Wall clock time and date at job start Mon Mar 30 2020 06:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38277 * 119.95807 * 2 1 4 4 C 1.38247 * 120.11631 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.04295 * 0.02562 * 4 3 2 6 6 Cl 1.73601 * 120.03824 * 179.97438 * 5 4 3 7 7 C 1.38816 * 119.92246 * 0.25768 * 5 4 3 8 8 O 1.35929 * 120.05713 * 179.71962 * 7 5 4 9 9 C 1.38145 * 119.96358 * 179.97438 * 2 1 3 10 10 C 1.50702 * 120.01781 * 0.02698 * 9 2 1 11 11 H 1.08993 * 109.47319 * 5.58944 * 10 9 2 12 12 C 1.50702 * 109.46996 * 125.58885 * 10 9 2 13 13 H 1.08004 * 120.00362 * 359.97438 * 12 10 9 14 14 C 1.37879 * 119.99800 * 179.97438 * 12 10 9 15 15 N 1.31508 * 120.00425 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99849 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47253 * 89.99831 * 16 14 12 18 18 H 1.48498 * 109.47071 * 209.99882 * 16 14 12 19 19 H 1.48500 * 109.47216 * 329.99644 * 16 14 12 20 20 C 1.53002 * 109.46868 * 245.58349 * 10 9 2 21 21 C 1.53004 * 117.49344 * 128.62438 * 20 10 9 22 22 C 1.53004 * 117.49787 * 60.00456 * 20 10 9 23 23 H 1.08995 * 109.46950 * 96.12770 * 1 2 3 24 24 H 1.09006 * 109.46978 * 216.12821 * 1 2 3 25 25 H 1.09001 * 109.47173 * 336.12184 * 1 2 3 26 26 H 1.07996 * 119.94459 * 359.95809 * 3 2 1 27 27 H 1.08005 * 119.97699 * 179.97438 * 4 3 2 28 28 H 0.96699 * 113.99608 * 89.99987 * 8 7 5 29 29 H 0.96996 * 120.00657 * 179.97438 * 15 14 12 30 30 H 1.08994 * 115.55245 * 274.32846 * 20 10 9 31 31 H 1.08998 * 117.50124 * 0.02562 * 21 20 10 32 32 H 1.08999 * 117.49376 * 145.02731 * 21 20 10 33 33 H 1.08998 * 117.49801 * 214.97725 * 22 20 10 34 34 H 1.09006 * 117.49296 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5800 1.2018 0.0005 5 6 4.2755 0.0070 0.0005 6 17 6.0115 0.0119 0.0005 7 6 3.5840 -1.1967 -0.0054 8 8 4.2651 -2.3731 -0.0112 9 6 2.1970 -1.1968 0.0005 10 6 1.4431 -2.5017 0.0005 11 1 0.3758 -2.3047 -0.1001 12 6 1.9082 -3.3505 -1.1546 13 1 2.6730 -2.9818 -1.8222 14 6 1.3575 -4.5979 -1.3591 15 7 0.4266 -5.0471 -0.5460 16 14 1.9345 -5.6504 -2.7905 17 1 3.0730 -6.4982 -2.3541 18 1 0.8192 -6.5170 -3.2488 19 1 2.3701 -4.7727 -3.9063 20 6 1.7038 -3.2413 1.3143 21 6 0.4873 -3.7329 2.1015 22 6 1.2981 -2.5400 2.6122 23 1 -0.3633 -0.1097 -1.0218 24 1 -0.3633 -0.8301 0.6059 25 1 -0.3633 0.9397 0.4160 26 1 1.6560 2.1324 -0.0007 27 1 4.1171 2.1389 0.0001 28 1 4.4621 -2.7177 0.8706 29 1 0.0389 -5.9245 -0.6900 30 1 2.6009 -3.8598 1.3356 31 1 -0.4985 -3.5298 1.6832 32 1 0.5842 -4.6751 2.6409 33 1 1.9282 -2.6975 3.4875 34 1 0.8451 -1.5519 2.5300 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260502650.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:51 Heat of formation + Delta-G solvation = -22.886329 kcal Electronic energy + Delta-G solvation = -18574.948870 eV Core-core repulsion = 15691.721651 eV Total energy + Delta-G solvation = -2883.227219 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.05929 -38.15289 -37.59569 -37.20780 -34.60826 -33.37705 -31.66341 -28.94060 -27.46857 -25.35550 -23.09346 -22.80873 -22.13540 -20.77362 -18.73393 -18.52040 -17.30619 -16.75173 -16.45546 -15.97232 -15.70287 -14.82804 -14.65929 -14.45419 -14.19572 -13.71284 -13.52272 -13.49535 -12.96080 -12.86387 -12.71835 -12.39903 -12.21184 -12.06671 -11.92190 -11.80219 -11.59610 -11.55327 -11.15642 -10.59034 -10.43691 -10.10802 -9.29179 -9.24193 -7.97910 -6.03773 0.28594 0.49250 1.27669 1.40081 1.43297 1.51476 2.48870 2.73891 3.28724 3.40529 3.46270 4.02848 4.11834 4.27322 4.41429 4.45888 4.53845 4.65876 4.75652 4.80133 4.86736 4.94293 5.13004 5.24515 5.25219 5.34074 5.36423 5.52063 5.55155 5.61439 5.73193 5.90604 5.99089 6.10526 6.46947 6.99726 7.00684 7.58801 9.06047 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017229 B = 0.008386 C = 0.007031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.814848 B = 3338.034490 C = 3981.498139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.089 4.089 3 C -0.114 4.114 4 C -0.112 4.112 5 C -0.083 4.083 6 Cl -0.072 7.072 7 C 0.114 3.886 8 O -0.483 6.483 9 C -0.074 4.074 10 C 0.116 3.884 11 H 0.026 0.974 12 C -0.497 4.497 13 H 0.038 0.962 14 C 0.026 3.974 15 N -0.896 5.896 16 Si 0.934 3.066 17 H -0.283 1.283 18 H -0.286 1.286 19 H -0.281 1.281 20 C -0.097 4.097 21 C -0.142 4.142 22 C -0.193 4.193 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.162 0.838 27 H 0.156 0.844 28 H 0.386 0.614 29 H 0.255 0.745 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.143 11.573 5.080 13.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.089 4.089 3 C -0.132 4.132 4 C -0.131 4.131 5 C -0.111 4.111 6 Cl -0.043 7.043 7 C 0.068 3.932 8 O -0.292 6.292 9 C -0.075 4.075 10 C 0.097 3.903 11 H 0.044 0.956 12 C -0.535 4.535 13 H 0.056 0.944 14 C -0.174 4.174 15 N -0.535 5.535 16 Si 0.762 3.238 17 H -0.210 1.210 18 H -0.211 1.211 19 H -0.207 1.207 20 C -0.116 4.116 21 C -0.179 4.179 22 C -0.230 4.230 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.112 0.888 26 H 0.180 0.820 27 H 0.174 0.826 28 H 0.243 0.757 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.151 11.461 4.496 12.709 hybrid contribution 0.557 -1.403 -0.456 1.577 sum 3.708 10.059 4.040 11.456 Atomic orbital electron populations 1.20808 0.90147 1.03221 1.02341 1.20103 0.97327 0.92189 0.99270 1.21232 0.93117 0.98116 1.00711 1.21093 0.94439 0.96331 1.01218 1.21551 0.84529 0.95073 1.09897 1.98314 1.09950 1.98933 1.97143 1.18174 0.89589 0.84566 1.00854 1.84909 1.75419 1.35885 1.33037 1.20654 0.92710 0.96938 0.97218 1.17277 0.93969 0.87248 0.91768 0.95611 1.21113 1.20198 1.00913 1.11318 0.94415 1.25407 0.95507 0.98665 0.97838 1.70091 1.27296 1.18549 1.37611 0.85944 0.77647 0.79145 0.81057 1.20969 1.21137 1.20680 1.21960 0.97552 1.00929 0.91116 1.22332 0.96219 0.96224 1.03125 1.23093 1.04978 0.96643 0.98328 0.91689 0.92403 0.88844 0.82006 0.82631 0.75714 0.93582 0.91545 0.91195 0.91081 0.88881 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.22 9.13 71.24 0.65 -2.57 16 2 C -0.09 -2.95 5.88 -19.88 -0.12 -3.07 16 3 C -0.11 -3.04 9.67 22.28 0.22 -2.82 16 4 C -0.11 -3.07 9.83 22.28 0.22 -2.85 16 5 C -0.08 -2.76 6.33 22.41 0.14 -2.61 16 6 Cl -0.07 -2.16 28.50 -2.72 -0.08 -2.23 16 7 C 0.11 4.43 6.14 22.52 0.14 4.56 16 8 O -0.48 -19.60 10.39 -92.75 -0.96 -20.56 16 9 C -0.07 -2.99 4.41 -19.77 -0.09 -3.08 16 10 C 0.12 5.39 1.73 -12.28 -0.02 5.36 16 11 H 0.03 1.30 5.48 -2.39 -0.01 1.29 16 12 C -0.50 -26.77 7.29 25.60 0.19 -26.58 16 13 H 0.04 2.16 7.10 -2.91 -0.02 2.14 16 14 C 0.03 1.39 5.30 84.66 0.45 1.84 16 15 N -0.90 -49.27 11.43 21.45 0.25 -49.03 16 16 Si 0.93 44.74 29.54 68.60 2.03 46.76 16 17 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 18 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 19 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 20 C -0.10 -4.21 3.53 -10.79 -0.04 -4.24 16 21 C -0.14 -5.90 9.05 30.60 0.28 -5.62 16 22 C -0.19 -6.91 9.87 30.60 0.30 -6.61 16 23 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.06 1.92 6.50 -2.38 -0.02 1.90 16 25 H 0.09 2.02 8.04 -2.39 -0.02 2.00 16 26 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 27 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 28 H 0.39 13.14 8.46 -74.06 -0.63 12.52 16 29 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 30 H 0.07 3.09 7.37 -2.39 -0.02 3.07 16 31 H 0.07 3.11 8.05 -2.39 -0.02 3.09 16 32 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.09 2.95 8.08 -2.38 -0.02 2.93 16 Total: -1.00 -59.98 297.28 4.04 -55.94 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.49 Total: 17.42 kcal Atomic # 6 Polarization: -50.61 SS G_CDS: 2.32 Total: -48.30 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.25 Total: -49.03 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.96 Total: -20.56 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.08 Total: -2.23 kcal Total: -59.98 4.04 -55.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260502650.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.049 kcal (2) G-P(sol) polarization free energy of solvation -59.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds