Wall clock time and date at job start Mon Mar 30 2020 06:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38208 * 120.15859 * 2 1 4 4 C 1.38344 * 120.21693 * 179.90333 * 3 2 1 5 5 Cl 1.73595 * 119.97994 * 180.47518 * 4 3 2 6 6 C 1.38532 * 120.04438 * 0.45041 * 4 3 2 7 7 C 1.37986 * 119.63236 * 0.08171 * 6 4 3 8 8 C 1.37979 * 120.53948 * 358.99963 * 7 6 4 9 9 O 1.36183 * 120.32844 * 181.55608 * 8 7 6 10 10 C 1.43132 * 115.61349 * 70.23317 * 9 8 7 11 11 C 1.51428 * 110.95156 * 273.21553 * 10 9 8 12 12 C 1.52142 * 113.45391 * 65.49108 * 11 10 9 13 13 C 1.51655 * 119.98222 * 177.74863 * 7 6 4 14 14 H 1.08994 * 109.60078 * 352.68135 * 13 7 6 15 15 C 1.50698 * 109.59735 * 232.20799 * 13 7 6 16 16 H 1.08003 * 120.00234 * 335.11639 * 15 13 7 17 17 C 1.37884 * 119.99961 * 155.10825 * 15 13 7 18 18 N 1.31509 * 119.99606 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 120.00078 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47206 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46989 * 120.00306 * 19 17 15 22 22 H 1.48495 * 109.47169 * 239.99987 * 19 17 15 23 23 H 1.08994 * 109.47074 * 270.02740 * 1 2 3 24 24 H 1.08997 * 109.46481 * 30.02103 * 1 2 3 25 25 H 1.08997 * 109.46888 * 150.01995 * 1 2 3 26 26 H 1.08009 * 119.89423 * 359.92797 * 3 2 1 27 27 H 1.08008 * 120.18452 * 180.08196 * 6 4 3 28 28 H 1.09005 * 109.18139 * 33.59478 * 10 9 8 29 29 H 1.08997 * 109.18264 * 152.83965 * 10 9 8 30 30 H 1.08996 * 108.68437 * 186.51715 * 11 10 9 31 31 H 1.08996 * 108.68783 * 304.46708 * 11 10 9 32 32 H 1.09002 * 109.20965 * 172.14598 * 12 11 10 33 33 H 1.09001 * 109.17727 * 52.79894 * 12 11 10 34 34 H 0.97003 * 120.00159 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.1950 0.0000 4 6 3.5848 1.1964 0.0020 5 17 4.4507 2.7009 0.0145 6 6 4.2796 -0.0020 -0.0054 7 6 3.5842 -1.1938 -0.0165 8 6 2.2045 -1.2006 0.0005 9 8 1.5229 -2.3794 0.0214 10 6 1.6060 -3.1206 1.2431 11 6 2.8280 -4.0149 1.2518 12 6 4.1409 -3.2461 1.2492 13 6 4.3361 -2.5095 -0.0762 14 1 5.3971 -2.3173 -0.2350 15 6 3.7966 -3.3491 -1.2053 16 1 2.7862 -3.1980 -1.5557 17 6 4.5930 -4.3102 -1.7913 18 7 5.8231 -4.4943 -1.3645 19 14 3.9245 -5.3505 -3.1914 20 1 2.5245 -4.9491 -3.4817 21 1 4.7590 -5.1455 -4.4025 22 1 3.9588 -6.7834 -2.8034 23 1 -0.3633 0.0005 1.0276 24 1 -0.3632 0.8898 -0.5142 25 1 -0.3633 -0.8901 -0.5135 26 1 1.6622 2.1309 -0.0012 27 1 5.3597 -0.0036 -0.0025 28 1 1.6649 -2.4254 2.0805 29 1 0.7120 -3.7348 1.3508 30 1 2.7936 -4.6443 2.1410 31 1 2.7974 -4.6567 0.3715 32 1 4.9653 -3.9439 1.3964 33 1 4.1337 -2.5223 2.0642 34 1 6.3833 -5.1706 -1.7764 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261251947.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:51 Heat of formation + Delta-G solvation = -49.307726 kcal Electronic energy + Delta-G solvation = -18628.260130 eV Core-core repulsion = 15743.887193 eV Total energy + Delta-G solvation = -2884.372937 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.50321 -38.62024 -37.16861 -36.71098 -33.98551 -33.19450 -31.95131 -28.69006 -27.79236 -26.85431 -25.23630 -22.55739 -22.04284 -20.89300 -18.84253 -18.03589 -17.32256 -16.81117 -16.34230 -16.10708 -15.44662 -14.96482 -14.70762 -14.31865 -14.18810 -14.13313 -13.65504 -13.50516 -13.42429 -13.08204 -12.86210 -12.74835 -12.48495 -12.31200 -12.06608 -11.87239 -11.65531 -11.35521 -11.00551 -10.90760 -10.61350 -10.43549 -9.52718 -9.12726 -8.09683 -6.12047 0.18848 0.41468 1.18462 1.37916 1.41595 1.52982 2.42934 2.54398 3.09966 3.24566 3.90014 3.93375 4.18077 4.27531 4.32402 4.41939 4.50917 4.56180 4.65428 4.81020 4.86332 4.91600 4.96191 5.03920 5.21199 5.29735 5.32835 5.44423 5.54804 5.65214 5.67777 5.80097 5.92036 5.93126 6.39252 6.75559 6.98816 7.50604 9.00482 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019309 B = 0.007488 C = 0.006538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.779487 B = 3738.619344 C = 4281.474856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.097 4.097 3 C -0.112 4.112 4 C -0.041 4.041 5 Cl -0.070 7.070 6 C -0.124 4.124 7 C -0.083 4.083 8 C 0.096 3.904 9 O -0.326 6.326 10 C 0.077 3.923 11 C -0.138 4.138 12 C -0.092 4.092 13 C 0.073 3.927 14 H 0.019 0.981 15 C -0.485 4.485 16 H 0.064 0.936 17 C 0.010 3.990 18 N -0.928 5.928 19 Si 0.943 3.057 20 H -0.268 1.268 21 H -0.287 1.287 22 H -0.280 1.280 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.160 0.840 27 H 0.121 0.879 28 H 0.055 0.945 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.591 9.127 5.877 14.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.098 4.098 3 C -0.131 4.131 4 C -0.068 4.068 5 Cl -0.041 7.041 6 C -0.143 4.143 7 C -0.084 4.084 8 C 0.052 3.948 9 O -0.242 6.242 10 C 0.003 3.997 11 C -0.176 4.176 12 C -0.130 4.130 13 C 0.054 3.946 14 H 0.038 0.962 15 C -0.523 4.523 16 H 0.082 0.918 17 C -0.187 4.187 18 N -0.569 5.569 19 Si 0.770 3.230 20 H -0.192 1.192 21 H -0.213 1.213 22 H -0.206 1.206 23 H 0.103 0.897 24 H 0.105 0.895 25 H 0.084 0.916 26 H 0.178 0.822 27 H 0.139 0.861 28 H 0.074 0.926 29 H 0.133 0.867 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.484 9.057 5.702 14.300 hybrid contribution 0.918 -0.768 -0.760 1.418 sum -8.566 8.288 4.942 12.903 Atomic orbital electron populations 1.20659 0.87913 1.03597 1.03411 1.20313 0.98325 0.90563 1.00558 1.20905 0.91114 0.98743 1.02328 1.20914 0.92888 0.86342 1.06648 1.98325 1.77141 1.31591 1.97087 1.20870 1.00076 0.90450 1.02938 1.20898 0.94512 0.96542 0.96447 1.18519 0.89310 0.86308 1.00676 1.86230 1.69466 1.31227 1.37305 1.22523 0.98848 0.93871 0.84487 1.21515 0.94634 0.99381 1.02023 1.21199 0.97096 0.97979 0.96694 1.18040 0.94248 0.88178 0.94134 0.96223 1.21367 0.98940 1.16221 1.15749 0.91784 1.25631 0.95077 0.98919 0.99060 1.70061 1.08409 1.34857 1.43576 0.85716 0.78665 0.78876 0.79761 1.19239 1.21326 1.20609 0.89672 0.89509 0.91611 0.82211 0.86059 0.92647 0.86706 0.91050 0.92059 0.94645 0.94469 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.29 9.79 71.24 0.70 -1.59 16 2 C -0.10 -3.01 5.90 -19.72 -0.12 -3.13 16 3 C -0.11 -3.24 9.48 22.29 0.21 -3.02 16 4 C -0.04 -1.35 6.32 22.37 0.14 -1.21 16 5 Cl -0.07 -1.96 28.95 -2.72 -0.08 -2.04 16 6 C -0.12 -4.85 9.48 22.28 0.21 -4.64 16 7 C -0.08 -3.58 4.64 -19.68 -0.09 -3.67 16 8 C 0.10 3.71 5.21 22.36 0.12 3.82 16 9 O -0.33 -12.67 7.21 -95.63 -0.69 -13.36 16 10 C 0.08 2.52 6.48 71.47 0.46 2.98 16 11 C -0.14 -5.32 5.29 29.80 0.16 -5.16 16 12 C -0.09 -4.06 5.44 30.27 0.16 -3.89 16 13 C 0.07 3.61 2.38 -12.02 -0.03 3.58 16 14 H 0.02 1.10 7.40 -2.39 -0.02 1.08 16 15 C -0.48 -26.08 5.56 25.60 0.14 -25.94 16 16 H 0.06 3.53 6.02 -2.91 -0.02 3.51 16 17 C 0.01 0.58 5.46 84.66 0.46 1.04 16 18 N -0.93 -54.14 12.96 21.45 0.28 -53.86 16 19 Si 0.94 44.41 29.54 68.60 2.03 46.44 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.09 1.57 8.09 -2.39 -0.02 1.55 16 25 H 0.06 1.66 7.55 -2.39 -0.02 1.64 16 26 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 27 H 0.12 4.76 7.98 -2.91 -0.02 4.74 16 28 H 0.06 1.64 7.90 -2.38 -0.02 1.62 16 29 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.06 2.76 6.51 -2.39 -0.02 2.75 16 32 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.04 1.49 7.90 -2.39 -0.02 1.47 16 34 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -61.35 289.69 5.17 -56.18 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 1.10 Total: 7.46 kcal Atomic # 6 Polarization: -43.35 SS G_CDS: 2.53 Total: -40.82 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.28 Total: -53.86 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.69 Total: -13.36 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.08 Total: -2.04 kcal Total: -61.35 5.17 -56.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251947.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.877 kcal (2) G-P(sol) polarization free energy of solvation -61.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds