Wall clock time and date at job start Mon Mar 30 2020 06:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38065 * 119.77203 * 2 1 4 4 C 1.38245 * 120.01919 * 180.02562 * 3 2 1 5 5 C 1.38083 * 119.84022 * 0.10673 * 4 3 2 6 6 Cl 1.73598 * 119.89456 * 179.97438 * 5 4 3 7 7 C 1.39257 * 120.21221 * 359.97438 * 5 4 3 8 8 C 1.38142 * 119.86717 * 359.77700 * 7 5 4 9 9 C 1.50667 * 122.21636 * 180.64481 * 8 7 5 10 10 C 1.52832 * 110.83314 * 29.27310 * 9 8 7 11 11 H 1.09000 * 109.57242 * 29.60444 * 10 9 8 12 12 C 1.50705 * 109.57714 * 149.85947 * 10 9 8 13 13 H 1.08002 * 119.99714 * 0.02562 * 12 10 9 14 14 C 1.37871 * 120.00383 * 180.02562 * 12 10 9 15 15 N 1.31524 * 119.99399 * 0.02562 * 14 12 10 16 16 Si 1.86791 * 120.00541 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47014 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47376 * 119.99858 * 16 14 12 19 19 H 1.48501 * 109.47548 * 240.00364 * 16 14 12 20 20 C 1.53602 * 108.84247 * 269.78270 * 10 9 8 21 21 C 1.53293 * 108.05722 * 58.67793 * 20 10 9 22 22 O 1.35757 * 118.29806 * 179.75454 * 7 5 4 23 23 H 1.08999 * 109.47143 * 95.92614 * 1 2 3 24 24 H 1.09002 * 109.47037 * 215.93103 * 1 2 3 25 25 H 1.09002 * 109.47185 * 335.92418 * 1 2 3 26 26 H 1.07997 * 119.98620 * 0.02562 * 3 2 1 27 27 H 1.08001 * 120.07768 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.20951 * 149.62710 * 9 8 7 29 29 H 1.09006 * 109.20640 * 268.97591 * 9 8 7 30 30 H 0.97002 * 119.99444 * 179.97438 * 15 14 12 31 31 H 1.08996 * 109.78820 * 299.02326 * 20 10 9 32 32 H 1.09003 * 109.74399 * 178.30113 * 20 10 9 33 33 H 1.09007 * 109.77330 * 272.55438 * 21 20 10 34 34 H 1.08998 * 109.78244 * 151.80847 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1984 0.0000 4 6 3.5750 1.2044 -0.0005 5 6 4.2672 0.0096 -0.0033 6 17 6.0032 0.0154 -0.0046 7 6 3.5772 -1.2000 -0.0050 8 6 2.1958 -1.2041 0.0007 9 6 1.3964 -2.4811 0.0136 10 6 2.1670 -3.5977 0.7172 11 1 2.8209 -3.1680 1.4760 12 6 1.1959 -4.5492 1.3675 13 1 0.1331 -4.3750 1.2866 14 6 1.6642 -5.6420 2.0656 15 7 2.9585 -5.8537 2.1645 16 14 0.4606 -6.8217 2.8710 17 1 -0.9285 -6.3639 2.6139 18 1 0.6459 -8.1816 2.3041 19 1 0.7073 -6.8579 4.3350 20 6 3.0102 -4.3503 -0.3230 21 6 3.9569 -3.3432 -0.9858 22 8 4.2967 -2.3513 -0.0128 23 1 -0.3633 -0.1061 -1.0222 24 1 -0.3633 -0.8321 0.6031 25 1 -0.3634 0.9383 0.4192 26 1 1.6486 2.1314 0.0004 27 1 4.1122 2.1413 -0.0001 28 1 0.4555 -2.3099 0.5366 29 1 1.1863 -2.7829 -1.0126 30 1 3.2880 -6.6223 2.6560 31 1 2.3582 -4.7932 -1.0759 32 1 3.5897 -5.1318 0.1684 33 1 3.4596 -2.8726 -1.8340 34 1 4.8594 -3.8525 -1.3238 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261252461.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:40 Heat of formation + Delta-G solvation = -31.653405 kcal Electronic energy + Delta-G solvation = -18422.285391 eV Core-core repulsion = 15538.678004 eV Total energy + Delta-G solvation = -2883.607388 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.20529 -37.38225 -36.23599 -34.76223 -32.53166 -31.12795 -30.77868 -27.27128 -26.61001 -25.20132 -23.40102 -20.99473 -20.69929 -19.39655 -16.87921 -16.79243 -15.77307 -15.55685 -15.08620 -14.46404 -13.85043 -13.60365 -13.41344 -13.19804 -12.89710 -12.59230 -12.34109 -12.00745 -11.77578 -11.59544 -11.17997 -11.01540 -10.77646 -10.68766 -10.61232 -10.42208 -9.93205 -9.82438 -9.59230 -9.30213 -8.82157 -8.34913 -8.12522 -7.80295 -5.99181 -4.05883 1.42177 1.58722 2.51939 3.28514 3.37036 3.39682 3.73952 4.16499 4.42245 5.00844 5.12437 5.30479 5.37756 5.39578 5.68290 5.73856 5.76273 5.79512 5.97710 6.08105 6.17620 6.20282 6.29617 6.38798 6.44104 6.59758 6.84226 6.86398 6.96623 7.12180 7.34786 7.71391 7.97333 8.00915 8.14611 8.40148 8.97832 9.58513 11.06863 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022662 B = 0.006723 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.259756 B = 4163.707935 C = 4977.518566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.068 4.068 3 C -0.137 4.137 4 C -0.102 4.102 5 C -0.068 4.068 6 Cl -0.071 7.071 7 C 0.142 3.858 8 C -0.105 4.105 9 C -0.078 4.078 10 C 0.051 3.949 11 H 0.042 0.958 12 C -0.515 4.515 13 H 0.056 0.944 14 C 0.062 3.938 15 N -0.884 5.884 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.139 4.139 21 C 0.064 3.936 22 O -0.308 6.308 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.126 0.874 27 H 0.130 0.870 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.259 0.741 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.043 0.957 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.219 11.517 -6.514 13.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.068 4.068 3 C -0.156 4.156 4 C -0.121 4.121 5 C -0.095 4.095 6 Cl -0.043 7.043 7 C 0.095 3.905 8 C -0.106 4.106 9 C -0.115 4.115 10 C 0.033 3.967 11 H 0.060 0.940 12 C -0.553 4.553 13 H 0.074 0.926 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.177 4.177 21 C -0.010 4.010 22 O -0.222 6.222 23 H 0.088 0.912 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.143 0.857 27 H 0.148 0.852 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.061 0.939 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.217 11.319 -6.321 12.966 hybrid contribution -0.505 -0.699 0.367 0.938 sum -0.288 10.620 -5.954 12.178 Atomic orbital electron populations 1.20889 0.91040 1.02965 1.02455 1.19890 0.96347 0.92081 0.98520 1.20765 0.93157 0.97551 1.04107 1.20717 0.94139 0.95906 1.01312 1.20897 0.84510 0.93605 1.10512 1.98327 1.09903 1.98904 1.97124 1.18318 0.89246 0.85503 0.97390 1.20405 0.92204 0.96944 1.01078 1.20939 0.98632 0.91291 1.00630 1.18763 0.93776 0.90849 0.93340 0.94006 1.21230 0.92632 1.08838 1.32634 0.92617 1.24975 0.95036 0.97789 0.96158 1.69919 1.11963 1.28777 1.41601 0.86588 0.81455 0.80999 0.79253 1.19843 1.21081 1.21062 1.22459 0.97925 0.99039 0.98305 1.23239 0.99896 0.88783 0.89055 1.86016 1.56740 1.24484 1.54997 0.91199 0.90233 0.91900 0.85650 0.85220 0.90620 0.92214 0.93056 0.93446 0.88315 0.93872 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 9.43 36.00 0.34 -1.16 16 2 C -0.07 -1.07 5.89 -104.51 -0.62 -1.68 16 3 C -0.14 -1.90 9.65 -39.64 -0.38 -2.28 16 4 C -0.10 -1.48 9.82 -39.64 -0.39 -1.87 16 5 C -0.07 -1.18 6.34 -39.26 -0.25 -1.43 16 6 Cl -0.07 -1.16 28.39 -51.86 -1.47 -2.63 16 7 C 0.14 2.78 5.62 -39.24 -0.22 2.55 16 8 C -0.11 -1.98 5.47 -104.50 -0.57 -2.55 16 9 C -0.08 -1.58 4.34 -27.99 -0.12 -1.70 16 10 C 0.05 1.25 1.78 -91.54 -0.16 1.09 16 11 H 0.04 1.17 6.80 -51.93 -0.35 0.82 16 12 C -0.52 -13.79 8.46 -34.44 -0.29 -14.08 16 13 H 0.06 1.46 7.55 -52.49 -0.40 1.06 16 14 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 15 N -0.88 -25.15 11.41 55.43 0.63 -24.51 16 16 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C -0.14 -3.17 5.09 -26.27 -0.13 -3.30 16 21 C 0.06 1.25 6.52 37.31 0.24 1.50 16 22 O -0.31 -6.55 8.21 -18.98 -0.16 -6.70 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.08 1.10 6.02 -51.93 -0.31 0.79 16 25 H 0.06 0.67 8.04 -51.93 -0.42 0.25 16 26 H 0.13 1.34 8.05 -52.49 -0.42 0.92 16 27 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 28 H 0.08 1.49 5.32 -51.93 -0.28 1.22 16 29 H 0.06 1.14 7.77 -51.93 -0.40 0.74 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.05 1.03 8.11 -51.93 -0.42 0.61 16 32 H 0.10 2.54 6.22 -51.93 -0.32 2.22 16 33 H 0.04 0.76 7.77 -51.93 -0.40 0.36 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 286.88 15.07 4.32 4.32 Total: -1.00 -28.76 286.88 -8.47 -37.23 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -4.13 Total: -0.38 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -2.65 Total: -23.31 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.63 Total: -24.51 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.16 Total: -6.70 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.47 Total: -2.63 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.76 -8.47 -37.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261252461.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.580 kcal (2) G-P(sol) polarization free energy of solvation -28.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds