Wall clock time and date at job start Mon Mar 30 2020 06:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35924 * 117.00116 * 2 1 4 4 C 1.38707 * 120.05665 * 359.97438 * 3 2 1 5 5 C 1.38154 * 119.95320 * 180.02562 * 4 3 2 6 6 C 1.50706 * 119.96108 * 180.02562 * 5 4 3 7 7 C 1.38274 * 120.07940 * 0.02562 * 5 4 3 8 8 C 1.50701 * 119.94126 * 179.97438 * 7 5 4 9 9 C 1.50705 * 115.54815 * 294.33062 * 8 7 5 10 10 H 1.08002 * 119.99817 * 144.72889 * 9 8 7 11 11 C 1.37872 * 119.99905 * 324.72303 * 9 8 7 12 12 N 1.31514 * 120.00337 * 351.59389 * 11 9 8 13 13 Si 1.86804 * 119.99833 * 171.59472 * 11 9 8 14 14 H 1.48497 * 109.47234 * 90.00263 * 13 11 9 15 15 H 1.48503 * 109.46909 * 210.00150 * 13 11 9 16 16 H 1.48503 * 109.47071 * 329.99967 * 13 11 9 17 17 C 1.52999 * 117.49806 * 148.66108 * 8 7 5 18 18 C 1.53003 * 117.49870 * 79.99997 * 8 7 5 19 19 C 1.38241 * 120.12032 * 359.97438 * 7 5 4 20 20 C 1.38263 * 120.04037 * 359.76802 * 19 7 5 21 21 Cl 1.73599 * 120.03771 * 180.27588 * 20 19 7 22 22 H 1.09004 * 109.47081 * 299.99806 * 1 2 3 23 23 H 1.08998 * 109.46841 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47140 * 60.00115 * 1 2 3 25 25 H 1.07995 * 120.02233 * 0.02962 * 4 3 2 26 26 H 1.08994 * 109.47048 * 86.25857 * 6 5 4 27 27 H 1.08998 * 109.47414 * 206.26466 * 6 5 4 28 28 H 1.09007 * 109.46892 * 326.26046 * 6 5 4 29 29 H 0.96999 * 120.00572 * 185.01228 * 12 11 9 30 30 H 1.08994 * 117.49959 * 359.97438 * 17 8 7 31 31 H 1.09004 * 117.49947 * 145.02471 * 17 8 7 32 32 H 1.09007 * 117.49574 * 214.97958 * 18 8 7 33 33 H 1.08993 * 117.50171 * 359.97438 * 18 8 7 34 34 H 1.07998 * 119.98364 * 180.02562 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2918 2.3751 -0.0005 5 6 1.9213 3.6050 -0.0011 6 6 1.1019 4.8698 -0.0011 7 6 3.3022 3.6767 -0.0016 8 6 3.9856 5.0199 -0.0028 9 6 3.7806 5.8523 -1.2422 10 1 3.7020 6.9267 -1.1642 11 6 3.6934 5.2424 -2.4756 12 7 3.9526 3.9585 -2.5942 13 14 3.2071 6.2397 -3.9784 14 1 4.4257 6.7982 -4.6174 15 1 2.4982 5.3638 -4.9456 16 1 2.3108 7.3499 -3.5669 17 6 5.3393 5.1243 0.7025 18 6 4.0963 5.7573 1.3332 19 6 4.0570 2.5186 -0.0011 20 6 3.4322 1.2852 0.0048 21 17 4.3802 -0.1691 0.0127 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8899 25 1 0.2133 2.3201 -0.0005 26 1 0.8485 5.1385 1.0244 27 1 1.6776 5.6757 -0.4562 28 1 0.1869 4.7100 -0.5715 29 1 3.9625 3.5447 -3.4714 30 1 5.7353 4.2217 1.1677 31 1 6.0815 5.7956 0.2704 32 1 4.0214 6.8447 1.3156 33 1 3.6746 5.2712 2.2129 34 1 5.1354 2.5772 -0.0011 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260507507.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:07 Heat of formation + Delta-G solvation = -12.441468 kcal Electronic energy + Delta-G solvation = -18472.017108 eV Core-core repulsion = 15589.242812 eV Total energy + Delta-G solvation = -2882.774296 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.10589 -39.30635 -37.45224 -36.67518 -34.11904 -33.12309 -30.60805 -28.63689 -27.53380 -27.11337 -23.69987 -22.98965 -22.16868 -20.87125 -18.76555 -18.36462 -17.18658 -16.62845 -16.50835 -16.28990 -15.47449 -15.06989 -14.77649 -14.50016 -14.23665 -13.97074 -13.55705 -13.23543 -13.12819 -12.80882 -12.72075 -12.33366 -12.26045 -12.24469 -12.04305 -11.94867 -11.68420 -11.49815 -11.21672 -10.96138 -10.57578 -10.11990 -9.41456 -8.70088 -7.91039 -6.08482 0.50033 0.74710 1.38918 1.42901 1.47581 1.54151 2.45252 2.45747 2.96158 3.09079 3.71838 4.00973 4.11083 4.24981 4.44522 4.46241 4.52419 4.61600 4.69041 4.75424 4.85740 4.95600 4.98513 4.99796 5.05118 5.13343 5.22891 5.41803 5.58773 5.61153 5.72250 5.80331 6.06386 6.16356 6.43902 6.55022 6.88758 7.49807 8.99220 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.007881 C = 0.007448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.751846 B = 3551.922604 C = 3758.430733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.329 6.329 3 C 0.106 3.894 4 C -0.204 4.204 5 C -0.047 4.047 6 C -0.117 4.117 7 C 0.000 4.000 8 C 0.063 3.937 9 C -0.499 4.499 10 H 0.059 0.941 11 C 0.040 3.960 12 N -0.882 5.882 13 Si 0.936 3.064 14 H -0.282 1.282 15 H -0.291 1.291 16 H -0.263 1.263 17 C -0.210 4.210 18 C -0.179 4.179 19 C -0.052 4.052 20 C -0.087 4.087 21 Cl -0.081 7.081 22 H 0.065 0.935 23 H 0.121 0.879 24 H 0.055 0.945 25 H 0.151 0.849 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.256 0.744 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.914 -4.147 5.578 9.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.243 6.243 3 C 0.060 3.940 4 C -0.223 4.223 5 C -0.048 4.048 6 C -0.173 4.173 7 C 0.000 4.000 8 C 0.063 3.937 9 C -0.536 4.536 10 H 0.077 0.923 11 C -0.163 4.163 12 N -0.518 5.518 13 Si 0.762 3.238 14 H -0.209 1.209 15 H -0.217 1.217 16 H -0.187 1.187 17 C -0.248 4.248 18 C -0.216 4.216 19 C -0.071 4.071 20 C -0.114 4.114 21 Cl -0.052 7.052 22 H 0.084 0.916 23 H 0.140 0.860 24 H 0.074 0.926 25 H 0.168 0.832 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.818 -4.640 5.443 9.881 hybrid contribution 0.206 0.322 -1.180 1.240 sum -6.612 -4.319 4.262 8.974 Atomic orbital electron populations 1.23292 0.76790 1.05327 1.01945 1.86056 1.23147 1.25872 1.89215 1.18499 0.90122 0.85388 0.99968 1.21091 1.00280 0.90684 1.10219 1.19751 0.93549 0.95273 0.96180 1.20923 0.98660 0.95570 1.02160 1.18857 0.92364 0.93233 0.95594 1.17722 0.94038 0.90981 0.90982 1.20565 1.50529 0.92345 0.90152 0.92250 1.25490 0.94646 0.95397 1.00779 1.70108 1.47143 1.11029 1.23472 0.85894 0.78481 0.79098 0.80295 1.20865 1.21717 1.18733 1.23056 0.92888 1.01778 1.07043 1.22930 1.02614 0.99024 0.97058 1.20438 0.99317 0.89721 0.97629 1.20110 0.88977 0.87687 1.14654 1.98271 1.72375 1.37065 1.97487 0.91617 0.86046 0.92614 0.83169 0.90502 0.89890 0.91817 0.93416 0.90877 0.90836 0.89530 0.89797 0.87047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.81 113.37 1.11 1.58 16 2 O -0.33 -11.08 9.96 -92.69 -0.92 -12.00 16 3 C 0.11 4.09 6.68 22.52 0.15 4.24 16 4 C -0.20 -7.49 8.71 22.36 0.19 -7.29 16 5 C -0.05 -1.92 5.85 -19.87 -0.12 -2.04 16 6 C -0.12 -4.21 9.63 71.24 0.69 -3.52 16 7 C 0.00 0.02 3.29 -19.85 -0.07 -0.04 16 8 C 0.06 2.89 1.19 -53.67 -0.06 2.83 16 9 C -0.50 -24.90 6.88 25.60 0.18 -24.73 16 10 H 0.06 2.94 7.83 -2.91 -0.02 2.92 16 11 C 0.04 2.04 5.28 84.65 0.45 2.48 16 12 N -0.88 -47.50 11.16 21.45 0.24 -47.26 16 13 Si 0.94 41.17 29.55 68.60 2.03 43.20 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 15 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 16 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 17 C -0.21 -8.98 9.43 30.62 0.29 -8.69 16 18 C -0.18 -7.04 9.94 30.62 0.30 -6.74 16 19 C -0.05 -2.35 8.31 22.28 0.19 -2.17 16 20 C -0.09 -3.66 6.33 22.41 0.14 -3.52 16 21 Cl -0.08 -3.05 28.50 -2.72 -0.08 -3.12 16 22 H 0.07 1.29 7.66 -2.38 -0.02 1.27 16 23 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.06 1.22 7.66 -2.39 -0.02 1.20 16 25 H 0.15 4.42 6.30 -2.91 -0.02 4.40 16 26 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.08 3.42 5.17 -2.39 -0.01 3.41 16 28 H 0.06 2.03 8.11 -2.38 -0.02 2.01 16 29 H 0.26 13.67 8.32 -92.71 -0.77 12.90 16 30 H 0.07 3.00 7.14 -2.39 -0.02 2.98 16 31 H 0.07 3.19 8.14 -2.38 -0.02 3.17 16 32 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 33 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 34 H 0.11 5.17 7.02 -2.91 -0.02 5.15 16 Total: -1.00 -57.03 297.74 5.81 -51.21 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 1.11 Total: 15.58 kcal Atomic # 6 Polarization: -51.05 SS G_CDS: 3.44 Total: -47.61 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.24 Total: -47.26 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -0.92 Total: -12.00 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Atomic # 17 Polarization: -3.05 SS G_CDS: -0.08 Total: -3.12 kcal Total: -57.03 5.81 -51.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260507507.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.771 kcal (2) G-P(sol) polarization free energy of solvation -57.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds