Wall clock time and date at job start Mon Mar 30 2020 06:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38047 * 119.77191 * 2 1 4 4 C 1.38256 * 120.02080 * 179.97438 * 3 2 1 5 5 C 1.38081 * 119.83459 * 0.12713 * 4 3 2 6 6 Cl 1.73600 * 119.89615 * 180.02562 * 5 4 3 7 7 C 1.39264 * 120.20841 * 359.97438 * 5 4 3 8 8 C 1.38115 * 119.87873 * 359.75741 * 7 5 4 9 9 C 1.50665 * 122.25273 * 180.42873 * 8 7 5 10 10 H 1.09004 * 109.20899 * 268.96988 * 9 8 7 11 11 C 1.50705 * 109.21182 * 149.65365 * 9 8 7 12 12 H 1.07991 * 119.99777 * 323.19056 * 11 9 8 13 13 C 1.37876 * 119.99919 * 143.19080 * 11 9 8 14 14 N 1.31512 * 119.99957 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 119.99852 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47281 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47291 * 120.00319 * 15 13 11 18 18 H 1.48501 * 109.47300 * 240.00044 * 15 13 11 19 19 C 1.52835 * 110.81341 * 29.30986 * 9 8 7 20 20 C 1.53472 * 108.86186 * 269.81487 * 19 9 8 21 21 C 1.53304 * 108.11746 * 58.66284 * 20 19 9 22 22 O 1.35695 * 118.25921 * 179.55716 * 7 5 4 23 23 H 1.08995 * 109.47431 * 263.45003 * 1 2 3 24 24 H 1.09006 * 109.47088 * 23.45435 * 1 2 3 25 25 H 1.09010 * 109.46671 * 143.44670 * 1 2 3 26 26 H 1.08006 * 119.99001 * 359.93607 * 3 2 1 27 27 H 1.07995 * 120.07959 * 180.14997 * 4 3 2 28 28 H 0.97008 * 120.00022 * 180.02562 * 14 13 11 29 29 H 1.08996 * 109.57446 * 150.00162 * 19 9 8 30 30 H 1.08999 * 109.67362 * 29.68693 * 19 9 8 31 31 H 1.09000 * 109.73510 * 299.00700 * 20 19 9 32 32 H 1.09001 * 109.73462 * 178.31686 * 20 19 9 33 33 H 1.09006 * 109.76838 * 151.78200 * 21 20 19 34 34 H 1.08996 * 109.77005 * 272.52117 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1925 1.1983 0.0000 4 6 3.5751 1.2043 0.0005 5 6 4.2672 0.0095 -0.0016 6 17 6.0032 0.0151 -0.0002 7 6 3.5771 -1.2001 -0.0037 8 6 2.1959 -1.2043 0.0013 9 6 1.3957 -2.4808 0.0089 10 1 1.1858 -2.7786 -1.0185 11 6 0.0944 -2.2461 0.7318 12 1 0.0657 -1.5982 1.5953 13 6 -1.0594 -2.8587 0.2908 14 7 -1.0242 -3.6482 -0.7604 15 14 -2.6722 -2.5683 1.1873 16 1 -2.4446 -1.6480 2.3303 17 1 -3.6561 -1.9644 0.2532 18 1 -3.1982 -3.8623 1.6916 19 6 2.1654 -3.6001 0.7095 20 6 3.0094 -4.3485 -0.3311 21 6 3.9577 -3.3403 -0.9902 22 8 4.2968 -2.3505 -0.0150 23 1 -0.3634 -0.1172 1.0209 24 1 -0.3633 0.9428 -0.4091 25 1 -0.3633 -0.8256 -0.6121 26 1 1.6486 2.1314 -0.0010 27 1 4.1123 2.1411 0.0030 28 1 -1.8361 -4.0789 -1.0709 29 1 1.4623 -4.2910 1.1747 30 1 2.8183 -3.1750 1.4718 31 1 2.3578 -4.7887 -1.0859 32 1 3.5878 -5.1319 0.1587 33 1 4.8604 -3.8495 -1.3279 34 1 3.4619 -2.8677 -1.8381 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261244494.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:45 Heat of formation + Delta-G solvation = -30.269095 kcal Electronic energy + Delta-G solvation = -18816.608168 eV Core-core repulsion = 15933.060809 eV Total energy + Delta-G solvation = -2883.547360 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.62241 -38.72136 -37.63274 -36.51428 -33.97483 -32.91270 -32.14186 -28.86791 -27.86889 -26.82947 -24.67012 -22.29464 -22.01175 -21.27475 -18.70773 -18.05318 -17.45948 -16.97275 -16.45152 -16.39451 -15.40684 -14.93312 -14.72824 -14.46665 -14.40826 -13.81631 -13.71672 -13.45936 -13.02314 -12.89453 -12.57322 -12.45858 -12.33206 -12.15555 -12.11344 -11.90184 -11.76323 -11.44522 -11.17484 -10.88354 -10.81448 -10.35775 -9.21209 -9.10585 -8.08745 -6.01773 0.29765 0.44234 1.28587 1.40016 1.45926 1.53621 2.44138 2.49079 2.89784 3.20666 3.96502 4.10791 4.13641 4.18173 4.32547 4.39479 4.44896 4.52238 4.76402 4.82535 4.93520 4.98231 5.09496 5.17996 5.23409 5.28559 5.35469 5.46067 5.54196 5.65887 5.78395 5.85162 5.95458 6.14750 6.37251 6.58915 6.92481 7.46895 8.99977 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.024914 B = 0.007783 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.618856 B = 3596.551468 C = 4489.088059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.054 4.054 3 C -0.134 4.134 4 C -0.097 4.097 5 C -0.079 4.079 6 Cl -0.066 7.066 7 C 0.099 3.901 8 C -0.115 4.115 9 C 0.071 3.929 10 H 0.043 0.957 11 C -0.492 4.492 12 H 0.058 0.942 13 C 0.021 3.979 14 N -0.922 5.922 15 Si 0.933 3.067 16 H -0.264 1.264 17 H -0.279 1.279 18 H -0.289 1.289 19 C -0.094 4.094 20 C -0.141 4.141 21 C 0.070 3.930 22 O -0.326 6.326 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.156 0.844 27 H 0.161 0.839 28 H 0.260 0.740 29 H 0.037 0.963 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.176 6.588 -0.597 10.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.054 4.054 3 C -0.152 4.152 4 C -0.116 4.116 5 C -0.106 4.106 6 Cl -0.038 7.038 7 C 0.054 3.946 8 C -0.116 4.116 9 C 0.052 3.948 10 H 0.060 0.940 11 C -0.530 4.530 12 H 0.076 0.924 13 C -0.177 4.177 14 N -0.562 5.562 15 Si 0.759 3.241 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.215 1.215 19 C -0.132 4.132 20 C -0.178 4.178 21 C -0.004 4.004 22 O -0.242 6.242 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.173 0.827 27 H 0.179 0.821 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.139 0.861 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.361 6.422 -0.586 10.559 hybrid contribution -1.141 -0.434 0.294 1.256 sum 7.220 5.987 -0.292 9.384 Atomic orbital electron populations 1.21180 0.90517 1.00700 1.02725 1.20200 0.97426 0.91943 0.95873 1.21219 0.93447 0.98084 1.02492 1.21057 0.94070 0.96377 1.00071 1.20982 0.84721 0.93599 1.11332 1.98304 1.09328 1.98909 1.97214 1.18477 0.89267 0.85554 1.01310 1.20841 0.91652 0.98483 1.00657 1.17831 0.92076 0.87578 0.97279 0.93957 1.21193 0.92584 1.26983 1.12240 0.92416 1.25383 1.01206 0.95602 0.95540 1.70007 1.28839 1.31831 1.25520 0.85869 0.81084 0.77841 0.79259 1.18807 1.20432 1.21508 1.21628 0.96423 0.97653 0.97512 1.22300 0.97943 0.98310 0.99284 1.23092 1.00058 0.88055 0.89233 1.85887 1.57237 1.25503 1.55575 0.91614 0.93081 0.90596 0.82653 0.82150 0.93045 0.94365 0.94032 0.91895 0.90667 0.86066 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.77 7.94 71.24 0.57 -3.20 16 2 C -0.05 -2.11 5.73 -19.79 -0.11 -2.22 16 3 C -0.13 -4.18 9.65 22.23 0.21 -3.96 16 4 C -0.10 -2.86 9.82 22.24 0.22 -2.64 16 5 C -0.08 -2.70 6.34 22.48 0.14 -2.56 16 6 Cl -0.07 -1.98 28.39 -2.72 -0.08 -2.06 16 7 C 0.10 3.89 5.62 22.49 0.13 4.02 16 8 C -0.12 -4.94 5.28 -19.79 -0.10 -5.04 16 9 C 0.07 3.36 1.63 -12.35 -0.02 3.34 16 10 H 0.04 2.27 6.88 -2.38 -0.02 2.25 16 11 C -0.49 -24.68 4.15 25.60 0.11 -24.58 16 12 H 0.06 2.92 5.98 -2.92 -0.02 2.91 16 13 C 0.02 1.07 4.54 84.65 0.38 1.45 16 14 N -0.92 -50.37 12.76 21.45 0.27 -50.09 16 15 Si 0.93 41.11 29.54 68.60 2.03 43.13 16 16 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 17 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 19 C -0.09 -4.19 5.11 30.70 0.16 -4.03 16 20 C -0.14 -5.20 6.04 30.85 0.19 -5.01 16 21 C 0.07 2.36 6.52 72.08 0.47 2.83 16 22 O -0.33 -12.38 8.21 -90.15 -0.74 -13.12 16 23 H 0.07 2.69 6.14 -2.39 -0.01 2.67 16 24 H 0.05 1.67 8.03 -2.38 -0.02 1.65 16 25 H 0.08 3.53 5.24 -2.38 -0.01 3.52 16 26 H 0.16 3.75 8.05 -2.91 -0.02 3.73 16 27 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 28 H 0.26 13.68 8.31 -92.70 -0.77 12.91 16 29 H 0.04 1.84 7.82 -2.39 -0.02 1.82 16 30 H 0.04 1.86 6.81 -2.39 -0.02 1.84 16 31 H 0.06 2.45 8.11 -2.39 -0.02 2.43 16 32 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.12 3.19 8.14 -2.38 -0.02 3.17 16 34 H 0.05 1.74 7.77 -2.39 -0.02 1.72 16 Total: -1.00 -56.13 282.08 4.93 -51.20 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 1.11 Total: 12.54 kcal Atomic # 6 Polarization: -43.94 SS G_CDS: 2.33 Total: -41.61 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.27 Total: -50.09 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.74 Total: -13.12 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.13 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -0.08 Total: -2.06 kcal Total: -56.13 4.93 -51.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244494.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.935 kcal (2) G-P(sol) polarization free energy of solvation -56.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds