Wall clock time and date at job start Mon Mar 30 2020 06:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38065 * 119.77203 * 2 1 4 4 C 1.38245 * 120.01919 * 180.02562 * 3 2 1 5 5 C 1.38083 * 119.84022 * 0.10673 * 4 3 2 6 6 Cl 1.73598 * 119.89456 * 179.97438 * 5 4 3 7 7 C 1.39257 * 120.21221 * 359.97438 * 5 4 3 8 8 C 1.38142 * 119.86717 * 359.77700 * 7 5 4 9 9 C 1.50667 * 122.21636 * 180.64481 * 8 7 5 10 10 C 1.52832 * 110.83314 * 29.27310 * 9 8 7 11 11 H 1.09000 * 109.57242 * 29.60444 * 10 9 8 12 12 C 1.50705 * 109.57714 * 149.85947 * 10 9 8 13 13 H 1.08002 * 119.99714 * 0.02562 * 12 10 9 14 14 C 1.37871 * 120.00383 * 180.02562 * 12 10 9 15 15 N 1.31524 * 119.99399 * 0.02562 * 14 12 10 16 16 Si 1.86791 * 120.00541 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47014 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47376 * 119.99858 * 16 14 12 19 19 H 1.48501 * 109.47548 * 240.00364 * 16 14 12 20 20 C 1.53602 * 108.84247 * 269.78270 * 10 9 8 21 21 C 1.53293 * 108.05722 * 58.67793 * 20 10 9 22 22 O 1.35757 * 118.29806 * 179.75454 * 7 5 4 23 23 H 1.08999 * 109.47143 * 95.92614 * 1 2 3 24 24 H 1.09002 * 109.47037 * 215.93103 * 1 2 3 25 25 H 1.09002 * 109.47185 * 335.92418 * 1 2 3 26 26 H 1.07997 * 119.98620 * 0.02562 * 3 2 1 27 27 H 1.08001 * 120.07768 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.20951 * 149.62710 * 9 8 7 29 29 H 1.09006 * 109.20640 * 268.97591 * 9 8 7 30 30 H 0.97002 * 119.99444 * 179.97438 * 15 14 12 31 31 H 1.08996 * 109.78820 * 299.02326 * 20 10 9 32 32 H 1.09003 * 109.74399 * 178.30113 * 20 10 9 33 33 H 1.09007 * 109.77330 * 272.55438 * 21 20 10 34 34 H 1.08998 * 109.78244 * 151.80847 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1984 0.0000 4 6 3.5750 1.2044 -0.0005 5 6 4.2672 0.0096 -0.0033 6 17 6.0032 0.0154 -0.0046 7 6 3.5772 -1.2000 -0.0050 8 6 2.1958 -1.2041 0.0007 9 6 1.3964 -2.4811 0.0136 10 6 2.1670 -3.5977 0.7172 11 1 2.8209 -3.1680 1.4760 12 6 1.1959 -4.5492 1.3675 13 1 0.1331 -4.3750 1.2866 14 6 1.6642 -5.6420 2.0656 15 7 2.9585 -5.8537 2.1645 16 14 0.4606 -6.8217 2.8710 17 1 -0.9285 -6.3639 2.6139 18 1 0.6459 -8.1816 2.3041 19 1 0.7073 -6.8579 4.3350 20 6 3.0102 -4.3503 -0.3230 21 6 3.9569 -3.3432 -0.9858 22 8 4.2967 -2.3513 -0.0128 23 1 -0.3633 -0.1061 -1.0222 24 1 -0.3633 -0.8321 0.6031 25 1 -0.3634 0.9383 0.4192 26 1 1.6486 2.1314 0.0004 27 1 4.1122 2.1413 -0.0001 28 1 0.4555 -2.3099 0.5366 29 1 1.1863 -2.7829 -1.0126 30 1 3.2880 -6.6223 2.6560 31 1 2.3582 -4.7932 -1.0759 32 1 3.5897 -5.1318 0.1684 33 1 3.4596 -2.8726 -1.8340 34 1 4.8594 -3.8525 -1.3238 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261252461.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:39 Heat of formation + Delta-G solvation = -46.499171 kcal Electronic energy + Delta-G solvation = -18422.929152 eV Core-core repulsion = 15538.678004 eV Total energy + Delta-G solvation = -2884.251148 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.60301 -38.76262 -37.52878 -36.48430 -34.15818 -32.69716 -32.20400 -28.98504 -27.80677 -26.80055 -25.14526 -22.32426 -22.06144 -21.16461 -18.65571 -18.19769 -17.30556 -17.04128 -16.69845 -16.23774 -15.19439 -14.89470 -14.80956 -14.80144 -14.29841 -14.02998 -13.76319 -13.44737 -13.28759 -12.98437 -12.78316 -12.62550 -12.44322 -12.13756 -12.02793 -11.88126 -11.72638 -11.55076 -11.20291 -11.02120 -10.73703 -10.38459 -9.41008 -9.15705 -8.07232 -6.21406 0.17882 0.32352 1.25502 1.39919 1.41962 1.52776 2.43236 2.46348 2.80282 3.19837 3.82539 3.93077 4.15630 4.19073 4.25189 4.40170 4.46061 4.52233 4.64045 4.72095 4.78746 4.88739 4.93329 5.06844 5.11299 5.21680 5.29786 5.36544 5.48418 5.63626 5.69927 5.84801 6.00915 6.11815 6.35874 6.62698 6.91554 7.46550 8.97664 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022662 B = 0.006723 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.259756 B = 4163.707935 C = 4977.518566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.069 4.069 3 C -0.124 4.124 4 C -0.092 4.092 5 C -0.084 4.084 6 Cl -0.071 7.071 7 C 0.109 3.891 8 C -0.132 4.132 9 C -0.066 4.066 10 C 0.053 3.947 11 H -0.005 1.005 12 C -0.532 4.532 13 H 0.057 0.943 14 C 0.011 3.989 15 N -0.915 5.915 16 Si 0.953 3.047 17 H -0.263 1.263 18 H -0.281 1.281 19 H -0.285 1.285 20 C -0.133 4.133 21 C 0.071 3.929 22 O -0.332 6.332 23 H 0.085 0.915 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.169 0.831 27 H 0.162 0.838 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.258 0.742 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.664 13.766 -7.206 15.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.069 4.069 3 C -0.142 4.142 4 C -0.110 4.110 5 C -0.111 4.111 6 Cl -0.042 7.042 7 C 0.064 3.936 8 C -0.133 4.133 9 C -0.103 4.103 10 C 0.034 3.966 11 H 0.014 0.986 12 C -0.570 4.570 13 H 0.076 0.924 14 C -0.188 4.188 15 N -0.555 5.555 16 Si 0.779 3.221 17 H -0.187 1.187 18 H -0.206 1.206 19 H -0.212 1.212 20 C -0.172 4.172 21 C -0.003 4.003 22 O -0.248 6.248 23 H 0.104 0.896 24 H 0.082 0.918 25 H 0.110 0.890 26 H 0.187 0.813 27 H 0.180 0.820 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.238 13.580 -7.020 15.337 hybrid contribution -0.053 -1.299 0.593 1.429 sum -1.291 12.282 -6.427 13.922 Atomic orbital electron populations 1.20948 0.88994 1.03889 1.03384 1.20248 0.97903 0.91547 0.97197 1.21247 0.92964 0.98451 1.01557 1.21171 0.94732 0.96010 0.99108 1.21114 0.84823 0.93861 1.11307 1.98320 1.09804 1.98900 1.97168 1.18657 0.89893 0.85582 0.99513 1.20354 0.92074 0.97380 1.03535 1.20679 0.98235 0.90999 1.00351 1.18620 0.93189 0.91836 0.92935 0.98649 1.21655 0.93193 1.09365 1.32757 0.92434 1.25772 0.96565 0.99550 0.96904 1.70084 1.13717 1.29292 1.42400 0.85583 0.79723 0.78872 0.77940 1.18740 1.20639 1.21157 1.22273 0.98073 0.98876 0.97949 1.23152 0.99926 0.88156 0.89048 1.85973 1.57462 1.25511 1.55835 0.89608 0.91837 0.88972 0.81329 0.82007 0.90533 0.91511 0.93254 0.93025 0.91893 0.91866 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 9.43 71.23 0.67 -1.92 16 2 C -0.07 -1.96 5.89 -19.79 -0.12 -2.08 16 3 C -0.12 -2.90 9.65 22.23 0.21 -2.68 16 4 C -0.09 -2.35 9.82 22.23 0.22 -2.13 16 5 C -0.08 -2.79 6.34 22.48 0.14 -2.65 16 6 Cl -0.07 -2.24 28.39 -2.72 -0.08 -2.32 16 7 C 0.11 4.27 5.62 22.49 0.13 4.40 16 8 C -0.13 -4.90 5.47 -19.78 -0.11 -5.01 16 9 C -0.07 -2.69 4.34 29.78 0.13 -2.56 16 10 C 0.05 2.67 1.78 -11.39 -0.02 2.65 16 11 H 0.00 -0.28 6.80 -2.39 -0.02 -0.29 16 12 C -0.53 -29.21 8.46 25.60 0.22 -28.99 16 13 H 0.06 3.05 7.55 -2.91 -0.02 3.03 16 14 C 0.01 0.60 5.31 84.65 0.45 1.05 16 15 N -0.92 -54.13 11.41 21.45 0.24 -53.89 16 16 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 20 C -0.13 -6.32 5.09 30.89 0.16 -6.16 16 21 C 0.07 2.83 6.52 72.08 0.47 3.30 16 22 O -0.33 -14.56 8.21 -90.83 -0.75 -15.31 16 23 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.06 1.64 6.02 -2.39 -0.01 1.63 16 25 H 0.09 1.52 8.04 -2.39 -0.02 1.50 16 26 H 0.17 2.51 8.05 -2.91 -0.02 2.49 16 27 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 28 H 0.08 3.03 5.32 -2.39 -0.01 3.02 16 29 H 0.07 2.54 7.77 -2.38 -0.02 2.53 16 30 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.05 2.32 8.11 -2.39 -0.02 2.30 16 32 H 0.06 3.42 6.22 -2.39 -0.01 3.41 16 33 H 0.06 2.22 7.77 -2.38 -0.02 2.20 16 34 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 Total: -1.00 -64.96 286.88 5.11 -59.85 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 1.11 Total: 8.63 kcal Atomic # 6 Polarization: -45.34 SS G_CDS: 2.55 Total: -42.79 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.24 Total: -53.89 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.75 Total: -15.31 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 17 Polarization: -2.24 SS G_CDS: -0.08 Total: -2.32 kcal Total: -64.96 5.11 -59.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261252461.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.355 kcal (2) G-P(sol) polarization free energy of solvation -64.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds