Wall clock time and date at job start Mon Mar 30 2020 06:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38057 * 119.76918 * 2 1 4 4 C 1.38243 * 120.02294 * 180.24124 * 3 2 1 5 5 C 1.38092 * 119.83890 * 359.93730 * 4 3 2 6 6 Cl 1.73599 * 119.89824 * 179.97438 * 5 4 3 7 7 C 1.39259 * 120.20490 * 359.96913 * 5 4 3 8 8 C 1.38148 * 119.87563 * 0.21533 * 7 5 4 9 9 C 1.50665 * 122.22255 * 179.40376 * 8 7 5 10 10 C 1.52826 * 110.82676 * 330.70947 * 9 8 7 11 11 H 1.08993 * 109.68389 * 330.34398 * 10 9 8 12 12 C 1.50697 * 109.57507 * 210.01936 * 10 9 8 13 13 H 1.08004 * 120.00450 * 0.64848 * 12 10 9 14 14 C 1.37887 * 120.00155 * 180.65289 * 12 10 9 15 15 N 1.31518 * 120.00166 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99838 * 359.97438 * 14 12 10 17 17 H 1.48504 * 109.47223 * 89.99959 * 16 14 12 18 18 H 1.48491 * 109.47082 * 210.00263 * 16 14 12 19 19 H 1.48501 * 109.47088 * 330.00111 * 16 14 12 20 20 C 1.53469 * 108.83571 * 90.21641 * 10 9 8 21 21 C 1.53301 * 108.12149 * 301.33634 * 20 10 9 22 22 O 1.35760 * 118.30627 * 180.28591 * 7 5 4 23 23 H 1.08995 * 109.47722 * 263.79932 * 1 2 3 24 24 H 1.09001 * 109.47178 * 23.80621 * 1 2 3 25 25 H 1.09009 * 109.46925 * 143.79954 * 1 2 3 26 26 H 1.08000 * 119.98846 * 0.26345 * 3 2 1 27 27 H 1.08000 * 120.08157 * 179.89369 * 4 3 2 28 28 H 1.08992 * 109.20641 * 91.06033 * 9 8 7 29 29 H 1.09001 * 109.20387 * 210.36699 * 9 8 7 30 30 H 0.96996 * 119.99350 * 180.02562 * 15 14 12 31 31 H 1.09005 * 109.73423 * 181.68300 * 20 10 9 32 32 H 1.09000 * 109.73509 * 60.99417 * 20 10 9 33 33 H 1.09010 * 109.77570 * 208.21779 * 21 20 10 34 34 H 1.09000 * 109.82354 * 87.44656 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1984 0.0000 4 6 3.5749 1.2045 -0.0050 5 6 4.2673 0.0097 -0.0088 6 17 6.0032 0.0156 -0.0158 7 6 3.5773 -1.1999 -0.0068 8 6 2.1958 -1.2041 -0.0056 9 6 1.3963 -2.4811 -0.0167 10 6 2.1632 -3.5962 -0.7266 11 1 2.8131 -3.1669 -1.4891 12 6 1.1888 -4.5480 -1.3712 13 1 0.1266 -4.3692 -1.2922 14 6 1.6533 -5.6474 -2.0617 15 7 0.8029 -6.4779 -2.6247 16 14 3.4904 -5.9565 -2.1989 17 1 3.9379 -6.7947 -1.0576 18 1 3.7800 -6.6607 -3.4737 19 1 4.2137 -4.6598 -2.1742 20 6 3.0112 -4.3499 0.3069 21 6 3.9617 -3.3452 0.9679 22 8 4.2965 -2.3513 -0.0046 23 1 -0.3634 -0.1110 1.0216 24 1 -0.3633 0.9402 -0.4148 25 1 -0.3633 -0.8294 -0.6070 26 1 1.6485 2.1314 0.0043 27 1 4.1121 2.1414 -0.0068 28 1 1.1908 -2.7844 1.0098 29 1 0.4528 -2.3089 -0.5347 30 1 1.1297 -7.2514 -3.1101 31 1 3.5880 -5.1306 -0.1892 32 1 2.3624 -4.7943 1.0617 33 1 4.8658 -3.8559 1.2996 34 1 3.4696 -2.8762 1.8200 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261252465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:42 Heat of formation + Delta-G solvation = -41.686074 kcal Electronic energy + Delta-G solvation = -18535.820647 eV Core-core repulsion = 15651.778210 eV Total energy + Delta-G solvation = -2884.042437 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.72246 -38.87728 -37.57649 -36.62268 -34.27734 -33.06370 -32.32996 -29.19405 -27.96098 -27.02549 -24.92017 -22.42822 -22.20041 -21.27857 -18.97424 -18.31274 -17.60965 -17.11385 -16.76577 -16.34549 -15.22488 -15.11551 -14.98722 -14.77094 -14.70665 -14.19580 -13.90973 -13.62567 -13.40832 -13.11300 -12.83163 -12.67495 -12.49545 -12.10769 -12.01821 -11.90251 -11.75120 -11.64682 -11.27992 -11.02136 -10.96894 -10.69140 -9.45290 -9.21552 -8.32430 -6.34129 0.14554 0.27574 1.22338 1.24498 1.34549 1.46957 2.30218 2.39371 2.73354 3.03265 3.75873 3.86927 3.98589 4.08887 4.18555 4.21068 4.31735 4.39892 4.55995 4.59080 4.70539 4.80028 4.88640 4.89507 4.95459 5.09358 5.17882 5.22220 5.28403 5.48828 5.63991 5.66236 5.70509 5.82772 6.27757 6.50732 6.72553 7.31239 8.83757 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.020859 B = 0.007942 C = 0.006277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.996867 B = 3524.810685 C = 4459.362248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.067 4.067 3 C -0.121 4.121 4 C -0.090 4.090 5 C -0.080 4.080 6 Cl -0.068 7.068 7 C 0.108 3.892 8 C -0.130 4.130 9 C -0.059 4.059 10 C 0.019 3.981 11 H 0.017 0.983 12 C -0.513 4.513 13 H 0.042 0.958 14 C 0.018 3.982 15 N -0.946 5.946 16 Si 0.938 3.062 17 H -0.262 1.262 18 H -0.302 1.302 19 H -0.256 1.256 20 C -0.153 4.153 21 C 0.067 3.933 22 O -0.334 6.334 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.061 0.939 26 H 0.168 0.832 27 H 0.163 0.837 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.265 0.735 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.389 16.390 9.364 19.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.067 4.067 3 C -0.139 4.139 4 C -0.109 4.109 5 C -0.108 4.108 6 Cl -0.040 7.040 7 C 0.063 3.937 8 C -0.131 4.131 9 C -0.096 4.096 10 C 0.000 4.000 11 H 0.035 0.965 12 C -0.551 4.551 13 H 0.061 0.939 14 C -0.180 4.180 15 N -0.587 5.587 16 Si 0.766 3.234 17 H -0.188 1.188 18 H -0.230 1.230 19 H -0.181 1.181 20 C -0.190 4.190 21 C -0.007 4.007 22 O -0.249 6.249 23 H 0.105 0.895 24 H 0.110 0.890 25 H 0.079 0.921 26 H 0.186 0.814 27 H 0.180 0.820 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.675 16.179 9.155 19.437 hybrid contribution 0.652 -1.088 -0.455 1.348 sum 6.327 15.091 8.699 18.532 Atomic orbital electron populations 1.20962 0.89247 1.03844 1.03399 1.20211 0.97734 0.91647 0.97105 1.21250 0.93042 0.98419 1.01220 1.21182 0.94637 0.96156 0.98884 1.21084 0.84906 0.93785 1.10979 1.98327 1.09600 1.98897 1.97140 1.18561 0.89617 0.85500 1.00037 1.20269 0.92020 0.97102 1.03727 1.20496 0.98030 0.90381 1.00655 1.19097 0.93813 0.93207 0.93834 0.96466 1.21413 0.93531 1.07948 1.32180 0.93930 1.25744 1.01534 0.95844 0.94834 1.70027 1.36266 1.15237 1.37163 0.85984 0.81780 0.79059 0.76531 1.18776 1.22986 1.18062 1.22732 0.98241 0.98184 0.99865 1.23207 1.00148 0.87877 0.89508 1.85965 1.57732 1.25489 1.55743 0.89549 0.89013 0.92059 0.81427 0.81975 0.90649 0.90651 0.92631 0.94277 0.90214 0.87106 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 9.42 71.24 0.67 -1.90 16 2 C -0.07 -1.77 5.89 -19.79 -0.12 -1.89 16 3 C -0.12 -2.58 9.65 22.23 0.21 -2.37 16 4 C -0.09 -2.07 9.82 22.24 0.22 -1.85 16 5 C -0.08 -2.40 6.34 22.48 0.14 -2.26 16 6 Cl -0.07 -1.94 28.39 -2.72 -0.08 -2.01 16 7 C 0.11 3.79 5.62 22.49 0.13 3.91 16 8 C -0.13 -4.41 5.47 -19.78 -0.11 -4.52 16 9 C -0.06 -2.26 4.34 29.78 0.13 -2.13 16 10 C 0.02 0.90 1.37 -11.44 -0.02 0.89 16 11 H 0.02 0.89 5.89 -2.39 -0.01 0.88 16 12 C -0.51 -29.06 9.05 25.60 0.23 -28.83 16 13 H 0.04 2.61 7.79 -2.91 -0.02 2.59 16 14 C 0.02 1.04 5.45 84.66 0.46 1.50 16 15 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 16 Si 0.94 46.82 24.36 68.60 1.67 48.49 16 17 H -0.26 -12.19 6.88 99.48 0.68 -11.51 16 18 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 19 H -0.26 -12.68 6.54 99.48 0.65 -12.03 16 20 C -0.15 -6.26 4.77 30.85 0.15 -6.12 16 21 C 0.07 2.23 6.52 72.08 0.47 2.70 16 22 O -0.33 -12.74 8.21 -90.86 -0.75 -13.49 16 23 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.09 1.48 8.03 -2.39 -0.02 1.46 16 25 H 0.06 1.60 6.03 -2.38 -0.01 1.58 16 26 H 0.17 2.24 8.05 -2.91 -0.02 2.22 16 27 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 28 H 0.08 2.65 7.77 -2.39 -0.02 2.63 16 29 H 0.08 2.96 5.32 -2.39 -0.01 2.95 16 30 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 31 H 0.04 1.72 3.36 -2.38 -0.01 1.71 16 32 H 0.08 3.09 8.11 -2.39 -0.02 3.07 16 33 H 0.11 3.14 8.14 -2.38 -0.02 3.13 16 34 H 0.08 2.24 7.77 -2.39 -0.02 2.23 16 Total: -1.00 -68.08 279.93 4.76 -63.32 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 1.04 Total: 5.70 kcal Atomic # 6 Polarization: -45.42 SS G_CDS: 2.57 Total: -42.85 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.30 Total: -59.16 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.75 Total: -13.49 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.67 Total: 48.49 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.08 Total: -2.01 kcal Total: -68.08 4.76 -63.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261252465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.636 kcal (2) G-P(sol) polarization free energy of solvation -68.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds