Wall clock time and date at job start Mon Mar 30 2020 06:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86795 * 119.99977 * 2 1 4 4 H 1.48502 * 109.47394 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47053 * 300.00044 * 3 2 1 6 6 H 1.48500 * 109.47428 * 59.99480 * 3 2 1 7 7 C 1.40048 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00414 * 179.97438 * 7 2 1 9 9 C 1.46380 * 119.99931 * 359.97438 * 7 2 1 10 10 O 1.21691 * 119.99883 * 15.91991 * 9 7 2 11 11 N 1.34780 * 119.99891 * 195.91769 * 9 7 2 12 12 C 1.46928 * 120.60344 * 3.56755 * 11 9 7 13 13 C 1.53195 * 108.77031 * 233.57547 * 12 11 9 14 14 C 1.53038 * 109.33748 * 305.41429 * 13 12 11 15 15 C 1.53040 * 109.53933 * 61.35150 * 14 13 12 16 16 C 1.46922 * 120.62647 * 183.58684 * 11 9 7 17 17 H 1.09003 * 109.58445 * 246.17641 * 16 11 9 18 18 C 1.50692 * 109.70783 * 6.53439 * 16 11 9 19 19 N 1.29028 * 124.91941 * 57.59697 * 18 16 11 20 20 C 1.31778 * 117.13210 * 179.81212 * 19 18 16 21 21 C 1.33646 * 114.49359 * 0.47939 * 20 19 18 22 22 S 1.70978 * 124.91933 * 237.90356 * 18 16 11 23 23 H 0.97001 * 119.99986 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.56282 * 113.80885 * 12 11 9 25 25 H 1.09001 * 109.61760 * 353.37573 * 12 11 9 26 26 H 1.09002 * 109.49968 * 185.44865 * 13 12 11 27 27 H 1.09003 * 109.49818 * 65.38415 * 13 12 11 28 28 H 1.09000 * 109.45865 * 181.36789 * 14 13 12 29 29 H 1.09000 * 109.46180 * 301.34067 * 14 13 12 30 30 H 1.09003 * 109.50171 * 58.58149 * 15 14 13 31 31 H 1.09002 * 109.50189 * 178.68421 * 15 14 13 32 32 H 1.07995 * 122.75911 * 180.22868 * 20 19 18 33 33 H 1.08002 * 126.03387 * 179.78678 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3964 -1.2125 6 1 1.8819 2.3965 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0017 10 8 0.0931 -2.5009 -0.2869 11 7 1.9104 -3.6252 0.3223 12 6 3.3165 -3.6062 0.7482 13 6 4.1103 -4.5797 -0.1288 14 6 3.4547 -5.9614 -0.0737 15 6 2.0278 -5.8730 -0.6198 16 6 1.2101 -4.9148 0.2521 17 1 1.1079 -5.3302 1.2548 18 6 -0.1551 -4.7194 -0.3552 19 7 -0.3796 -4.2099 -1.5192 20 6 -1.6372 -4.1139 -1.9008 21 6 -2.5236 -4.5585 -1.0048 22 16 -1.6313 -5.1339 0.4013 23 1 -0.4850 0.8401 0.0004 24 1 3.3861 -3.9144 1.7914 25 1 3.7198 -2.6000 0.6345 26 1 5.1343 -4.6480 0.2384 27 1 4.1160 -4.2204 -1.1579 28 1 4.0319 -6.6615 -0.6777 29 1 3.4273 -6.3095 0.9588 30 1 2.0525 -5.5013 -1.6442 31 1 1.5695 -6.8619 -0.6020 32 1 -1.9281 -3.7056 -2.8573 33 1 -3.5972 -4.5646 -1.1222 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274172864.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:33 Heat of formation + Delta-G solvation = 35.375426 kcal Electronic energy + Delta-G solvation = -18818.960593 eV Core-core repulsion = 15972.596251 eV Total energy + Delta-G solvation = -2846.364342 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 4.17 seconds Orbital eigenvalues (eV) -39.45243 -37.76896 -35.73335 -32.66456 -31.73289 -31.51424 -28.48735 -26.45233 -25.04041 -23.62399 -22.21549 -20.52881 -19.82766 -18.09814 -17.41861 -16.32103 -15.63727 -14.78756 -14.53885 -14.42527 -13.90234 -13.76634 -13.56537 -13.02993 -12.93261 -12.59031 -12.21250 -11.83885 -11.47663 -11.15165 -11.01679 -10.86766 -10.71547 -10.61683 -10.47844 -10.30919 -10.19698 -9.78145 -8.89639 -8.68779 -8.50159 -8.17394 -7.21137 -6.98078 -6.14560 -4.59827 1.66927 2.29208 2.61417 3.12268 3.20890 3.24412 3.88160 4.10900 4.49630 4.66821 4.89368 5.21494 5.25611 5.39654 5.61102 5.69800 5.80721 5.87698 5.93900 5.99013 6.13475 6.23544 6.26472 6.38182 6.42964 6.54759 6.57311 6.81013 7.11074 7.46441 7.53687 8.11313 8.33963 8.85220 9.04777 9.41983 10.58698 10.76284 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017128 B = 0.009547 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.379103 B = 2932.077741 C = 4219.689066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.090 3.910 3 Si 0.904 3.096 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.072 0.928 9 C 0.564 3.436 10 O -0.543 6.543 11 N -0.633 5.633 12 C 0.124 3.876 13 C -0.137 4.137 14 C -0.113 4.113 15 C -0.120 4.120 16 C 0.227 3.773 17 H 0.066 0.934 18 C 0.121 3.879 19 N -0.433 5.433 20 C 0.070 3.930 21 C -0.284 4.284 22 S 0.054 5.946 23 H 0.266 0.734 24 H 0.043 0.957 25 H 0.096 0.904 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.157 0.843 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.930 -9.993 0.937 10.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.129 4.129 3 Si 0.729 3.271 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.579 4.579 8 H 0.090 0.910 9 C 0.369 3.631 10 O -0.422 6.422 11 N -0.373 5.373 12 C -0.001 4.001 13 C -0.176 4.176 14 C -0.151 4.151 15 C -0.160 4.160 16 C 0.119 3.881 17 H 0.083 0.917 18 C -0.157 4.157 19 N -0.148 5.148 20 C -0.083 4.083 21 C -0.423 4.423 22 S 0.308 5.692 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.114 0.886 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.175 0.825 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.243 -10.116 1.425 10.459 hybrid contribution 0.102 1.488 -0.750 1.669 sum 2.345 -8.628 0.675 8.966 Atomic orbital electron populations 1.69976 1.06960 1.27103 1.36154 1.25654 0.94573 1.00096 0.92539 0.86368 0.80531 0.82045 0.78117 1.18785 1.20267 1.20308 1.20906 0.93417 0.89067 1.54516 0.91033 1.18194 0.86803 0.81977 0.76113 1.90662 1.16470 1.83251 1.51811 1.48381 1.11190 1.04260 1.73428 1.21450 0.82273 1.00712 0.95631 1.21976 0.98457 0.95582 1.01566 1.21464 0.95592 0.97306 1.00700 1.21904 0.95177 0.98197 1.00747 1.19240 0.85654 0.87287 0.95962 0.91657 1.26269 0.98034 0.97785 0.93625 1.66058 1.20839 1.11794 1.16151 1.21462 0.87059 0.99444 1.00296 1.26473 1.03517 1.15055 0.97288 1.83319 1.02094 1.60802 1.23030 0.92280 0.93897 0.88570 0.91916 0.91588 0.92277 0.92259 0.90599 0.91938 0.82541 0.82250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.98 11.95 55.55 0.66 -22.32 16 2 C 0.09 2.50 5.49 -17.37 -0.10 2.41 16 3 Si 0.90 20.23 29.56 -169.99 -5.02 15.20 16 4 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -15.03 8.73 -35.63 -0.31 -15.35 16 8 H 0.07 1.83 5.87 -52.49 -0.31 1.52 16 9 C 0.56 15.63 7.34 -12.98 -0.10 15.54 16 10 O -0.54 -16.39 10.28 5.20 0.05 -16.33 16 11 N -0.63 -14.17 2.97 -168.18 -0.50 -14.67 16 12 C 0.12 2.25 6.34 -3.71 -0.02 2.22 16 13 C -0.14 -2.04 6.08 -26.61 -0.16 -2.20 16 14 C -0.11 -1.52 5.88 -26.69 -0.16 -1.68 16 15 C -0.12 -1.94 5.35 -26.61 -0.14 -2.08 16 16 C 0.23 4.47 3.38 -68.75 -0.23 4.23 16 17 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 18 C 0.12 2.62 3.92 -13.46 -0.05 2.57 16 19 N -0.43 -10.23 8.16 -11.87 -0.10 -10.33 16 20 C 0.07 1.48 11.03 -19.18 -0.21 1.27 16 21 C -0.28 -5.40 11.37 29.12 0.33 -5.07 16 22 S 0.05 1.04 23.17 -107.50 -2.49 -1.46 16 23 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.10 1.86 5.38 -51.93 -0.28 1.58 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.16 2.96 8.06 -52.49 -0.42 2.54 16 33 H 0.16 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 283.11 15.07 4.27 4.27 Total: -1.00 -33.58 283.11 -8.23 -41.81 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -3.95 Total: 1.96 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -1.15 Total: 1.86 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.07 Total: -47.31 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.05 Total: -16.33 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.49 Total: -1.46 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.58 -8.23 -41.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274172864.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.185 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.17 seconds