Wall clock time and date at job start Mon Mar 30 2020 06:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38014 * 120.02496 * 2 1 4 4 C 1.39095 * 120.23353 * 180.02562 * 3 2 1 5 5 C 1.38413 * 119.71439 * 0.16399 * 4 3 2 6 6 C 1.38461 * 119.84311 * 359.80047 * 5 4 3 7 7 C 1.50702 * 119.84428 * 180.11766 * 6 5 4 8 8 C 1.38249 * 120.30681 * 0.10118 * 6 5 4 9 9 Cl 1.73600 * 120.01912 * 180.02562 * 8 6 5 10 10 C 1.50777 * 121.40248 * 179.76221 * 5 4 3 11 11 C 1.53078 * 109.67717 * 17.72284 * 10 5 4 12 12 H 1.09000 * 109.73079 * 71.50192 * 11 10 5 13 13 C 1.50696 * 109.69747 * 192.08737 * 11 10 5 14 14 H 1.07994 * 120.00437 * 358.83483 * 13 11 10 15 15 C 1.37879 * 119.99749 * 178.83724 * 13 11 10 16 16 N 1.31514 * 120.00117 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 120.00194 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46702 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47201 * 119.99801 * 17 15 13 20 20 H 1.48499 * 109.47096 * 239.99983 * 17 15 13 21 21 C 1.53405 * 108.28999 * 311.78652 * 11 10 5 22 22 O 1.35870 * 118.48703 * 180.21943 * 4 3 2 23 23 H 1.09004 * 109.46815 * 269.96885 * 1 2 3 24 24 H 1.08995 * 109.47405 * 29.96996 * 1 2 3 25 25 H 1.09000 * 109.47368 * 149.97564 * 1 2 3 26 26 H 1.08005 * 119.88351 * 0.05398 * 3 2 1 27 27 H 1.09000 * 109.46965 * 90.00256 * 7 6 5 28 28 H 1.09004 * 109.47289 * 210.00164 * 7 6 5 29 29 H 1.08999 * 109.47209 * 330.00239 * 7 6 5 30 30 H 1.08997 * 109.43671 * 257.66168 * 10 5 4 31 31 H 1.08993 * 109.43426 * 137.78895 * 10 5 4 32 32 H 0.96999 * 120.00132 * 180.02562 * 16 15 13 33 33 H 1.08997 * 109.68497 * 305.04138 * 21 11 10 34 34 H 1.09002 * 109.68505 * 184.48026 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1949 0.0000 4 6 3.5885 1.2000 -0.0005 5 6 4.2790 0.0004 -0.0045 6 6 3.5818 -1.1959 -0.0037 7 6 4.3335 -2.5020 -0.0054 8 6 2.1993 -1.1977 -0.0011 9 17 1.3327 -2.7019 0.0005 10 6 5.7862 -0.0385 -0.0106 11 6 6.3387 1.3202 0.4274 12 1 6.1640 1.4621 1.4939 13 6 7.8170 1.3834 0.1419 14 1 8.3204 0.5315 -0.2906 15 6 8.5270 2.5289 0.4331 16 7 7.9140 3.5666 0.9594 17 14 10.3594 2.6076 0.0786 18 1 10.8054 1.3190 -0.5095 19 1 10.6315 3.7098 -0.8786 20 1 11.0978 2.8562 1.3428 21 6 5.6117 2.4138 -0.3656 22 8 4.2322 2.3965 0.0041 23 1 -0.3633 -0.0006 1.0277 24 1 -0.3634 0.8902 -0.5133 25 1 -0.3634 -0.8898 -0.5142 26 1 1.6560 2.1294 0.0009 27 1 4.5164 -2.8173 1.0219 28 1 3.7426 -3.2608 -0.5185 29 1 5.2853 -2.3728 -0.5207 30 1 6.1391 -0.2664 -1.0163 31 1 6.1318 -0.8096 0.6778 32 1 8.4133 4.3726 1.1639 33 1 5.7079 2.2184 -1.4336 34 1 6.0428 3.3867 -0.1296 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261263226.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:25 Heat of formation + Delta-G solvation = -59.299268 kcal Electronic energy + Delta-G solvation = -18048.879942 eV Core-core repulsion = 15164.073740 eV Total energy + Delta-G solvation = -2884.806202 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.67567 -39.09959 -37.14685 -36.38358 -34.96430 -32.80782 -31.86985 -28.85921 -28.10912 -26.76694 -25.59934 -23.63590 -21.94798 -20.52451 -18.72768 -18.03794 -17.72775 -16.97505 -16.46568 -15.96961 -15.32288 -15.06590 -14.75694 -14.63790 -14.31724 -14.09367 -13.86634 -13.78283 -13.41776 -12.92971 -12.90195 -12.88531 -12.72542 -12.58262 -12.31211 -12.14214 -11.79632 -11.59530 -11.31729 -11.24216 -10.83536 -10.55610 -9.49032 -8.93408 -8.21077 -6.35951 0.23304 0.26520 1.22221 1.41393 1.43978 1.55382 2.37452 2.48069 2.65942 3.09423 3.72508 3.75786 4.01281 4.12916 4.29635 4.36764 4.49879 4.55704 4.61866 4.71867 4.76907 4.81905 4.82350 4.85664 5.01973 5.08350 5.21447 5.30705 5.38168 5.41753 5.55884 5.58255 5.73486 5.78947 6.15251 6.61284 6.75429 7.34364 8.86031 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.035768 B = 0.005184 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.642046 B = 5399.821291 C = 6092.341983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.044 4.044 3 C -0.163 4.163 4 C 0.125 3.875 5 C -0.169 4.169 6 C -0.044 4.044 7 C -0.117 4.117 8 C -0.085 4.085 9 Cl -0.057 7.057 10 C -0.057 4.057 11 C 0.015 3.985 12 H 0.001 0.999 13 C -0.532 4.532 14 H 0.066 0.934 15 C 0.014 3.986 16 N -0.920 5.920 17 Si 0.964 3.036 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.281 1.281 21 C 0.071 3.929 22 O -0.339 6.339 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.147 0.853 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.266 0.734 33 H 0.041 0.959 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.092 -9.435 -2.886 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.045 4.045 3 C -0.181 4.181 4 C 0.079 3.921 5 C -0.170 4.170 6 C -0.045 4.045 7 C -0.173 4.173 8 C -0.112 4.112 9 Cl -0.029 7.029 10 C -0.094 4.094 11 C -0.003 4.003 12 H 0.019 0.981 13 C -0.570 4.570 14 H 0.084 0.916 15 C -0.185 4.185 16 N -0.559 5.559 17 Si 0.789 3.211 18 H -0.187 1.187 19 H -0.204 1.204 20 H -0.207 1.207 21 C -0.003 4.003 22 O -0.253 6.253 23 H 0.105 0.895 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.164 0.836 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.198 -9.212 -2.785 15.537 hybrid contribution 1.328 0.376 0.036 1.381 sum -10.869 -8.835 -2.749 14.274 Atomic orbital electron populations 1.20898 0.87587 1.04382 1.03890 1.19726 0.98041 0.89756 0.96943 1.20550 0.90221 0.99185 1.08181 1.19297 0.92497 0.85112 0.95204 1.20001 0.97080 0.91979 1.07959 1.19686 0.91958 0.95642 0.97250 1.20934 1.00335 0.92525 1.03552 1.20482 0.91283 0.87281 1.12122 1.98296 1.76041 1.31353 1.97163 1.20478 0.88666 0.98813 1.01467 1.19214 0.95287 0.91407 0.94423 0.98071 1.21398 0.93112 1.00271 1.42213 0.91570 1.25847 1.03201 0.95256 0.94210 1.69953 1.37739 1.04686 1.43534 0.85408 0.79418 0.78447 0.77847 1.18725 1.20396 1.20731 1.23279 0.75446 1.04644 0.96931 1.85926 1.27686 1.28257 1.83417 0.89482 0.89636 0.90097 0.83551 0.89860 0.89604 0.90717 0.91063 0.90570 0.92426 0.94092 0.87134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 9.62 71.24 0.68 -1.51 16 2 C -0.04 -1.24 5.88 -19.90 -0.12 -1.35 16 3 C -0.16 -5.40 9.59 22.42 0.22 -5.18 16 4 C 0.12 5.09 6.47 22.52 0.15 5.24 16 5 C -0.17 -6.59 5.75 -19.75 -0.11 -6.70 16 6 C -0.04 -1.44 5.88 -19.81 -0.12 -1.56 16 7 C -0.12 -3.09 8.81 71.24 0.63 -2.46 16 8 C -0.08 -2.48 6.31 22.30 0.14 -2.34 16 9 Cl -0.06 -1.34 25.62 -2.72 -0.07 -1.41 16 10 C -0.06 -2.39 3.92 29.90 0.12 -2.28 16 11 C 0.02 0.78 2.33 -11.38 -0.03 0.75 16 12 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 13 C -0.53 -28.23 8.55 25.60 0.22 -28.01 16 14 H 0.07 3.38 7.75 -2.91 -0.02 3.36 16 15 C 0.01 0.75 5.30 84.66 0.45 1.20 16 16 N -0.92 -51.76 11.32 21.45 0.24 -51.51 16 17 Si 0.96 41.85 29.54 68.60 2.03 43.88 16 18 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 19 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 21 C 0.07 3.53 6.14 72.12 0.44 3.97 16 22 O -0.34 -15.78 10.27 -92.09 -0.95 -16.72 16 23 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 24 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 25 H 0.08 1.46 6.91 -2.39 -0.02 1.44 16 26 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 27 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.09 1.95 6.89 -2.38 -0.02 1.93 16 29 H 0.07 1.97 6.81 -2.39 -0.02 1.95 16 30 H 0.07 2.88 8.08 -2.39 -0.02 2.86 16 31 H 0.08 2.99 7.29 -2.39 -0.02 2.97 16 32 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 33 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.11 6.03 6.02 -2.39 -0.01 6.02 16 Total: -1.00 -58.70 289.37 5.03 -53.68 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 1.11 Total: 12.32 kcal Atomic # 6 Polarization: -42.90 SS G_CDS: 2.67 Total: -40.23 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.24 Total: -51.51 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.95 Total: -16.72 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.07 Total: -1.41 kcal Total: -58.70 5.03 -53.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263226.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.623 kcal (2) G-P(sol) polarization free energy of solvation -58.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds