Wall clock time and date at job start Mon Mar 30 2020 06:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38274 * 119.96226 * 2 1 4 4 C 1.38252 * 120.11587 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.04440 * 359.68301 * 4 3 2 6 6 Cl 1.73596 * 120.04080 * 180.31885 * 5 4 3 7 7 C 1.38820 * 119.91866 * 0.58987 * 5 4 3 8 8 O 1.35931 * 120.05638 * 179.70259 * 7 5 4 9 9 C 1.38150 * 119.95981 * 180.02562 * 2 1 3 10 10 C 1.50704 * 120.02037 * 359.94716 * 9 2 1 11 11 H 1.08996 * 109.47380 * 354.22099 * 10 9 2 12 12 C 1.50705 * 109.47190 * 234.22048 * 10 9 2 13 13 H 1.08000 * 119.99549 * 274.60836 * 12 10 9 14 14 C 1.37876 * 119.99897 * 94.60508 * 12 10 9 15 15 N 1.31515 * 120.00180 * 354.60492 * 14 12 10 16 16 Si 1.86797 * 119.99745 * 174.59819 * 14 12 10 17 17 H 1.48507 * 109.46772 * 90.00527 * 16 14 12 18 18 H 1.48504 * 109.47262 * 209.99933 * 16 14 12 19 19 H 1.48501 * 109.47710 * 330.00709 * 16 14 12 20 20 C 1.53005 * 109.46817 * 114.22148 * 10 9 2 21 21 C 1.52996 * 117.49727 * 254.13017 * 20 10 9 22 22 C 1.53000 * 117.49363 * 185.50823 * 20 10 9 23 23 H 1.09002 * 109.46517 * 263.98925 * 1 2 3 24 24 H 1.08999 * 109.47022 * 23.98148 * 1 2 3 25 25 H 1.08994 * 109.47431 * 143.98803 * 1 2 3 26 26 H 1.07993 * 119.94484 * 0.02611 * 3 2 1 27 27 H 1.07996 * 119.97673 * 179.97438 * 4 3 2 28 28 H 0.96696 * 113.99630 * 269.72791 * 8 7 5 29 29 H 0.96999 * 119.99852 * 179.97438 * 15 14 12 30 30 H 1.08994 * 115.55255 * 39.84229 * 20 10 9 31 31 H 1.09003 * 117.50129 * 0.02562 * 21 20 10 32 32 H 1.08998 * 117.49914 * 145.01967 * 21 20 10 33 33 H 1.08999 * 117.49985 * 214.97278 * 22 20 10 34 34 H 1.08997 * 117.50214 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1979 0.0000 4 6 3.5801 1.2017 -0.0005 5 6 4.2755 0.0067 0.0056 6 17 6.0115 0.0115 0.0132 7 6 3.5839 -1.1969 -0.0002 8 8 4.2649 -2.3734 -0.0003 9 6 2.1969 -1.1969 -0.0005 10 6 1.4430 -2.5018 0.0001 11 1 0.3760 -2.3049 0.1044 12 6 1.9118 -3.3523 1.1524 13 1 2.7824 -3.9815 1.0399 14 6 1.2294 -3.3272 2.3502 15 7 0.2349 -2.4842 2.5229 16 14 1.7173 -4.4909 3.7276 17 1 2.7431 -3.8422 4.5834 18 1 0.5225 -4.8161 4.5474 19 1 2.2743 -5.7391 3.1473 20 6 1.6992 -3.2394 -1.3157 21 6 0.5674 -3.2619 -2.3449 22 6 0.9178 -4.5309 -1.5652 23 1 -0.3632 -0.1076 1.0221 24 1 -0.3633 0.9389 -0.4177 25 1 -0.3634 -0.8312 -0.6042 26 1 1.6561 2.1323 0.0004 27 1 4.1172 2.1386 -0.0010 28 1 4.4618 -2.7136 -0.8838 29 1 -0.2454 -2.4668 3.3654 30 1 2.7210 -3.1888 -1.6917 31 1 -0.3596 -2.7509 -2.0849 32 1 0.8445 -3.2259 -3.3985 33 1 1.4253 -5.3298 -2.1059 34 1 0.2215 -4.8553 -0.7919 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260502653.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:55 Heat of formation + Delta-G solvation = -25.329171 kcal Electronic energy + Delta-G solvation = -18556.015625 eV Core-core repulsion = 15672.682477 eV Total energy + Delta-G solvation = -2883.333148 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.96584 -38.17388 -37.58521 -37.21693 -34.80022 -33.20615 -31.57109 -28.91479 -27.37419 -25.52050 -23.09751 -22.88719 -22.04238 -20.85025 -18.76386 -18.38138 -17.40399 -16.68104 -16.54381 -15.97467 -15.70901 -14.90499 -14.61360 -14.34235 -14.11413 -13.59843 -13.51897 -13.41782 -13.09707 -12.85258 -12.67590 -12.43091 -12.25523 -12.08103 -11.98332 -11.87505 -11.60173 -11.43944 -11.01503 -10.74663 -10.36745 -10.33945 -9.22307 -9.13523 -8.03086 -6.03381 0.35937 0.57910 1.29803 1.39106 1.42447 1.50125 2.47345 2.81595 3.21897 3.33306 3.46589 4.03663 4.10305 4.28843 4.38898 4.44446 4.47353 4.66811 4.79790 4.84853 4.90716 4.95733 5.04259 5.24303 5.31451 5.33157 5.43258 5.47824 5.52487 5.53011 5.86279 5.89615 6.02899 6.14930 6.48981 7.02529 7.08125 7.58007 9.03823 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015090 B = 0.008764 C = 0.007835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.085286 B = 3194.047179 C = 3573.057686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.086 4.086 3 C -0.122 4.122 4 C -0.121 4.121 5 C -0.084 4.084 6 Cl -0.073 7.073 7 C 0.108 3.892 8 O -0.481 6.481 9 C -0.060 4.060 10 C 0.100 3.900 11 H 0.053 0.947 12 C -0.478 4.478 13 H 0.052 0.948 14 C 0.015 3.985 15 N -0.913 5.913 16 Si 0.934 3.066 17 H -0.291 1.291 18 H -0.286 1.286 19 H -0.271 1.271 20 C -0.135 4.135 21 C -0.179 4.179 22 C -0.172 4.172 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.057 0.943 26 H 0.154 0.846 27 H 0.152 0.848 28 H 0.385 0.615 29 H 0.255 0.745 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.361 5.570 -8.952 11.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 C -0.140 4.140 4 C -0.140 4.140 5 C -0.112 4.112 6 Cl -0.045 7.045 7 C 0.062 3.938 8 O -0.291 6.291 9 C -0.062 4.062 10 C 0.081 3.919 11 H 0.071 0.929 12 C -0.516 4.516 13 H 0.070 0.930 14 C -0.183 4.183 15 N -0.553 5.553 16 Si 0.762 3.238 17 H -0.218 1.218 18 H -0.212 1.212 19 H -0.195 1.195 20 C -0.154 4.154 21 C -0.216 4.216 22 C -0.209 4.209 23 H 0.077 0.923 24 H 0.100 0.900 25 H 0.076 0.924 26 H 0.171 0.829 27 H 0.170 0.830 28 H 0.242 0.758 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.350 5.649 -8.206 10.510 hybrid contribution 0.470 -0.853 0.826 1.277 sum 3.820 4.796 -7.380 9.594 Atomic orbital electron populations 1.20645 0.90473 1.02043 1.02075 1.20084 0.97258 0.92455 0.98876 1.21200 0.93315 0.98108 1.01363 1.20996 0.94260 0.96394 1.02328 1.21508 0.84344 0.95125 1.10173 1.98300 1.10023 1.98946 1.97194 1.18120 0.89566 0.84359 1.01754 1.84943 1.75502 1.35848 1.32832 1.20911 0.92506 0.97566 0.95188 1.17525 0.96151 0.87587 0.90635 0.92897 1.21177 1.11173 1.22867 0.96418 0.92997 1.25514 0.95696 0.96880 1.00229 1.70001 1.22903 1.37113 1.25259 0.85931 0.77191 0.80338 0.80346 1.21800 1.21180 1.19541 1.22298 0.95414 1.00823 0.96833 1.23030 0.99674 1.01686 0.97225 1.22703 1.04082 0.91682 1.02401 0.92348 0.89991 0.92388 0.82868 0.83033 0.75833 0.93562 0.89234 0.90083 0.87568 0.88180 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.45 9.13 71.24 0.65 -2.80 16 2 C -0.09 -3.32 5.88 -19.88 -0.12 -3.44 16 3 C -0.12 -3.91 9.67 22.28 0.22 -3.69 16 4 C -0.12 -3.82 9.83 22.28 0.22 -3.60 16 5 C -0.08 -3.03 6.33 22.41 0.14 -2.89 16 6 Cl -0.07 -2.32 28.50 -2.72 -0.08 -2.39 16 7 C 0.11 4.37 6.21 22.52 0.14 4.51 16 8 O -0.48 -19.14 10.28 -92.77 -0.95 -20.09 16 9 C -0.06 -2.59 4.78 -19.77 -0.09 -2.68 16 10 C 0.10 4.54 1.76 -12.28 -0.02 4.52 16 11 H 0.05 2.65 4.79 -2.39 -0.01 2.64 16 12 C -0.48 -25.10 6.87 25.60 0.18 -24.92 16 13 H 0.05 2.81 7.13 -2.91 -0.02 2.79 16 14 C 0.02 0.82 5.45 84.65 0.46 1.28 16 15 N -0.91 -50.97 12.85 21.45 0.28 -50.69 16 16 Si 0.93 44.83 29.54 68.60 2.03 46.85 16 17 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 18 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 19 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 20 C -0.14 -5.14 4.74 -10.79 -0.05 -5.19 16 21 C -0.18 -5.78 10.18 30.59 0.31 -5.47 16 22 C -0.17 -6.08 10.01 30.60 0.31 -5.78 16 23 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 24 H 0.08 2.27 8.04 -2.39 -0.02 2.26 16 25 H 0.06 2.16 6.56 -2.39 -0.02 2.14 16 26 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 27 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 28 H 0.39 11.95 7.78 -74.06 -0.58 11.37 16 29 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 30 H 0.09 3.13 6.23 -2.39 -0.01 3.12 16 31 H 0.08 2.70 8.08 -2.39 -0.02 2.68 16 32 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.10 3.03 8.14 -2.39 -0.02 3.02 16 34 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -60.23 298.94 4.16 -56.07 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.55 Total: 20.38 kcal Atomic # 6 Polarization: -52.48 SS G_CDS: 2.34 Total: -50.14 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.28 Total: -50.69 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.95 Total: -20.09 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -0.08 Total: -2.39 kcal Total: -60.23 4.16 -56.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260502653.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.746 kcal (2) G-P(sol) polarization free energy of solvation -60.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds