Wall clock time and date at job start Mon Mar 30 2020 06:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38197 * 120.13884 * 2 1 4 4 C 1.38346 * 120.25329 * 180.09090 * 3 2 1 5 5 Cl 1.73591 * 119.99681 * 179.56574 * 4 3 2 6 6 C 1.38544 * 120.00522 * 359.58757 * 4 3 2 7 7 C 1.37937 * 119.61355 * 359.95831 * 6 4 3 8 8 C 1.38004 * 120.65381 * 0.85150 * 7 6 4 9 9 O 1.36080 * 120.51690 * 178.59230 * 8 7 6 10 10 C 1.43172 * 115.60448 * 289.21928 * 9 8 7 11 11 C 1.51440 * 110.83280 * 86.61319 * 10 9 8 12 12 C 1.52120 * 113.45704 * 294.64096 * 11 10 9 13 13 H 1.09002 * 109.20043 * 307.46932 * 12 11 10 14 14 C 1.50703 * 109.20674 * 188.12408 * 12 11 10 15 15 H 1.08004 * 120.00080 * 238.68526 * 14 12 11 16 16 C 1.37877 * 119.99793 * 58.69528 * 14 12 11 17 17 N 1.31518 * 119.99905 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 119.99863 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47375 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47234 * 119.99645 * 18 16 14 21 21 H 1.48502 * 109.46961 * 239.99175 * 18 16 14 22 22 C 1.51713 * 120.06206 * 181.47460 * 7 6 4 23 23 H 1.08991 * 109.47083 * 269.97667 * 1 2 3 24 24 H 1.09000 * 109.47361 * 29.97787 * 1 2 3 25 25 H 1.09000 * 109.46834 * 149.97397 * 1 2 3 26 26 H 1.07998 * 119.87266 * 0.07312 * 3 2 1 27 27 H 1.08002 * 120.19058 * 179.97438 * 6 4 3 28 28 H 1.09002 * 109.19992 * 206.95008 * 10 9 8 29 29 H 1.08998 * 109.19531 * 326.27872 * 10 9 8 30 30 H 1.08997 * 108.68528 * 55.72991 * 11 10 9 31 31 H 1.09005 * 108.68017 * 173.66942 * 11 10 9 32 32 H 0.96997 * 119.99844 * 180.02562 * 17 16 14 33 33 H 1.09004 * 109.59641 * 7.43618 * 22 7 6 34 34 H 1.08996 * 109.59910 * 127.90434 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.1951 0.0000 4 6 3.5843 1.1979 -0.0019 5 17 4.4491 2.7030 -0.0133 6 6 4.2795 -0.0004 0.0048 7 6 3.5843 -1.1918 0.0143 8 6 2.2044 -1.2013 -0.0006 9 8 1.5216 -2.3782 -0.0200 10 6 1.5918 -3.1141 -1.2461 11 6 2.8158 -4.0056 -1.2699 12 6 4.1269 -3.2342 -1.2743 13 1 4.1097 -2.5027 -2.0823 14 6 5.2664 -4.1944 -1.4991 15 1 6.0559 -4.2765 -0.7668 16 6 5.3010 -4.9680 -2.6399 17 7 4.3394 -4.8682 -3.5316 18 14 6.7131 -6.1588 -2.9183 19 1 7.6579 -6.0821 -1.7753 20 1 6.1807 -7.5406 -3.0292 21 1 7.4233 -5.7999 -4.1721 22 6 4.3350 -2.5095 0.0555 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6610 2.1305 0.0012 27 1 5.3596 -0.0018 0.0030 28 1 0.6979 -3.7297 -1.3464 29 1 1.6412 -2.4153 -2.0812 30 1 2.7934 -4.6529 -0.3932 31 1 2.7757 -4.6298 -2.1626 32 1 4.3636 -5.4127 -4.3339 33 1 5.3979 -2.3202 0.2062 34 1 3.9515 -3.1234 0.8704 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261107570.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:57 Heat of formation + Delta-G solvation = -40.396105 kcal Electronic energy + Delta-G solvation = -18202.481810 eV Core-core repulsion = 15318.495310 eV Total energy + Delta-G solvation = -2883.986500 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.17543 -37.38095 -36.04428 -35.18855 -32.84254 -31.11450 -30.66870 -27.43892 -26.68527 -25.29257 -23.23147 -21.19024 -20.68838 -19.33056 -17.35356 -16.60261 -16.10160 -15.54094 -14.87752 -14.54994 -13.95629 -13.60462 -13.28075 -12.95448 -12.72377 -12.62353 -12.37094 -12.28467 -12.16161 -11.74010 -11.18344 -11.03929 -10.97903 -10.80960 -10.63172 -10.49250 -10.02208 -9.68682 -9.60988 -9.43207 -8.85579 -8.40873 -8.32582 -7.95340 -6.07558 -4.15501 1.34511 1.53833 2.31274 3.24776 3.33415 3.37135 3.66911 4.34846 4.39891 4.96722 5.02545 5.21173 5.32560 5.54483 5.64799 5.75082 5.77086 5.84382 5.98210 6.05484 6.09174 6.31533 6.33405 6.41906 6.45279 6.58545 6.74848 6.90916 6.97820 7.05255 7.35817 7.58188 7.86143 7.94617 8.08654 8.34874 8.88596 9.50072 10.96862 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022114 B = 0.006037 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.869392 B = 4637.070285 C = 5578.138709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.096 4.096 3 C -0.115 4.115 4 C -0.041 4.041 5 Cl -0.084 7.084 6 C -0.102 4.102 7 C -0.077 4.077 8 C 0.110 3.890 9 O -0.332 6.332 10 C 0.067 3.933 11 C -0.150 4.150 12 C 0.054 3.946 13 H 0.026 0.974 14 C -0.510 4.510 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.073 4.073 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.129 0.871 27 H 0.134 0.866 28 H 0.082 0.918 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.113 0.887 32 H 0.261 0.739 33 H 0.066 0.934 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.630 9.729 5.583 12.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.097 4.097 3 C -0.134 4.134 4 C -0.068 4.068 5 Cl -0.055 7.055 6 C -0.120 4.120 7 C -0.078 4.078 8 C 0.066 3.934 9 O -0.249 6.249 10 C -0.006 4.006 11 C -0.188 4.188 12 C 0.036 3.964 13 H 0.044 0.956 14 C -0.548 4.548 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.531 5.531 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.110 4.110 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.147 0.853 27 H 0.152 0.848 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.131 0.869 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.715 9.685 5.540 12.536 hybrid contribution 0.999 -0.470 -0.459 1.196 sum -4.716 9.216 5.081 11.532 Atomic orbital electron populations 1.20598 0.90358 1.02662 1.02306 1.19973 0.96646 0.91415 1.01653 1.20605 0.91703 0.97817 1.03235 1.20841 0.92228 0.86536 1.07151 1.98333 1.77220 1.32796 1.97160 1.20844 1.00363 0.89626 1.01194 1.20662 0.93479 0.96705 0.96962 1.18368 0.89609 0.85865 0.99554 1.86193 1.70299 1.30953 1.37454 1.22793 1.00277 0.94083 0.83461 1.21849 0.93438 0.99365 1.04128 1.18417 0.93333 0.94215 0.90440 0.95627 1.21272 1.06832 1.21718 1.04945 0.92354 1.24976 0.96109 0.97103 0.95902 1.69808 1.32262 1.40819 1.10185 0.86517 0.82413 0.80831 0.78165 1.19733 1.20981 1.21009 1.21088 0.98069 0.90578 1.01241 0.91209 0.91874 0.90967 0.85279 0.84783 0.89987 0.93392 0.93945 0.86921 0.92910 0.91571 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 9.80 36.00 0.35 -0.93 16 2 C -0.10 -1.50 5.90 -104.39 -0.62 -2.11 16 3 C -0.11 -1.67 9.48 -39.56 -0.37 -2.04 16 4 C -0.04 -0.64 6.33 -39.43 -0.25 -0.88 16 5 Cl -0.08 -1.14 28.96 -51.86 -1.50 -2.64 16 6 C -0.10 -1.73 9.48 -39.58 -0.38 -2.11 16 7 C -0.08 -1.46 5.08 -104.32 -0.53 -1.99 16 8 C 0.11 2.02 5.58 -39.42 -0.22 1.80 16 9 O -0.33 -6.30 9.02 -19.99 -0.18 -6.48 16 10 C 0.07 1.30 6.49 36.37 0.24 1.53 16 11 C -0.15 -3.40 4.73 -27.97 -0.13 -3.53 16 12 C 0.05 1.31 1.91 -92.29 -0.18 1.13 16 13 H 0.03 0.68 7.89 -51.93 -0.41 0.27 16 14 C -0.51 -13.47 8.45 -34.44 -0.29 -13.76 16 15 H 0.06 1.53 7.64 -52.48 -0.40 1.12 16 16 C 0.06 1.60 5.26 -17.82 -0.09 1.50 16 17 N -0.89 -24.45 11.16 55.43 0.62 -23.83 16 18 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.07 -1.51 4.93 -27.45 -0.14 -1.64 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 25 H 0.07 0.94 7.51 -51.93 -0.39 0.55 16 26 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 27 H 0.13 2.14 7.99 -52.49 -0.42 1.72 16 28 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.05 0.94 7.90 -51.93 -0.41 0.53 16 30 H 0.04 0.96 8.00 -51.93 -0.42 0.54 16 31 H 0.11 2.84 5.64 -51.93 -0.29 2.55 16 32 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.07 1.33 7.62 -51.93 -0.40 0.94 16 34 H 0.07 1.40 7.87 -51.93 -0.41 0.99 16 LS Contribution 292.21 15.07 4.40 4.40 Total: -1.00 -27.06 292.21 -8.65 -35.71 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -4.37 Total: 0.20 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -2.60 Total: -23.04 kcal Atomic # 7 Polarization: -24.45 SS G_CDS: 0.62 Total: -23.83 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.18 Total: -6.48 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.06 -8.65 -35.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107570.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.685 kcal (2) G-P(sol) polarization free energy of solvation -27.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds