Wall clock time and date at job start Mon Mar 30 2020 06:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38012 * 120.02646 * 2 1 4 4 C 1.39097 * 120.22572 * 180.02562 * 3 2 1 5 5 C 1.38409 * 119.72338 * 0.11784 * 4 3 2 6 6 C 1.38458 * 119.83723 * 359.81775 * 5 4 3 7 7 C 1.50710 * 119.84088 * 180.10114 * 6 5 4 8 8 C 1.38245 * 120.31191 * 0.12313 * 6 5 4 9 9 Cl 1.73602 * 120.02053 * 179.97438 * 8 6 5 10 10 C 1.50770 * 121.39751 * 179.77216 * 5 4 3 11 11 H 1.09000 * 109.43536 * 257.76600 * 10 5 4 12 12 C 1.50701 * 109.43507 * 137.85401 * 10 5 4 13 13 H 1.08000 * 119.99943 * 354.19587 * 12 10 5 14 14 C 1.37877 * 119.99997 * 174.19373 * 12 10 5 15 15 N 1.31519 * 119.99896 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00234 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47348 * 89.99363 * 16 14 12 18 18 H 1.48498 * 109.47520 * 210.00150 * 16 14 12 19 19 H 1.48506 * 109.46794 * 330.00214 * 16 14 12 20 20 C 1.53067 * 109.68922 * 17.83089 * 10 5 4 21 21 C 1.53413 * 108.30381 * 311.79742 * 20 10 5 22 22 O 1.35871 * 118.47960 * 180.39974 * 4 3 2 23 23 H 1.09004 * 109.46642 * 269.97923 * 1 2 3 24 24 H 1.08995 * 109.47144 * 29.97622 * 1 2 3 25 25 H 1.08994 * 109.47402 * 149.98033 * 1 2 3 26 26 H 1.07998 * 119.88368 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47164 * 90.40877 * 7 6 5 28 28 H 1.09005 * 109.46615 * 210.40797 * 7 6 5 29 29 H 1.08994 * 109.47027 * 330.40866 * 7 6 5 30 30 H 0.96997 * 119.99542 * 180.02562 * 15 14 12 31 31 H 1.09003 * 109.69456 * 71.49458 * 20 10 5 32 32 H 1.08998 * 109.70024 * 192.09691 * 20 10 5 33 33 H 1.09006 * 109.68095 * 305.00142 * 21 20 10 34 34 H 1.08998 * 109.71734 * 184.46888 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1977 1.1949 0.0000 4 6 3.5886 1.1997 -0.0005 5 6 4.2791 0.0001 -0.0035 6 6 3.5818 -1.1960 -0.0022 7 6 4.3335 -2.5023 -0.0031 8 6 2.1993 -1.1978 -0.0004 9 17 1.3326 -2.7020 0.0006 10 6 5.7862 -0.0387 -0.0093 11 1 6.1393 -0.2654 -1.0153 12 6 6.2641 -1.1052 0.9421 13 1 5.5549 -1.6309 1.5643 14 6 7.6066 -1.4098 1.0183 15 7 8.4702 -0.7693 0.2610 16 14 8.1988 -2.7323 2.1971 17 1 8.1935 -4.0479 1.5084 18 1 9.5782 -2.4140 2.6458 19 1 7.2954 -2.7864 3.3746 20 6 6.3388 1.3194 0.4302 21 6 5.6120 2.4144 -0.3613 22 8 4.2324 2.3962 0.0078 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3634 -0.8897 -0.5141 26 1 1.6562 2.1293 0.0004 27 1 4.5100 -2.8206 1.0242 28 1 3.7456 -3.2593 -0.5222 29 1 5.2883 -2.3716 -0.5122 30 1 9.4147 -0.9840 0.3144 31 1 6.1635 1.4595 1.4969 32 1 7.4081 1.3653 0.2238 33 1 5.7088 2.2207 -1.4296 34 1 6.0428 3.3871 -0.1241 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261107653.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:31 Heat of formation + Delta-G solvation = -46.865705 kcal Electronic energy + Delta-G solvation = -18518.138537 eV Core-core repulsion = 15633.871495 eV Total energy + Delta-G solvation = -2884.267043 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.68024 -39.02398 -37.13488 -36.72981 -34.14993 -32.83011 -31.85971 -29.41269 -27.67891 -27.05145 -24.87975 -23.61365 -21.93357 -20.51032 -18.70349 -18.07364 -17.53916 -17.15195 -16.35950 -15.93957 -15.25543 -15.14178 -14.72176 -14.55784 -14.25407 -14.00982 -13.83045 -13.44650 -13.08387 -12.98363 -12.84435 -12.82570 -12.58070 -12.47135 -12.27227 -12.11937 -11.71708 -11.49320 -11.29336 -10.99265 -10.84482 -10.44456 -9.32816 -8.87835 -8.11731 -6.15892 0.34452 0.39268 1.30650 1.40062 1.43255 1.50903 2.39802 2.45289 2.71709 3.18911 3.87249 3.92303 4.12857 4.20701 4.28929 4.34195 4.51241 4.54575 4.72194 4.75277 4.85804 4.88595 4.98201 5.00495 5.12355 5.15102 5.29766 5.45367 5.49364 5.55456 5.65595 5.79827 5.83652 5.99815 6.29386 6.52663 6.84160 7.45244 8.95761 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018810 B = 0.008448 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.217499 B = 3313.697224 C = 4589.145929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.054 4.054 3 C -0.154 4.154 4 C 0.116 3.884 5 C -0.146 4.146 6 C -0.040 4.040 7 C -0.096 4.096 8 C -0.085 4.085 9 Cl -0.067 7.067 10 C 0.085 3.915 11 H 0.015 0.985 12 C -0.507 4.507 13 H 0.065 0.935 14 C 0.019 3.981 15 N -0.918 5.918 16 Si 0.941 3.059 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.134 4.134 21 C 0.061 3.939 22 O -0.325 6.325 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.156 0.844 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.261 0.739 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.291 2.137 -1.363 12.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.055 4.055 3 C -0.173 4.173 4 C 0.070 3.930 5 C -0.147 4.147 6 C -0.041 4.041 7 C -0.153 4.153 8 C -0.112 4.112 9 Cl -0.038 7.038 10 C 0.067 3.933 11 H 0.033 0.967 12 C -0.545 4.545 13 H 0.083 0.917 14 C -0.180 4.180 15 N -0.558 5.558 16 Si 0.768 3.232 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.173 4.173 21 C -0.013 4.013 22 O -0.239 6.239 23 H 0.103 0.897 24 H 0.108 0.892 25 H 0.094 0.906 26 H 0.173 0.827 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.246 2.192 -1.354 12.514 hybrid contribution 1.227 -0.991 0.552 1.670 sum -11.019 1.201 -0.802 11.113 Atomic orbital electron populations 1.20857 0.87570 1.04269 1.03713 1.19704 0.97994 0.89705 0.98119 1.20507 0.90076 0.98952 1.07745 1.19082 0.92224 0.84500 0.97166 1.20354 0.98028 0.91677 1.04627 1.19645 0.91580 0.96101 0.96791 1.20996 0.99866 0.92317 1.02075 1.20603 0.91156 0.87252 1.12180 1.98280 1.76020 1.32289 1.97198 1.17580 0.85488 0.94098 0.96155 0.96702 1.21461 0.92467 1.18975 1.21636 0.91695 1.25534 0.97008 0.98278 0.97153 1.70000 1.02505 1.42629 1.40623 0.85792 0.77497 0.80136 0.79796 1.19981 1.21217 1.19650 1.22089 1.01530 0.95413 0.98229 1.23189 0.78089 1.01425 0.98597 1.85860 1.26292 1.27766 1.84011 0.89704 0.89229 0.90647 0.82667 0.91541 0.91996 0.90924 0.92996 0.94078 0.90469 0.92349 0.85635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.30 9.62 71.24 0.69 -1.61 16 2 C -0.05 -1.66 5.88 -19.89 -0.12 -1.77 16 3 C -0.15 -5.01 9.59 22.42 0.22 -4.79 16 4 C 0.12 4.56 6.47 22.52 0.15 4.71 16 5 C -0.15 -6.40 5.42 -19.75 -0.11 -6.51 16 6 C -0.04 -1.65 5.62 -19.81 -0.11 -1.76 16 7 C -0.10 -3.92 7.67 71.24 0.55 -3.37 16 8 C -0.09 -2.96 6.31 22.30 0.14 -2.82 16 9 Cl -0.07 -1.97 25.63 -2.72 -0.07 -2.04 16 10 C 0.08 4.15 1.62 -12.24 -0.02 4.13 16 11 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 12 C -0.51 -26.33 5.59 25.60 0.14 -26.19 16 13 H 0.07 3.37 5.10 -2.91 -0.01 3.36 16 14 C 0.02 1.00 5.33 84.65 0.45 1.45 16 15 N -0.92 -50.48 11.90 21.45 0.26 -50.23 16 16 Si 0.94 42.33 29.54 68.60 2.03 44.36 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 20 C -0.13 -6.09 5.17 30.76 0.16 -5.93 16 21 C 0.06 2.24 7.03 72.12 0.51 2.75 16 22 O -0.32 -12.40 10.27 -92.10 -0.95 -13.34 16 23 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.09 1.52 8.08 -2.39 -0.02 1.50 16 25 H 0.07 1.55 6.91 -2.39 -0.02 1.54 16 26 H 0.16 4.09 8.06 -2.91 -0.02 4.07 16 27 H 0.07 2.76 6.59 -2.39 -0.02 2.75 16 28 H 0.06 2.20 6.90 -2.38 -0.02 2.18 16 29 H 0.07 3.33 5.92 -2.39 -0.01 3.32 16 30 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 31 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 32 H 0.08 3.77 6.88 -2.39 -0.02 3.75 16 33 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.13 3.71 8.14 -2.39 -0.02 3.69 16 Total: -1.00 -57.19 283.38 5.02 -52.18 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 1.12 Total: 10.79 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 2.64 Total: -41.71 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.26 Total: -50.23 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.95 Total: -13.34 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -0.07 Total: -2.04 kcal Total: -57.19 5.02 -52.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107653.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.310 kcal (2) G-P(sol) polarization free energy of solvation -57.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds