Wall clock time and date at job start Mon Mar 30 2020 07:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35287 * 116.99958 * 2 1 4 4 N 1.32331 * 120.63576 * 359.97438 * 3 2 1 5 5 C 1.32739 * 120.92313 * 180.02562 * 4 3 2 6 6 S 1.76193 * 118.88102 * 180.02562 * 5 4 3 7 7 C 1.81004 * 99.99863 * 359.97438 * 6 5 4 8 8 N 1.32913 * 122.24209 * 359.97438 * 5 4 3 9 9 C 1.31825 * 121.16926 * 0.02562 * 8 5 4 10 10 C 1.50692 * 120.53317 * 180.02562 * 9 8 5 11 11 C 1.52999 * 117.50503 * 8.73985 * 10 9 8 12 12 C 1.53002 * 117.50087 * 300.07937 * 10 9 8 13 13 C 1.41034 * 118.92873 * 359.97438 * 9 8 5 14 14 C 1.41020 * 120.99860 * 180.02562 * 13 9 8 15 15 H 1.08002 * 120.00081 * 322.51316 * 14 13 9 16 16 C 1.39849 * 119.99601 * 142.50658 * 14 13 9 17 17 N 1.30944 * 120.00356 * 339.42454 * 16 14 13 18 18 Si 1.86803 * 119.99569 * 159.42173 * 16 14 13 19 19 H 1.48495 * 109.47368 * 59.99937 * 18 16 14 20 20 H 1.48494 * 109.46943 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47000 * 300.00320 * 18 16 14 22 22 H 1.08998 * 109.47313 * 300.00372 * 1 2 3 23 23 H 1.09002 * 109.47144 * 60.00649 * 1 2 3 24 24 H 1.08994 * 109.47281 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47190 * 179.97438 * 7 6 5 26 26 H 1.08997 * 109.46806 * 299.99611 * 7 6 5 27 27 H 1.08999 * 109.47064 * 59.99641 * 7 6 5 28 28 H 1.09000 * 115.54959 * 154.41432 * 10 9 8 29 29 H 1.09004 * 117.49246 * 0.02562 * 11 10 9 30 30 H 1.08997 * 117.50529 * 145.01867 * 11 10 9 31 31 H 1.08997 * 117.50557 * 214.98325 * 12 10 9 32 32 H 1.09005 * 117.49640 * 359.97438 * 12 10 9 33 33 H 0.96999 * 120.00035 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2054 0.0000 4 7 1.3348 2.3232 -0.0005 5 6 1.9315 3.5089 -0.0010 6 16 0.9359 4.9626 -0.0010 7 6 -0.7124 4.2146 -0.0010 8 7 3.2544 3.6370 -0.0005 9 6 4.0423 2.5800 0.0000 10 6 5.5405 2.7419 0.0011 11 6 6.0987 4.1513 0.2078 12 6 6.1707 3.4941 -1.1728 13 6 3.4603 1.2954 0.0005 14 6 4.2616 0.1350 0.0016 15 1 5.1794 0.1120 -0.5672 16 6 3.8679 -0.9859 0.7394 17 7 3.0139 -0.8552 1.7234 18 14 4.5603 -2.6697 0.3210 19 1 6.0381 -2.6468 0.4644 20 1 3.9886 -3.6831 1.2436 21 1 4.2041 -3.0177 -1.0781 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -1.4679 5.0002 -0.0005 26 1 -0.8309 3.5966 -0.8910 27 1 -0.8309 3.5965 0.8889 28 1 6.1028 1.9105 0.4261 29 1 5.3822 4.9615 0.3434 30 1 7.0285 4.2472 0.7686 31 1 7.1477 3.1579 -1.5198 32 1 5.5016 3.8715 -1.9461 33 1 2.7405 -1.6328 2.2348 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260686159.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:43 Heat of formation + Delta-G solvation = 22.952589 kcal Electronic energy + Delta-G solvation = -18326.596101 eV Core-core repulsion = 15479.693064 eV Total energy + Delta-G solvation = -2846.903037 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.52147 -37.29909 -35.88452 -34.05939 -31.50208 -30.53490 -28.39568 -26.62238 -25.91819 -23.35089 -22.34326 -21.64041 -20.01283 -17.83154 -17.41880 -16.42880 -15.37686 -15.21213 -14.94921 -14.74686 -13.71049 -13.61589 -13.45520 -13.38484 -12.88868 -12.64855 -12.15942 -11.97338 -11.48894 -11.19496 -11.14126 -10.91270 -10.87688 -10.71799 -10.65671 -10.10958 -10.09124 -9.69793 -9.44534 -9.13578 -8.57369 -8.06141 -7.90677 -7.06653 -6.79760 -4.47611 2.31404 2.34860 2.67016 2.99715 3.01205 3.02766 3.07522 3.83839 4.26916 4.47640 4.66615 5.32152 5.34872 5.55032 5.66161 5.69553 5.70769 5.87637 5.93994 5.99966 6.09982 6.22249 6.27442 6.30682 6.43060 6.45976 6.81984 6.94401 6.99151 7.00566 7.37066 7.99312 8.10007 8.36883 8.55626 8.83359 9.45237 10.00687 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016417 B = 0.009240 C = 0.006193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.140413 B = 3029.589433 C = 4519.859603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.268 6.268 3 C 0.302 3.698 4 N -0.561 5.561 5 C 0.189 3.811 6 S -0.070 6.070 7 C -0.124 4.124 8 N -0.481 5.481 9 C 0.085 3.915 10 C -0.064 4.064 11 C -0.172 4.172 12 C -0.175 4.175 13 C 0.033 3.967 14 C -0.430 4.430 15 H 0.091 0.909 16 C 0.082 3.918 17 N -0.755 5.755 18 Si 0.912 3.088 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.262 1.262 22 H 0.044 0.956 23 H 0.040 0.960 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.686 1.527 -1.970 3.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.172 6.172 3 C 0.107 3.893 4 N -0.294 5.294 5 C -0.182 4.182 6 S 0.160 5.840 7 C -0.294 4.294 8 N -0.199 5.199 9 C -0.062 4.062 10 C -0.083 4.083 11 C -0.209 4.209 12 C -0.213 4.213 13 C 0.024 3.976 14 C -0.460 4.460 15 H 0.109 0.891 16 C -0.140 4.140 17 N -0.378 5.378 18 Si 0.736 3.264 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.187 1.187 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.135 0.865 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.052 3.145 -1.760 4.147 hybrid contribution -0.017 -2.961 -0.002 2.961 sum -2.070 0.184 -1.762 2.724 Atomic orbital electron populations 1.22538 0.81211 1.00870 1.00599 1.86341 1.18985 1.24331 1.87512 1.20289 0.89380 0.82976 0.96666 1.67581 1.41623 0.98374 1.21824 1.22693 0.90238 0.92480 1.12800 1.84843 0.98307 1.06103 1.94764 1.23210 0.96176 1.03887 1.06101 1.67269 1.03519 1.34731 1.14371 1.20207 0.92880 0.86954 1.06180 1.20456 0.90230 0.95279 1.02315 1.22865 1.01902 0.97197 0.98954 1.22883 1.01278 1.05101 0.92015 1.18057 0.89410 0.94437 0.95716 1.19213 1.07003 0.95477 1.24288 0.89113 1.25820 0.93906 1.01113 0.93202 1.69745 1.23095 1.33170 1.11741 0.86292 0.79878 0.80457 0.79806 1.18892 1.20290 1.18657 0.93753 0.94139 0.90488 0.89377 0.90308 0.90252 0.86484 0.88112 0.89756 0.89508 0.89414 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.86 10.41 101.05 1.05 1.91 16 2 O -0.27 -6.50 7.44 -17.55 -0.13 -6.63 16 3 C 0.30 7.81 7.03 -15.90 -0.11 7.70 16 4 N -0.56 -13.79 8.02 -12.84 -0.10 -13.89 16 5 C 0.19 4.58 7.86 -90.37 -0.71 3.87 16 6 S -0.07 -1.37 22.89 -107.50 -2.46 -3.83 16 7 C -0.12 -2.00 9.60 101.05 0.97 -1.02 16 8 N -0.48 -11.94 9.42 -9.06 -0.09 -12.03 16 9 C 0.09 2.10 6.55 -81.54 -0.53 1.57 16 10 C -0.06 -1.32 5.46 -91.77 -0.50 -1.82 16 11 C -0.17 -3.09 10.04 -26.70 -0.27 -3.36 16 12 C -0.17 -3.09 10.24 -26.69 -0.27 -3.37 16 13 C 0.03 0.85 5.40 -106.35 -0.57 0.28 16 14 C -0.43 -10.69 7.89 -37.93 -0.30 -10.99 16 15 H 0.09 2.13 7.50 -52.49 -0.39 1.73 16 16 C 0.08 1.96 4.47 -17.33 -0.08 1.88 16 17 N -0.75 -18.75 11.20 55.54 0.62 -18.13 16 18 Si 0.91 17.89 29.61 -169.99 -5.03 12.86 16 19 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 20 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 H 0.04 0.86 8.12 -51.93 -0.42 0.44 16 23 H 0.04 0.74 8.12 -51.93 -0.42 0.32 16 24 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 26 H 0.08 1.30 8.10 -51.92 -0.42 0.88 16 27 H 0.08 1.34 8.10 -51.92 -0.42 0.92 16 28 H 0.12 2.38 7.33 -51.93 -0.38 2.00 16 29 H 0.10 1.95 7.61 -51.93 -0.40 1.56 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.29 6.51 8.30 -40.82 -0.34 6.17 16 LS Contribution 298.72 15.07 4.50 4.50 Total: -1.00 -28.25 298.72 -8.12 -36.37 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -4.10 Total: 4.14 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -1.33 Total: -3.35 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.43 Total: -44.05 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.13 Total: -6.63 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.46 Total: -3.83 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.25 -8.12 -36.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260686159.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.321 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds