Wall clock time and date at job start Mon Mar 30 2020 06:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38197 * 120.13884 * 2 1 4 4 C 1.38346 * 120.25329 * 180.09090 * 3 2 1 5 5 Cl 1.73591 * 119.99681 * 179.56574 * 4 3 2 6 6 C 1.38544 * 120.00522 * 359.58757 * 4 3 2 7 7 C 1.37937 * 119.61355 * 359.95831 * 6 4 3 8 8 C 1.38004 * 120.65381 * 0.85150 * 7 6 4 9 9 O 1.36080 * 120.51690 * 178.59230 * 8 7 6 10 10 C 1.43172 * 115.60448 * 289.21928 * 9 8 7 11 11 C 1.51440 * 110.83280 * 86.61319 * 10 9 8 12 12 C 1.52120 * 113.45704 * 294.64096 * 11 10 9 13 13 H 1.09002 * 109.20043 * 307.46932 * 12 11 10 14 14 C 1.50703 * 109.20674 * 188.12408 * 12 11 10 15 15 H 1.08004 * 120.00080 * 238.68526 * 14 12 11 16 16 C 1.37877 * 119.99793 * 58.69528 * 14 12 11 17 17 N 1.31518 * 119.99905 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 119.99863 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47375 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47234 * 119.99645 * 18 16 14 21 21 H 1.48502 * 109.46961 * 239.99175 * 18 16 14 22 22 C 1.51713 * 120.06206 * 181.47460 * 7 6 4 23 23 H 1.08991 * 109.47083 * 269.97667 * 1 2 3 24 24 H 1.09000 * 109.47361 * 29.97787 * 1 2 3 25 25 H 1.09000 * 109.46834 * 149.97397 * 1 2 3 26 26 H 1.07998 * 119.87266 * 0.07312 * 3 2 1 27 27 H 1.08002 * 120.19058 * 179.97438 * 6 4 3 28 28 H 1.09002 * 109.19992 * 206.95008 * 10 9 8 29 29 H 1.08998 * 109.19531 * 326.27872 * 10 9 8 30 30 H 1.08997 * 108.68528 * 55.72991 * 11 10 9 31 31 H 1.09005 * 108.68017 * 173.66942 * 11 10 9 32 32 H 0.96997 * 119.99844 * 180.02562 * 17 16 14 33 33 H 1.09004 * 109.59641 * 7.43618 * 22 7 6 34 34 H 1.08996 * 109.59910 * 127.90434 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.1951 0.0000 4 6 3.5843 1.1979 -0.0019 5 17 4.4491 2.7030 -0.0133 6 6 4.2795 -0.0004 0.0048 7 6 3.5843 -1.1918 0.0143 8 6 2.2044 -1.2013 -0.0006 9 8 1.5216 -2.3782 -0.0200 10 6 1.5918 -3.1141 -1.2461 11 6 2.8158 -4.0056 -1.2699 12 6 4.1269 -3.2342 -1.2743 13 1 4.1097 -2.5027 -2.0823 14 6 5.2664 -4.1944 -1.4991 15 1 6.0559 -4.2765 -0.7668 16 6 5.3010 -4.9680 -2.6399 17 7 4.3394 -4.8682 -3.5316 18 14 6.7131 -6.1588 -2.9183 19 1 7.6579 -6.0821 -1.7753 20 1 6.1807 -7.5406 -3.0292 21 1 7.4233 -5.7999 -4.1721 22 6 4.3350 -2.5095 0.0555 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6610 2.1305 0.0012 27 1 5.3596 -0.0018 0.0030 28 1 0.6979 -3.7297 -1.3464 29 1 1.6412 -2.4153 -2.0812 30 1 2.7934 -4.6529 -0.3932 31 1 2.7757 -4.6298 -2.1626 32 1 4.3636 -5.4127 -4.3339 33 1 5.3979 -2.3202 0.2062 34 1 3.9515 -3.1234 0.8704 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261107570.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:56 Heat of formation + Delta-G solvation = -53.062985 kcal Electronic energy + Delta-G solvation = -18203.031087 eV Core-core repulsion = 15318.495310 eV Total energy + Delta-G solvation = -2884.535777 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.56710 -38.73836 -37.26420 -36.90774 -34.43405 -32.79145 -32.08331 -29.06112 -27.87526 -27.02595 -24.92260 -22.52919 -22.15698 -21.05393 -18.82580 -18.45157 -17.58808 -16.82873 -16.56863 -16.23020 -15.38725 -14.95718 -14.82062 -14.46180 -14.30709 -13.81669 -13.79874 -13.65586 -13.54872 -12.99914 -12.91885 -12.76581 -12.52328 -12.31526 -12.10003 -11.91094 -11.83036 -11.49313 -11.27299 -11.07165 -10.71749 -10.37645 -9.66023 -9.29785 -8.11185 -6.26745 0.03832 0.25741 1.11155 1.39534 1.42341 1.52970 2.33957 2.41657 2.99373 3.14638 3.73590 3.76766 4.13024 4.21288 4.29842 4.33360 4.50927 4.56800 4.59861 4.63399 4.73759 4.80799 4.85822 5.07160 5.15355 5.17223 5.23283 5.34018 5.44375 5.54031 5.59701 5.66157 5.91426 6.06993 6.34134 6.55109 6.83991 7.41743 8.91704 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022114 B = 0.006037 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.869392 B = 4637.070285 C = 5578.138709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.091 4.091 3 C -0.106 4.106 4 C -0.041 4.041 5 Cl -0.064 7.064 6 C -0.112 4.112 7 C -0.100 4.100 8 C 0.083 3.917 9 O -0.332 6.332 10 C 0.078 3.922 11 C -0.143 4.143 12 C 0.056 3.944 13 H -0.008 1.008 14 C -0.532 4.532 15 H 0.054 0.946 16 C 0.015 3.985 17 N -0.915 5.915 18 Si 0.954 3.046 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.281 1.281 22 C -0.063 4.063 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.064 0.936 26 H 0.164 0.836 27 H 0.137 0.863 28 H 0.109 0.891 29 H 0.041 0.959 30 H 0.035 0.965 31 H 0.087 0.913 32 H 0.262 0.738 33 H 0.063 0.937 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.440 11.198 6.079 14.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.092 4.092 3 C -0.124 4.124 4 C -0.067 4.067 5 Cl -0.035 7.035 6 C -0.131 4.131 7 C -0.101 4.101 8 C 0.039 3.961 9 O -0.250 6.250 10 C 0.004 3.996 11 C -0.181 4.181 12 C 0.038 3.962 13 H 0.010 0.990 14 C -0.570 4.570 15 H 0.072 0.928 16 C -0.184 4.184 17 N -0.554 5.554 18 Si 0.780 3.220 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.207 1.207 22 C -0.100 4.100 23 H 0.103 0.897 24 H 0.108 0.892 25 H 0.083 0.917 26 H 0.181 0.819 27 H 0.155 0.845 28 H 0.127 0.873 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.524 11.164 6.048 14.275 hybrid contribution 1.270 -0.813 -0.601 1.623 sum -5.254 10.351 5.447 12.822 Atomic orbital electron populations 1.20694 0.87887 1.03681 1.03564 1.20325 0.98435 0.90518 0.99926 1.20994 0.91356 0.98797 1.01257 1.20946 0.92905 0.86803 1.06066 1.98343 1.76960 1.31158 1.96997 1.20900 1.00678 0.89872 1.01634 1.20537 0.94055 0.96203 0.99263 1.18656 0.89586 0.86581 1.01298 1.86189 1.70176 1.31545 1.37041 1.22622 0.99542 0.93747 0.83713 1.21682 0.94580 0.99480 1.02351 1.18326 0.93547 0.93344 0.91015 0.98995 1.21617 1.07649 1.22531 1.05184 0.92791 1.25702 0.98359 0.98604 0.95716 1.69935 1.33580 1.41463 1.10459 0.85565 0.79636 0.78834 0.78000 1.19290 1.20433 1.20737 1.20836 0.98338 0.91715 0.99128 0.89682 0.89162 0.91686 0.81890 0.84512 0.87265 0.94088 0.94666 0.89526 0.92823 0.91826 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.21 9.80 71.23 0.70 -1.51 16 2 C -0.09 -2.63 5.90 -19.72 -0.12 -2.75 16 3 C -0.11 -2.74 9.48 22.29 0.21 -2.53 16 4 C -0.04 -1.17 6.33 22.37 0.14 -1.03 16 5 Cl -0.06 -1.57 28.96 -2.72 -0.08 -1.65 16 6 C -0.11 -3.78 9.48 22.27 0.21 -3.57 16 7 C -0.10 -3.82 5.08 -19.67 -0.10 -3.92 16 8 C 0.08 2.98 5.58 22.37 0.12 3.11 16 9 O -0.33 -12.49 9.02 -94.45 -0.85 -13.34 16 10 C 0.08 3.00 6.49 71.47 0.46 3.46 16 11 C -0.14 -6.69 4.73 29.79 0.14 -6.55 16 12 C 0.06 2.81 1.91 -11.87 -0.02 2.79 16 13 H -0.01 -0.45 7.89 -2.39 -0.02 -0.47 16 14 C -0.53 -29.01 8.45 25.60 0.22 -28.80 16 15 H 0.05 2.90 7.64 -2.91 -0.02 2.88 16 16 C 0.01 0.80 5.26 84.65 0.45 1.25 16 17 N -0.91 -51.38 11.16 21.45 0.24 -51.15 16 18 Si 0.95 42.99 29.54 68.60 2.03 45.02 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 C -0.06 -2.71 4.93 30.13 0.15 -2.56 16 23 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 25 H 0.06 1.52 7.51 -2.39 -0.02 1.51 16 26 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 27 H 0.14 4.39 7.99 -2.91 -0.02 4.36 16 28 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 29 H 0.04 1.62 7.90 -2.39 -0.02 1.60 16 30 H 0.03 1.64 8.00 -2.39 -0.02 1.62 16 31 H 0.09 4.53 5.64 -2.38 -0.01 4.52 16 32 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 33 H 0.06 2.67 7.62 -2.39 -0.02 2.66 16 34 H 0.06 2.66 7.87 -2.39 -0.02 2.64 16 Total: -1.00 -58.93 292.21 5.00 -53.94 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 1.10 Total: 9.78 kcal Atomic # 6 Polarization: -45.16 SS G_CDS: 2.56 Total: -42.60 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.24 Total: -51.15 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.85 Total: -13.34 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -58.93 5.00 -53.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107570.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.872 kcal (2) G-P(sol) polarization free energy of solvation -58.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds