Wall clock time and date at job start Mon Mar 30 2020 06:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38057 * 119.76918 * 2 1 4 4 C 1.38243 * 120.02294 * 180.24124 * 3 2 1 5 5 C 1.38092 * 119.83890 * 359.93730 * 4 3 2 6 6 Cl 1.73599 * 119.89824 * 179.97438 * 5 4 3 7 7 C 1.39259 * 120.20490 * 359.96913 * 5 4 3 8 8 C 1.38148 * 119.87563 * 0.21533 * 7 5 4 9 9 C 1.50665 * 122.22255 * 179.40376 * 8 7 5 10 10 C 1.52826 * 110.82676 * 330.70947 * 9 8 7 11 11 H 1.08993 * 109.68389 * 330.34398 * 10 9 8 12 12 C 1.50697 * 109.57507 * 210.01936 * 10 9 8 13 13 H 1.08004 * 120.00450 * 0.64848 * 12 10 9 14 14 C 1.37887 * 120.00155 * 180.65289 * 12 10 9 15 15 N 1.31518 * 120.00166 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99838 * 359.97438 * 14 12 10 17 17 H 1.48504 * 109.47223 * 89.99959 * 16 14 12 18 18 H 1.48491 * 109.47082 * 210.00263 * 16 14 12 19 19 H 1.48501 * 109.47088 * 330.00111 * 16 14 12 20 20 C 1.53469 * 108.83571 * 90.21641 * 10 9 8 21 21 C 1.53301 * 108.12149 * 301.33634 * 20 10 9 22 22 O 1.35760 * 118.30627 * 180.28591 * 7 5 4 23 23 H 1.08995 * 109.47722 * 263.79932 * 1 2 3 24 24 H 1.09001 * 109.47178 * 23.80621 * 1 2 3 25 25 H 1.09009 * 109.46925 * 143.79954 * 1 2 3 26 26 H 1.08000 * 119.98846 * 0.26345 * 3 2 1 27 27 H 1.08000 * 120.08157 * 179.89369 * 4 3 2 28 28 H 1.08992 * 109.20641 * 91.06033 * 9 8 7 29 29 H 1.09001 * 109.20387 * 210.36699 * 9 8 7 30 30 H 0.96996 * 119.99350 * 180.02562 * 15 14 12 31 31 H 1.09005 * 109.73423 * 181.68300 * 20 10 9 32 32 H 1.09000 * 109.73509 * 60.99417 * 20 10 9 33 33 H 1.09010 * 109.77570 * 208.21779 * 21 20 10 34 34 H 1.09000 * 109.82354 * 87.44656 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1984 0.0000 4 6 3.5749 1.2045 -0.0050 5 6 4.2673 0.0097 -0.0088 6 17 6.0032 0.0156 -0.0158 7 6 3.5773 -1.1999 -0.0068 8 6 2.1958 -1.2041 -0.0056 9 6 1.3963 -2.4811 -0.0167 10 6 2.1632 -3.5962 -0.7266 11 1 2.8131 -3.1669 -1.4891 12 6 1.1888 -4.5480 -1.3712 13 1 0.1266 -4.3692 -1.2922 14 6 1.6533 -5.6474 -2.0617 15 7 0.8029 -6.4779 -2.6247 16 14 3.4904 -5.9565 -2.1989 17 1 3.9379 -6.7947 -1.0576 18 1 3.7800 -6.6607 -3.4737 19 1 4.2137 -4.6598 -2.1742 20 6 3.0112 -4.3499 0.3069 21 6 3.9617 -3.3452 0.9679 22 8 4.2965 -2.3513 -0.0046 23 1 -0.3634 -0.1110 1.0216 24 1 -0.3633 0.9402 -0.4148 25 1 -0.3633 -0.8294 -0.6070 26 1 1.6485 2.1314 0.0043 27 1 4.1121 2.1414 -0.0068 28 1 1.1908 -2.7844 1.0098 29 1 0.4528 -2.3089 -0.5347 30 1 1.1297 -7.2514 -3.1101 31 1 3.5880 -5.1306 -0.1892 32 1 2.3624 -4.7943 1.0617 33 1 4.8658 -3.8559 1.2996 34 1 3.4696 -2.8762 1.8200 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261252465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:43 Heat of formation + Delta-G solvation = -23.836113 kcal Electronic energy + Delta-G solvation = -18535.046614 eV Core-core repulsion = 15651.778210 eV Total energy + Delta-G solvation = -2883.268405 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.42560 -37.62093 -36.38181 -34.99781 -32.56054 -31.48258 -31.08296 -27.55753 -26.79358 -25.58771 -23.21898 -21.14940 -20.96674 -19.58949 -17.09317 -17.04738 -16.11703 -15.75267 -15.31493 -14.63580 -13.94985 -13.77809 -13.61049 -13.30700 -13.09650 -12.64129 -12.58415 -12.45833 -11.96872 -11.76657 -11.33264 -11.20734 -11.03064 -10.84497 -10.69994 -10.17527 -10.08285 -9.97860 -9.74393 -9.30924 -9.02563 -8.55103 -8.25844 -8.00016 -6.08984 -4.08370 1.29074 1.43902 2.37947 3.27267 3.41481 3.49698 3.57019 3.96285 4.42660 4.89587 4.99363 5.21676 5.24404 5.28135 5.40397 5.55680 5.64009 5.68023 5.74478 5.80836 5.90355 6.05600 6.08537 6.21687 6.27756 6.38714 6.50780 6.57774 6.70469 6.86285 6.91068 7.17182 7.51579 7.73945 7.82253 8.47870 8.93335 9.53934 11.03734 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.020859 B = 0.007942 C = 0.006277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.996867 B = 3524.810685 C = 4459.362248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.064 4.064 3 C -0.133 4.133 4 C -0.100 4.100 5 C -0.066 4.066 6 Cl -0.071 7.071 7 C 0.135 3.865 8 C -0.106 4.106 9 C -0.068 4.068 10 C 0.017 3.983 11 H 0.042 0.958 12 C -0.514 4.514 13 H 0.074 0.926 14 C 0.071 3.929 15 N -0.901 5.901 16 Si 0.878 3.122 17 H -0.280 1.280 18 H -0.298 1.298 19 H -0.256 1.256 20 C -0.152 4.152 21 C 0.062 3.938 22 O -0.312 6.312 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.128 0.872 27 H 0.132 0.868 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.264 0.736 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.397 13.798 8.014 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.065 4.065 3 C -0.152 4.152 4 C -0.119 4.119 5 C -0.093 4.093 6 Cl -0.042 7.042 7 C 0.089 3.911 8 C -0.107 4.107 9 C -0.105 4.105 10 C -0.002 4.002 11 H 0.060 0.940 12 C -0.552 4.552 13 H 0.092 0.908 14 C -0.130 4.130 15 N -0.539 5.539 16 Si 0.708 3.292 17 H -0.207 1.207 18 H -0.225 1.225 19 H -0.180 1.180 20 C -0.190 4.190 21 C -0.012 4.012 22 O -0.227 6.227 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.146 0.854 27 H 0.149 0.851 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.680 13.573 7.786 16.332 hybrid contribution 1.058 -0.403 -0.030 1.133 sum 5.738 13.169 7.755 16.325 Atomic orbital electron populations 1.20917 0.90778 1.03204 1.02650 1.19903 0.96510 0.91952 0.98108 1.20810 0.93142 0.97674 1.03554 1.20747 0.94171 0.95935 1.01071 1.20884 0.84546 0.93564 1.10317 1.98332 1.09832 1.98903 1.97111 1.18292 0.89241 0.85257 0.98297 1.20391 0.92050 0.97048 1.01197 1.20724 0.98634 0.90329 1.00796 1.19233 0.94615 0.92832 0.93541 0.94010 1.21049 0.93936 1.07501 1.32684 0.90759 1.24997 0.97493 0.95770 0.94767 1.69896 1.34291 1.14245 1.35420 0.86951 0.86667 0.79199 0.76356 1.20670 1.22525 1.18004 1.22832 0.97878 0.97950 1.00330 1.23186 0.99761 0.88671 0.89596 1.86001 1.57203 1.24645 1.54855 0.91028 0.91743 0.90025 0.85431 0.85061 0.91622 0.89768 0.92666 0.92587 0.90893 0.89481 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 9.42 36.01 0.34 -1.11 16 2 C -0.06 -0.94 5.89 -104.51 -0.62 -1.56 16 3 C -0.13 -1.71 9.65 -39.65 -0.38 -2.09 16 4 C -0.10 -1.35 9.82 -39.63 -0.39 -1.74 16 5 C -0.07 -1.06 6.34 -39.26 -0.25 -1.31 16 6 Cl -0.07 -1.07 28.39 -51.86 -1.47 -2.54 16 7 C 0.14 2.46 5.62 -39.24 -0.22 2.24 16 8 C -0.11 -1.86 5.47 -104.49 -0.57 -2.43 16 9 C -0.07 -1.30 4.34 -27.99 -0.12 -1.43 16 10 C 0.02 0.38 1.37 -91.62 -0.13 0.26 16 11 H 0.04 1.06 5.89 -51.93 -0.31 0.75 16 12 C -0.51 -14.07 9.05 -34.44 -0.31 -14.38 16 13 H 0.07 2.17 7.79 -52.48 -0.41 1.76 16 14 C 0.07 2.05 5.45 -17.81 -0.10 1.95 16 15 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 16 Si 0.88 22.15 24.36 -169.99 -4.14 18.01 16 17 H -0.28 -6.78 6.88 56.52 0.39 -6.39 16 18 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 19 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 20 C -0.15 -3.17 4.77 -26.33 -0.13 -3.29 16 21 C 0.06 1.09 6.52 37.31 0.24 1.34 16 22 O -0.31 -6.12 8.21 -18.99 -0.16 -6.28 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.65 8.03 -51.93 -0.42 0.23 16 25 H 0.08 1.09 6.03 -51.92 -0.31 0.78 16 26 H 0.13 1.25 8.05 -52.49 -0.42 0.83 16 27 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 28 H 0.07 1.17 7.77 -51.93 -0.40 0.76 16 29 H 0.08 1.61 5.32 -51.93 -0.28 1.33 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.06 1.26 3.36 -51.93 -0.17 1.08 16 32 H 0.07 1.44 8.11 -51.93 -0.42 1.01 16 33 H 0.09 1.34 8.14 -51.92 -0.42 0.92 16 34 H 0.06 0.88 7.77 -51.93 -0.40 0.48 16 LS Contribution 279.93 15.07 4.22 4.22 Total: -1.00 -30.45 279.93 -7.40 -37.85 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -3.99 Total: -1.11 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -2.63 Total: -23.56 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 0.77 Total: -26.59 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.16 Total: -6.28 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.14 Total: 18.01 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.47 Total: -2.54 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.45 -7.40 -37.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261252465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.013 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds