Wall clock time and date at job start Mon Mar 30 2020 06:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86795 * 119.99977 * 2 1 4 4 H 1.48502 * 109.47394 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47053 * 300.00044 * 3 2 1 6 6 H 1.48500 * 109.47428 * 59.99480 * 3 2 1 7 7 C 1.40048 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00414 * 179.97438 * 7 2 1 9 9 C 1.46380 * 119.99931 * 359.97438 * 7 2 1 10 10 O 1.21691 * 119.99883 * 15.91991 * 9 7 2 11 11 N 1.34780 * 119.99891 * 195.91769 * 9 7 2 12 12 C 1.46928 * 120.60344 * 3.56755 * 11 9 7 13 13 C 1.53195 * 108.77031 * 233.57547 * 12 11 9 14 14 C 1.53038 * 109.33748 * 305.41429 * 13 12 11 15 15 C 1.53040 * 109.53933 * 61.35150 * 14 13 12 16 16 C 1.46922 * 120.62647 * 183.58684 * 11 9 7 17 17 H 1.09003 * 109.58445 * 246.17641 * 16 11 9 18 18 C 1.50692 * 109.70783 * 6.53439 * 16 11 9 19 19 N 1.29028 * 124.91941 * 57.59697 * 18 16 11 20 20 C 1.31778 * 117.13210 * 179.81212 * 19 18 16 21 21 C 1.33646 * 114.49359 * 0.47939 * 20 19 18 22 22 S 1.70978 * 124.91933 * 237.90356 * 18 16 11 23 23 H 0.97001 * 119.99986 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.56282 * 113.80885 * 12 11 9 25 25 H 1.09001 * 109.61760 * 353.37573 * 12 11 9 26 26 H 1.09002 * 109.49968 * 185.44865 * 13 12 11 27 27 H 1.09003 * 109.49818 * 65.38415 * 13 12 11 28 28 H 1.09000 * 109.45865 * 181.36789 * 14 13 12 29 29 H 1.09000 * 109.46180 * 301.34067 * 14 13 12 30 30 H 1.09003 * 109.50171 * 58.58149 * 15 14 13 31 31 H 1.09002 * 109.50189 * 178.68421 * 15 14 13 32 32 H 1.07995 * 122.75911 * 180.22868 * 20 19 18 33 33 H 1.08002 * 126.03387 * 179.78678 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3964 -1.2125 6 1 1.8819 2.3965 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0017 10 8 0.0931 -2.5009 -0.2869 11 7 1.9104 -3.6252 0.3223 12 6 3.3165 -3.6062 0.7482 13 6 4.1103 -4.5797 -0.1288 14 6 3.4547 -5.9614 -0.0737 15 6 2.0278 -5.8730 -0.6198 16 6 1.2101 -4.9148 0.2521 17 1 1.1079 -5.3302 1.2548 18 6 -0.1551 -4.7194 -0.3552 19 7 -0.3796 -4.2099 -1.5192 20 6 -1.6372 -4.1139 -1.9008 21 6 -2.5236 -4.5585 -1.0048 22 16 -1.6313 -5.1339 0.4013 23 1 -0.4850 0.8401 0.0004 24 1 3.3861 -3.9144 1.7914 25 1 3.7198 -2.6000 0.6345 26 1 5.1343 -4.6480 0.2384 27 1 4.1160 -4.2204 -1.1579 28 1 4.0319 -6.6615 -0.6777 29 1 3.4273 -6.3095 0.9588 30 1 2.0525 -5.5013 -1.6442 31 1 1.5695 -6.8619 -0.6020 32 1 -1.9281 -3.7056 -2.8573 33 1 -3.5972 -4.5646 -1.1222 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274172864.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:24 Heat of formation + Delta-G solvation = 13.003852 kcal Electronic energy + Delta-G solvation = -18819.930697 eV Core-core repulsion = 15972.596251 eV Total energy + Delta-G solvation = -2847.334446 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 4.21 seconds Orbital eigenvalues (eV) -41.07157 -39.36908 -37.50886 -34.66169 -33.29149 -33.06587 -30.00188 -28.42366 -26.64125 -25.09919 -23.72340 -22.15745 -21.33845 -19.72356 -19.03016 -18.17110 -17.50628 -16.41930 -16.14836 -16.06823 -15.45503 -15.13035 -15.03860 -14.67977 -14.38143 -14.17031 -13.91618 -13.49022 -13.09867 -12.93616 -12.76944 -12.44318 -12.31923 -12.14938 -12.00160 -11.75064 -11.54789 -11.27767 -10.92558 -10.37650 -10.14383 -9.75957 -8.93459 -8.90007 -8.17350 -6.73078 0.09752 0.77243 1.04289 1.36269 1.37647 1.53191 2.20668 2.30819 2.56668 2.94197 3.44551 3.67109 3.91759 4.10363 4.12556 4.31339 4.38713 4.45602 4.48663 4.67635 4.84703 4.91207 5.00839 5.06248 5.16367 5.24204 5.26860 5.44284 5.51077 5.59069 5.81273 6.19373 6.43104 6.95522 7.27902 7.50089 8.56529 8.74764 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017128 B = 0.009547 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.379103 B = 2932.077741 C = 4219.689066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.036 3.964 3 Si 0.986 3.014 4 H -0.248 1.248 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.569 4.569 8 H 0.084 0.916 9 C 0.546 3.454 10 O -0.578 6.578 11 N -0.637 5.637 12 C 0.116 3.884 13 C -0.129 4.129 14 C -0.106 4.106 15 C -0.112 4.112 16 C 0.217 3.783 17 H 0.083 0.917 18 C 0.093 3.907 19 N -0.470 5.470 20 C 0.035 3.965 21 C -0.275 4.275 22 S 0.089 5.911 23 H 0.269 0.731 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.166 0.834 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.390 -11.035 1.872 12.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.178 4.178 3 Si 0.806 3.194 4 H -0.171 1.171 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.606 4.606 8 H 0.102 0.898 9 C 0.350 3.650 10 O -0.460 6.460 11 N -0.376 5.376 12 C -0.007 4.007 13 C -0.168 4.168 14 C -0.144 4.144 15 C -0.152 4.152 16 C 0.110 3.890 17 H 0.101 0.899 18 C -0.184 4.184 19 N -0.185 5.185 20 C -0.117 4.117 21 C -0.414 4.414 22 S 0.343 5.657 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.116 0.884 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.184 0.816 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 3.747 -11.207 2.372 12.053 hybrid contribution -0.411 1.710 -1.018 2.032 sum 3.336 -9.498 1.354 10.157 Atomic orbital electron populations 1.70140 1.09133 1.28247 1.38111 1.26750 0.95388 1.04269 0.91442 0.85143 0.79615 0.76454 0.78152 1.17070 1.20209 1.19415 1.21409 0.94321 0.90091 1.54792 0.89792 1.18464 0.86765 0.83589 0.76173 1.90621 1.17759 1.84744 1.52923 1.48211 1.12746 1.04204 1.72438 1.21674 0.80471 1.01005 0.97575 1.21915 0.99897 0.95381 0.99561 1.21478 0.93619 0.96891 1.02369 1.21853 0.96812 0.98083 0.98413 1.19633 0.85318 0.86662 0.97430 0.89919 1.26675 0.99779 0.98281 0.93698 1.66003 1.22282 1.12659 1.17597 1.21761 0.87148 1.01103 1.01638 1.26931 1.05039 1.12867 0.96521 1.83042 1.00627 1.59794 1.22282 0.92166 0.91693 0.90425 0.88378 0.93801 0.89530 0.90088 0.93543 0.89552 0.81647 0.78912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -50.69 11.95 21.84 0.26 -50.43 16 2 C 0.04 2.00 5.49 85.30 0.47 2.47 16 3 Si 0.99 42.04 29.56 68.60 2.03 44.07 16 4 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.57 -32.25 8.73 24.83 0.22 -32.04 16 8 H 0.08 4.36 5.87 -2.91 -0.02 4.34 16 9 C 0.55 31.10 7.34 86.36 0.63 31.73 16 10 O -0.58 -36.12 10.28 -4.32 -0.04 -36.17 16 11 N -0.64 -28.60 2.97 -804.21 -2.39 -30.99 16 12 C 0.12 4.06 6.34 86.36 0.55 4.61 16 13 C -0.13 -3.52 6.08 30.67 0.19 -3.33 16 14 C -0.11 -2.49 5.88 30.62 0.18 -2.31 16 15 C -0.11 -3.43 5.35 30.67 0.16 -3.26 16 16 C 0.22 8.40 3.38 44.23 0.15 8.55 16 17 H 0.08 2.85 8.13 -2.39 -0.02 2.83 16 18 C 0.09 4.08 3.92 88.52 0.35 4.42 16 19 N -0.47 -22.79 8.16 -191.45 -1.56 -24.35 16 20 C 0.04 1.52 11.03 83.66 0.92 2.44 16 21 C -0.27 -10.28 11.37 66.78 0.76 -9.52 16 22 S 0.09 3.33 23.17 -56.49 -1.31 2.02 16 23 H 0.27 15.18 8.29 -92.71 -0.77 14.41 16 24 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.08 2.98 5.38 -2.39 -0.01 2.97 16 26 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.17 6.50 8.06 -2.91 -0.02 6.48 16 33 H 0.19 5.66 8.06 -2.91 -0.02 5.64 16 Total: -1.00 -76.03 283.11 2.68 -73.35 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 1.12 Total: 18.74 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 4.58 Total: 3.75 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -3.69 Total: -105.77 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -0.04 Total: -36.17 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -1.31 Total: 2.02 kcal Total: -76.03 2.68 -73.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274172864.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.350 kcal (2) G-P(sol) polarization free energy of solvation -76.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.21 seconds