Wall clock time and date at job start Mon Mar 30 2020 06:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38011 * 120.03276 * 2 1 4 4 C 1.39095 * 120.23462 * 179.97438 * 3 2 1 5 5 C 1.38407 * 119.72016 * 359.95172 * 4 3 2 6 6 C 1.38467 * 119.84160 * 359.89759 * 5 4 3 7 7 C 1.50699 * 119.84629 * 180.10602 * 6 5 4 8 8 C 1.38247 * 120.30492 * 0.36575 * 6 5 4 9 9 Cl 1.73597 * 120.02218 * 179.80361 * 8 6 5 10 10 C 1.50768 * 121.40258 * 180.26130 * 5 4 3 11 11 H 1.08996 * 109.39947 * 102.22840 * 10 5 4 12 12 C 1.50703 * 109.43600 * 222.12451 * 10 5 4 13 13 H 1.07997 * 119.99994 * 32.43141 * 12 10 5 14 14 C 1.37884 * 119.99806 * 212.43386 * 12 10 5 15 15 N 1.31509 * 119.99672 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 119.99996 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46999 * 90.00294 * 16 14 12 18 18 H 1.48498 * 109.47234 * 210.00400 * 16 14 12 19 19 H 1.48504 * 109.47045 * 330.00453 * 16 14 12 20 20 C 1.53075 * 109.67949 * 342.18670 * 10 5 4 21 21 C 1.53404 * 108.29768 * 48.22092 * 20 10 5 22 22 O 1.35875 * 118.48389 * 179.76524 * 4 3 2 23 23 H 1.08997 * 109.46754 * 269.97708 * 1 2 3 24 24 H 1.08998 * 109.46822 * 29.97142 * 1 2 3 25 25 H 1.08991 * 109.47364 * 149.97621 * 1 2 3 26 26 H 1.08005 * 119.87628 * 359.94578 * 3 2 1 27 27 H 1.08998 * 109.47381 * 275.72741 * 7 6 5 28 28 H 1.08995 * 109.46807 * 35.73381 * 7 6 5 29 29 H 1.09005 * 109.46836 * 155.72523 * 7 6 5 30 30 H 0.97000 * 119.99838 * 179.97438 * 15 14 12 31 31 H 1.08994 * 109.70003 * 288.51572 * 20 10 5 32 32 H 1.09003 * 109.69369 * 167.92031 * 20 10 5 33 33 H 1.09001 * 109.68554 * 175.54023 * 21 20 10 34 34 H 1.08997 * 109.71572 * 54.99848 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1948 0.0000 4 6 3.5887 1.1997 0.0005 5 6 4.2791 0.0001 0.0021 6 6 3.5818 -1.1961 0.0052 7 6 4.3334 -2.5023 0.0093 8 6 2.1994 -1.1978 -0.0008 9 17 1.3326 -2.7019 -0.0019 10 6 5.7862 -0.0388 0.0086 11 1 6.1382 -0.2671 1.0146 12 6 6.2644 -1.1043 -0.9439 13 1 5.6977 -1.3246 -1.8364 14 6 7.4256 -1.7979 -0.6757 15 7 8.1154 -1.5299 0.4114 16 14 8.0180 -3.1191 -1.8559 17 1 8.9111 -2.5094 -2.8736 18 1 8.7638 -4.1583 -1.1016 19 1 6.8499 -3.7399 -2.5307 20 6 6.3389 1.3202 -0.4283 21 6 5.6120 2.4134 0.3652 22 8 4.2325 2.3963 -0.0044 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8897 -0.5142 26 1 1.6562 2.1293 -0.0009 27 1 4.6040 -2.7691 -1.0123 28 1 5.2373 -2.3994 0.6096 29 1 3.7024 -3.2832 0.4338 30 1 8.9321 -2.0181 0.6002 31 1 6.1640 1.4623 -1.4947 32 1 7.4082 1.3655 -0.2216 33 1 6.0431 3.3864 0.1295 34 1 5.7083 2.2182 1.4332 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261107652.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:28 Heat of formation + Delta-G solvation = -51.898921 kcal Electronic energy + Delta-G solvation = -18538.958315 eV Core-core repulsion = 15654.473016 eV Total energy + Delta-G solvation = -2884.485299 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.65493 -39.01089 -37.12046 -36.68794 -34.03486 -33.01384 -31.84362 -29.29047 -27.64721 -27.09021 -24.91035 -23.58614 -21.91488 -20.51579 -18.67165 -18.09219 -17.57314 -17.14672 -16.43032 -15.91013 -15.28891 -15.08999 -14.71275 -14.55961 -14.24218 -13.90872 -13.77359 -13.40580 -13.08579 -13.00520 -12.90415 -12.81139 -12.61381 -12.40012 -12.33014 -12.14624 -11.89135 -11.43223 -11.29880 -11.05703 -10.82758 -10.48788 -9.31219 -8.87677 -8.13213 -6.15304 0.35842 0.41760 1.31936 1.38264 1.42445 1.49988 2.38655 2.45339 2.74262 3.15787 3.89578 3.93532 4.12402 4.22278 4.27416 4.33851 4.51469 4.53999 4.73681 4.75725 4.86432 4.90158 5.01196 5.05329 5.08913 5.15709 5.28499 5.45627 5.48121 5.55290 5.65092 5.77813 5.82017 5.96833 6.28680 6.52829 6.86387 7.43245 8.94663 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017898 B = 0.008857 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.036816 B = 3160.609832 C = 4483.655718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.055 4.055 3 C -0.155 4.155 4 C 0.114 3.886 5 C -0.146 4.146 6 C -0.037 4.037 7 C -0.087 4.087 8 C -0.087 4.087 9 Cl -0.069 7.069 10 C 0.074 3.926 11 H 0.038 0.962 12 C -0.493 4.493 13 H 0.047 0.953 14 C 0.026 3.974 15 N -0.920 5.920 16 Si 0.934 3.066 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.267 1.267 20 C -0.136 4.136 21 C 0.062 3.938 22 O -0.324 6.324 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.156 0.844 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.262 0.738 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.130 0.870 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.549 3.745 0.262 12.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.056 4.056 3 C -0.173 4.173 4 C 0.069 3.931 5 C -0.148 4.148 6 C -0.038 4.038 7 C -0.144 4.144 8 C -0.113 4.113 9 Cl -0.040 7.040 10 C 0.055 3.945 11 H 0.056 0.944 12 C -0.532 4.532 13 H 0.065 0.935 14 C -0.172 4.172 15 N -0.560 5.560 16 Si 0.761 3.239 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.191 1.191 20 C -0.175 4.175 21 C -0.012 4.012 22 O -0.238 6.238 23 H 0.105 0.895 24 H 0.107 0.893 25 H 0.092 0.908 26 H 0.174 0.826 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.148 0.852 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.534 3.730 0.311 12.126 hybrid contribution 1.195 -1.140 -0.494 1.724 sum -10.339 2.589 -0.182 10.660 Atomic orbital electron populations 1.20851 0.87604 1.04165 1.03756 1.19697 0.97969 0.89693 0.98264 1.20499 0.90147 0.98871 1.07799 1.19071 0.92188 0.84473 0.97349 1.20471 0.98355 0.91503 1.04438 1.19630 0.91481 0.96153 0.96492 1.20782 0.98958 0.92270 1.02349 1.20627 0.91167 0.87196 1.12344 1.98275 1.75982 1.32512 1.97229 1.17749 0.85660 0.93550 0.97511 0.94430 1.20955 1.07176 1.18434 1.06587 0.93500 1.25429 0.96845 0.98707 0.96267 1.69989 1.16703 1.42922 1.26378 0.85898 0.78712 0.79778 0.79543 1.20435 1.20970 1.19130 1.22198 1.00250 0.95931 0.99093 1.23174 0.78145 1.01368 0.98559 1.85865 1.26227 1.27623 1.84079 0.89534 0.89293 0.90832 0.82635 0.91739 0.91761 0.92471 0.92841 0.93060 0.91815 0.85247 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.34 9.62 71.24 0.69 -1.65 16 2 C -0.06 -1.71 5.88 -19.89 -0.12 -1.83 16 3 C -0.15 -5.03 9.59 22.42 0.22 -4.81 16 4 C 0.11 4.48 6.47 22.52 0.15 4.63 16 5 C -0.15 -6.46 5.42 -19.75 -0.11 -6.57 16 6 C -0.04 -1.54 5.75 -19.81 -0.11 -1.66 16 7 C -0.09 -3.76 7.81 71.24 0.56 -3.21 16 8 C -0.09 -3.10 6.31 22.30 0.14 -2.96 16 9 Cl -0.07 -2.12 25.52 -2.72 -0.07 -2.19 16 10 C 0.07 3.57 1.81 -12.24 -0.02 3.54 16 11 H 0.04 2.06 7.38 -2.39 -0.02 2.04 16 12 C -0.49 -25.52 4.56 25.60 0.12 -25.40 16 13 H 0.05 2.49 7.05 -2.91 -0.02 2.47 16 14 C 0.03 1.39 5.02 84.66 0.42 1.81 16 15 N -0.92 -50.83 12.83 21.45 0.28 -50.56 16 16 Si 0.93 42.15 29.54 68.60 2.03 44.17 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 C -0.14 -5.85 5.49 30.75 0.17 -5.68 16 21 C 0.06 2.16 7.03 72.12 0.51 2.66 16 22 O -0.32 -12.00 10.27 -92.14 -0.95 -12.95 16 23 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.09 1.55 8.09 -2.39 -0.02 1.53 16 25 H 0.07 1.58 6.91 -2.39 -0.02 1.56 16 26 H 0.16 4.08 8.06 -2.91 -0.02 4.06 16 27 H 0.06 2.90 6.75 -2.39 -0.02 2.88 16 28 H 0.06 3.14 6.08 -2.39 -0.01 3.12 16 29 H 0.06 2.18 6.66 -2.38 -0.02 2.16 16 30 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 31 H 0.05 2.24 8.10 -2.39 -0.02 2.22 16 32 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.13 3.52 8.14 -2.39 -0.02 3.50 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -57.24 286.16 4.99 -52.24 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 1.11 Total: 10.40 kcal Atomic # 6 Polarization: -43.72 SS G_CDS: 2.60 Total: -41.12 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.28 Total: -50.56 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.95 Total: -12.95 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -0.07 Total: -2.19 kcal Total: -57.24 4.99 -52.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107652.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.342 kcal (2) G-P(sol) polarization free energy of solvation -57.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds