5.6504 -2.7905 17 1 3.0730 -6.4982 -2.3541 18 1 0.8192 -6.5170 -3.2488 19 1 2.3701 -4.7727 -3.9063 20 6 1.7038 -3.2413 1.3143 21 6 0.4873 -3.7329 2.1015 22 6 1.2981 -2.5400 2.6122 23 1 -0.3633 -0.1097 -1.0218 24 1 -0.3633 -0.8301 0.6059 25 1 -0.3633 0.9397 0.4160 26 1 1.6560 2.1324 -0.0007 27 1 4.1171 2.1389 0.0001 28 1 4.4621 -2.7177 0.8706 29 1 0.0389 -5.9245 -0.6900 30 1 2.6009 -3.8598 1.3356 31 1 -0.4985 -3.5298 1.6832 32 1 0.5842 -4.6751 2.6409 33 1 1.9282 -2.6975 3.4875 34 1 0.8451 -1.5519 2.5300 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260502650.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:52 Heat of formation + Delta-G solvation = -8.588021 kcal Electronic energy + Delta-G solvation = -18574.328849 eV Core-core repulsion = 15691.721651 eV Total energy + Delta-G solvation = -2882.607198 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.65349 -36.61436 -36.18752 -35.84589 -32.75238 -31.91828 -30.15771 -27.34495 -26.11407 -23.54020 -21.62517 -21.26073 -20.72593 -19.14487 -17.28469 -16.67559 -15.92544 -15.28140 -14.64590 -14.39553 -14.09833 -13.50487 -13.11790 -13.01473 -12.61402 -12.31857 -12.21049 -11.92942 -11.52940 -11.11129 -10.92136 -10.80357 -10.67550 -10.57161 -10.52213 -10.21598 -9.91612 -9.81362 -9.55475 -8.77675 -8.69890 -8.27306 -7.94077 -7.84374 -5.94937 -3.97407 1.61573 1.82544 2.57305 3.35330 3.41752 3.47402 4.04951 4.50635 4.80739 5.00428 5.21876 5.34684 5.45399 5.61584 5.76924 5.91538 5.96101 6.08328 6.10352 6.13486 6.28678 6.41581 6.50419 6.58328 6.65659 6.74846 6.94576 6.98870 7.09569 7.19228 7.34558 7.45547 7.77158 8.01121 8.32290 8.43805 9.04401 9.64703 11.11387 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017229 B = 0.008386 C = 0.007031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.814848 B = 3338.034490 C = 3981.498139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.080 4.080 3 C -0.125 4.125 4 C -0.122 4.122 5 C -0.074 4.074 6 Cl -0.083 7.083 7 C 0.134 3.866 8 O -0.463 6.463 9 C -0.044 4.044 10 C 0.108 3.892 11 H 0.047 0.953 12 C -0.493 4.493 13 H 0.061 0.939 14 C 0.065 3.935 15 N -0.881 5.881 16 Si 0.889 3.111 17 H -0.282 1.282 18 H -0.290 1.290 19 H -0.276 1.276 20 C -0.083 4.083 21 C -0.133 4.133 22 C -0.232 4.232 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.378 0.622 29 H 0.257 0.743 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.824 9.311 4.459 10.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.080 4.080 3 C -0.143 4.143 4 C -0.141 4.141 5 C -0.101 4.101 6 Cl -0.054 7.054 7 C 0.088 3.912 8 O -0.272 6.272 9 C -0.045 4.045 10 C 0.089 3.911 11 H 0.065 0.935 12 C -0.531 4.531 13 H 0.079 0.921 14 C -0.137 4.137 15 N -0.519 5.519 16 Si 0.717 3.283 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.201 1.201 20 C -0.102 4.102 21 C -0.170 4.170 22 C -0.269 4.269 23 H 0.090 0.910 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.140 0.860 27 H 0.142 0.858 28 H 0.233 0.767 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.829 9.199 3.872 10.373 hybrid contribution 0.607 -0.776 -0.255 1.018 sum 3.436 8.423 3.617 9.789 Atomic orbital electron populations 1.20813 0.91175 1.02021 1.02801 1.19826 0.96384 0.92168 0.99651 1.20831 0.93062 0.97572 1.02875 1.20660 0.94107 0.95905 1.03408 1.21444 0.83733 0.95115 1.09777 1.98314 1.10971 1.98954 1.97188 1.18014 0.89536 0.84077 0.99596 1.84957 1.75234 1.35011 1.31951 1.20784 0.92266 0.97163 0.94268 1.17561 0.95062 0.86021 0.92412 0.93547 1.20964 1.21162 1.00355 1.10584 0.92111 1.24899 0.95036 0.97674 0.96097 1.70011 1.26632 1.18524 1.36757 0.86645 0.78077 0.80410 0.83136 1.20863 1.21618 1.20101 1.22216 0.98017 0.99873 0.90048 1.22411 0.97121 0.94955 1.02555 1.23122 1.06879 0.97308 0.99559 0.91033 0.90560 0.92507 0.86014 0.85841 0.76683 0.93331 0.89803 0.89603 0.91131 0.91117 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 9.13 36.01 0.33 -1.42 16 2 C -0.08 -1.41 5.88 -104.64 -0.62 -2.02 16 3 C -0.13 -1.92 9.67 -39.56 -0.38 -2.30 16 4 C -0.12 -1.89 9.83 -39.57 -0.39 -2.28 16 5 C -0.07 -1.29 6.33 -39.36 -0.25 -1.54 16 6 Cl -0.08 -1.31 28.50 -51.86 -1.48 -2.79 16 7 C 0.13 2.63 6.14 -39.20 -0.24 2.38 16 8 O -0.46 -9.22 10.39 -19.52 -0.20 -9.43 16 9 C -0.04 -0.89 4.41 -104.48 -0.46 -1.35 16 10 C 0.11 2.45 1.73 -92.92 -0.16 2.29 16 11 H 0.05 1.13 5.48 -51.93 -0.28 0.85 16 12 C -0.49 -12.88 7.29 -34.44 -0.25 -13.13 16 13 H 0.06 1.68 7.10 -52.48 -0.37 1.31 16 14 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 15 N -0.88 -23.66 11.43 55.43 0.63 -23.03 16 16 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C -0.08 -1.77 3.53 -90.61 -0.32 -2.09 16 21 C -0.13 -2.75 9.05 -26.73 -0.24 -2.99 16 22 C -0.23 -4.27 9.87 -26.73 -0.26 -4.54 16 23 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 24 H 0.08 1.28 6.50 -51.93 -0.34 0.94 16 25 H 0.06 0.72 8.04 -51.93 -0.42 0.30 16 26 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 27 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 28 H 0.38 6.23 8.46 45.56 0.39 6.61 16 29 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.08 1.89 7.37 -51.93 -0.38 1.51 16 31 H 0.09 1.86 8.05 -51.93 -0.42 1.45 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.08 1.39 8.08 -51.93 -0.42 0.97 16 LS Contribution 297.28 15.07 4.48 4.48 Total: -1.00 -27.56 297.28 -8.42 -35.98 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -3.50 Total: 5.80 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -3.34 Total: -27.36 kcal Atomic # 7 Polarization: -23.66 SS G_CDS: 0.63 Total: -23.03 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.20 Total: -9.43 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.48 Total: -2.79 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.56 -8.42 -35.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260502650.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.392 kcal (2) G-P(sol) polarization free energy of solvation -27.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds