Wall clock time and date at job start Mon Mar 30 2020 06:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38012 * 120.02646 * 2 1 4 4 C 1.39097 * 120.22572 * 180.02562 * 3 2 1 5 5 C 1.38409 * 119.72338 * 0.11784 * 4 3 2 6 6 C 1.38458 * 119.83723 * 359.81775 * 5 4 3 7 7 C 1.50710 * 119.84088 * 180.10114 * 6 5 4 8 8 C 1.38245 * 120.31191 * 0.12313 * 6 5 4 9 9 Cl 1.73602 * 120.02053 * 179.97438 * 8 6 5 10 10 C 1.50770 * 121.39751 * 179.77216 * 5 4 3 11 11 H 1.09000 * 109.43536 * 257.76600 * 10 5 4 12 12 C 1.50701 * 109.43507 * 137.85401 * 10 5 4 13 13 H 1.08000 * 119.99943 * 354.19587 * 12 10 5 14 14 C 1.37877 * 119.99997 * 174.19373 * 12 10 5 15 15 N 1.31519 * 119.99896 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00234 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47348 * 89.99363 * 16 14 12 18 18 H 1.48498 * 109.47520 * 210.00150 * 16 14 12 19 19 H 1.48506 * 109.46794 * 330.00214 * 16 14 12 20 20 C 1.53067 * 109.68922 * 17.83089 * 10 5 4 21 21 C 1.53413 * 108.30381 * 311.79742 * 20 10 5 22 22 O 1.35871 * 118.47960 * 180.39974 * 4 3 2 23 23 H 1.09004 * 109.46642 * 269.97923 * 1 2 3 24 24 H 1.08995 * 109.47144 * 29.97622 * 1 2 3 25 25 H 1.08994 * 109.47402 * 149.98033 * 1 2 3 26 26 H 1.07998 * 119.88368 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47164 * 90.40877 * 7 6 5 28 28 H 1.09005 * 109.46615 * 210.40797 * 7 6 5 29 29 H 1.08994 * 109.47027 * 330.40866 * 7 6 5 30 30 H 0.96997 * 119.99542 * 180.02562 * 15 14 12 31 31 H 1.09003 * 109.69456 * 71.49458 * 20 10 5 32 32 H 1.08998 * 109.70024 * 192.09691 * 20 10 5 33 33 H 1.09006 * 109.68095 * 305.00142 * 21 20 10 34 34 H 1.08998 * 109.71734 * 184.46888 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1977 1.1949 0.0000 4 6 3.5886 1.1997 -0.0005 5 6 4.2791 0.0001 -0.0035 6 6 3.5818 -1.1960 -0.0022 7 6 4.3335 -2.5023 -0.0031 8 6 2.1993 -1.1978 -0.0004 9 17 1.3326 -2.7020 0.0006 10 6 5.7862 -0.0387 -0.0093 11 1 6.1393 -0.2654 -1.0153 12 6 6.2641 -1.1052 0.9421 13 1 5.5549 -1.6309 1.5643 14 6 7.6066 -1.4098 1.0183 15 7 8.4702 -0.7693 0.2610 16 14 8.1988 -2.7323 2.1971 17 1 8.1935 -4.0479 1.5084 18 1 9.5782 -2.4140 2.6458 19 1 7.2954 -2.7864 3.3746 20 6 6.3388 1.3194 0.4302 21 6 5.6120 2.4144 -0.3613 22 8 4.2324 2.3962 0.0078 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3634 -0.8897 -0.5141 26 1 1.6562 2.1293 0.0004 27 1 4.5100 -2.8206 1.0242 28 1 3.7456 -3.2593 -0.5222 29 1 5.2883 -2.3716 -0.5122 30 1 9.4147 -0.9840 0.3144 31 1 6.1635 1.4595 1.4969 32 1 7.4081 1.3653 0.2238 33 1 5.7088 2.2207 -1.4296 34 1 6.0428 3.3871 -0.1241 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261107653.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:32 Heat of formation + Delta-G solvation = -34.466792 kcal Electronic energy + Delta-G solvation = -18517.600880 eV Core-core repulsion = 15633.871495 eV Total energy + Delta-G solvation = -2883.729385 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.15047 -37.56901 -35.73276 -35.07909 -32.48320 -31.12008 -30.37603 -27.86715 -26.17437 -25.44738 -23.20957 -21.98619 -20.42862 -18.92802 -16.88609 -16.55161 -15.92643 -15.60933 -14.56161 -14.43238 -13.79735 -13.72267 -13.10165 -12.93406 -12.63538 -12.53799 -12.46112 -11.93136 -11.78621 -11.55890 -11.24479 -11.13266 -10.97405 -10.82171 -10.57108 -10.46077 -10.01631 -9.99896 -9.76186 -9.28370 -9.03186 -8.50991 -7.80098 -7.37374 -6.14740 -4.14727 1.82235 1.86613 2.70191 3.23537 3.31475 3.34940 3.90391 4.18498 4.35954 5.16506 5.20441 5.30630 5.53638 5.68150 5.78827 5.80290 5.85917 5.92108 6.02448 6.10534 6.12585 6.27944 6.51645 6.64164 6.71572 6.75215 6.81023 6.91536 7.03002 7.30381 7.38941 7.50487 7.65881 7.84851 8.05896 8.21927 8.82077 9.45198 10.93596 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018810 B = 0.008448 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.217499 B = 3313.697224 C = 4589.145929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.065 4.065 3 C -0.159 4.159 4 C 0.132 3.868 5 C -0.115 4.115 6 C -0.022 4.022 7 C -0.107 4.107 8 C -0.078 4.078 9 Cl -0.088 7.088 10 C 0.084 3.916 11 H 0.048 0.952 12 C -0.507 4.507 13 H 0.070 0.930 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.889 3.111 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.141 4.141 21 C 0.054 3.946 22 O -0.325 6.325 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.126 0.874 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.100 0.900 30 H 0.262 0.738 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.860 1.767 -1.643 10.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.086 3.914 5 C -0.116 4.116 6 C -0.023 4.023 7 C -0.163 4.163 8 C -0.104 4.104 9 Cl -0.060 7.060 10 C 0.065 3.935 11 H 0.066 0.934 12 C -0.545 4.545 13 H 0.088 0.912 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.717 3.283 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.179 4.179 21 C -0.021 4.021 22 O -0.239 6.239 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.144 0.856 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.072 0.928 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.803 1.828 -1.635 10.105 hybrid contribution 0.583 -0.840 0.664 1.219 sum -9.220 0.988 -0.971 9.324 Atomic orbital electron populations 1.20747 0.90860 1.02702 1.02279 1.19207 0.95767 0.90755 1.00814 1.20144 0.91183 0.97316 1.09136 1.18803 0.91014 0.84997 0.96561 1.20469 0.99152 0.90174 1.01809 1.19571 0.90281 0.96651 0.95761 1.21201 1.00816 0.91468 1.02837 1.20476 0.91733 0.85541 1.12699 1.98277 1.76804 1.33555 1.97319 1.17758 0.83542 0.93762 0.98389 0.93387 1.21265 0.92511 1.18815 1.21925 0.91189 1.24917 0.96738 0.96498 0.95759 1.69894 1.02491 1.41315 1.39253 0.86618 0.78170 0.82069 0.81471 1.20452 1.21223 1.19792 1.22296 1.02370 0.94507 0.98758 1.23179 0.78677 1.01184 0.99029 1.85867 1.26219 1.27966 1.83850 0.91286 0.91685 0.91213 0.85585 0.90669 0.93867 0.88161 0.92813 0.92486 0.88474 0.92760 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.62 36.01 0.35 -1.06 16 2 C -0.06 -1.08 5.88 -104.66 -0.62 -1.70 16 3 C -0.16 -2.80 9.59 -39.35 -0.38 -3.18 16 4 C 0.13 2.66 6.47 -39.20 -0.25 2.41 16 5 C -0.11 -2.49 5.42 -104.44 -0.57 -3.06 16 6 C -0.02 -0.44 5.62 -104.53 -0.59 -1.03 16 7 C -0.11 -2.14 7.67 36.01 0.28 -1.87 16 8 C -0.08 -1.43 6.31 -39.54 -0.25 -1.67 16 9 Cl -0.09 -1.41 25.63 -51.86 -1.33 -2.74 16 10 C 0.08 1.96 1.62 -92.85 -0.15 1.81 16 11 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 12 C -0.51 -12.70 5.59 -34.44 -0.19 -12.90 16 13 H 0.07 1.76 5.10 -52.49 -0.27 1.49 16 14 C 0.06 1.60 5.33 -17.82 -0.09 1.51 16 15 N -0.89 -23.66 11.90 55.43 0.66 -23.00 16 16 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 20 C -0.14 -3.11 5.17 -26.48 -0.14 -3.24 16 21 C 0.05 1.00 7.03 37.37 0.26 1.26 16 22 O -0.32 -6.40 10.27 -19.33 -0.20 -6.60 16 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 25 H 0.07 0.87 6.91 -51.93 -0.36 0.51 16 26 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 27 H 0.07 1.53 6.59 -51.93 -0.34 1.19 16 28 H 0.04 0.77 6.90 -51.93 -0.36 0.41 16 29 H 0.10 2.20 5.92 -51.93 -0.31 1.89 16 30 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 32 H 0.10 2.28 6.88 -51.93 -0.36 1.92 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 283.38 15.07 4.27 4.27 Total: -1.00 -26.16 283.38 -8.04 -34.20 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -4.08 Total: 1.38 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -2.34 Total: -22.72 kcal Atomic # 7 Polarization: -23.66 SS G_CDS: 0.66 Total: -23.00 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.20 Total: -6.60 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -1.33 Total: -2.74 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -26.16 -8.04 -34.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107653.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.271 kcal (2) G-P(sol) polarization free energy of solvation -26.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds