Wall clock time and date at job start Mon Mar 30 2020 06:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86799 * 119.99839 * 2 1 4 4 H 1.48503 * 109.46906 * 265.42624 * 3 2 1 5 5 H 1.48494 * 109.47278 * 25.42972 * 3 2 1 6 6 H 1.48506 * 109.46888 * 145.42682 * 3 2 1 7 7 C 1.40050 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99828 * 348.55245 * 7 2 1 9 9 C 1.46373 * 119.99862 * 168.54948 * 7 2 1 10 10 O 1.21691 * 119.99907 * 351.58694 * 9 7 2 11 11 N 1.34771 * 120.00111 * 171.57885 * 9 7 2 12 12 C 1.46928 * 120.63028 * 5.24424 * 11 9 7 13 13 C 1.53187 * 108.78088 * 126.36768 * 12 11 9 14 14 C 1.53045 * 109.31222 * 54.63268 * 13 12 11 15 15 C 1.53074 * 109.65777 * 298.70563 * 14 13 12 16 16 C 1.46924 * 120.63115 * 185.21889 * 11 9 7 17 17 H 1.09004 * 109.58821 * 113.70600 * 16 11 9 18 18 C 1.50697 * 109.59036 * 353.41773 * 16 11 9 19 19 N 1.29031 * 124.91493 * 292.69227 * 18 16 11 20 20 C 1.31784 * 117.12108 * 179.97438 * 19 18 16 21 21 C 1.33632 * 114.50209 * 0.02562 * 20 19 18 22 22 S 1.70971 * 124.91518 * 112.68427 * 18 16 11 23 23 H 0.97001 * 119.99515 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.58806 * 246.15651 * 12 11 9 25 25 H 1.09001 * 109.58868 * 6.57702 * 12 11 9 26 26 H 1.08993 * 109.50157 * 174.58597 * 13 12 11 27 27 H 1.09004 * 109.49669 * 294.68518 * 13 12 11 28 28 H 1.08998 * 109.45691 * 58.65654 * 14 13 12 29 29 H 1.08993 * 109.46106 * 178.63574 * 14 13 12 30 30 H 1.09008 * 109.39105 * 301.27395 * 15 14 13 31 31 H 1.09000 * 109.62084 * 181.17164 * 15 14 13 32 32 H 1.08002 * 122.74527 * 179.97438 * 20 19 18 33 33 H 1.07998 * 126.03886 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.5849 1.9906 -1.3957 5 1 1.3933 2.6786 0.6012 6 1 3.4867 1.4700 0.7945 7 6 2.0070 -1.2129 0.0005 8 1 1.4831 -2.1388 0.1866 9 6 3.4489 -1.2256 -0.2511 10 8 4.0128 -0.2090 -0.6108 11 7 4.1520 -2.3632 -0.0843 12 6 3.4703 -3.6243 0.2378 13 6 3.8921 -4.6873 -0.7813 14 6 5.4191 -4.7869 -0.8062 15 6 6.0158 -3.4438 -1.2341 16 6 5.6148 -2.3661 -0.2218 17 1 6.0722 -2.5834 0.7435 18 6 6.0792 -1.0177 -0.7088 19 7 5.8328 -0.5296 -1.8775 20 6 6.3148 0.6681 -2.1421 21 6 7.0066 1.2207 -1.1412 22 16 7.0087 0.0868 0.2075 23 1 -0.4849 0.8401 0.0004 24 1 3.7526 -3.9466 1.2401 25 1 2.3911 -3.4791 0.1890 26 1 3.4693 -5.6511 -0.4979 27 1 3.5296 -4.4071 -1.7704 28 1 5.7825 -5.0428 0.1890 29 1 5.7211 -5.5596 -1.5130 30 1 5.6354 -3.1763 -2.2200 31 1 7.1024 -3.5213 -1.2717 32 1 6.1637 1.1621 -3.0906 33 1 7.4808 2.1909 -1.1563 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274172867.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:39 Heat of formation + Delta-G solvation = 23.330675 kcal Electronic energy + Delta-G solvation = -18936.996435 eV Core-core repulsion = 16090.109793 eV Total energy + Delta-G solvation = -2846.886642 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.71957 -38.02368 -36.23184 -32.92408 -31.96989 -31.87724 -28.65617 -26.80158 -25.22074 -23.85187 -22.39587 -20.64932 -19.94402 -18.23995 -17.53980 -16.58615 -15.88949 -15.14757 -14.78227 -14.50270 -14.07878 -13.90974 -13.71872 -13.19566 -12.94650 -12.76237 -12.35277 -12.07529 -11.89782 -11.73183 -11.07258 -10.94021 -10.85729 -10.70428 -10.51447 -10.38053 -10.22181 -9.40232 -9.04183 -8.87564 -8.75692 -8.36792 -7.56122 -7.20371 -6.63197 -4.84315 1.47950 2.11344 2.44020 3.45000 3.49032 3.65876 3.75178 4.19495 4.25740 4.55693 4.71425 5.10555 5.14401 5.25855 5.47843 5.49645 5.61607 5.71438 5.77241 5.87783 6.01139 6.12841 6.17094 6.22693 6.27592 6.45361 6.47508 6.70123 6.90908 7.02600 7.54960 7.85395 8.28160 8.63002 8.70229 9.12068 10.04106 10.36652 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015510 B = 0.012274 C = 0.007544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.854995 B = 2280.722181 C = 3710.443597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.104 3.896 3 Si 0.967 3.033 4 H -0.280 1.280 5 H -0.327 1.327 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.090 0.910 9 C 0.553 3.447 10 O -0.587 6.587 11 N -0.624 5.624 12 C 0.122 3.878 13 C -0.137 4.137 14 C -0.114 4.114 15 C -0.120 4.120 16 C 0.227 3.773 17 H 0.072 0.928 18 C 0.125 3.875 19 N -0.446 5.446 20 C 0.065 3.935 21 C -0.283 4.283 22 S 0.065 5.935 23 H 0.281 0.719 24 H 0.049 0.951 25 H 0.101 0.899 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.160 0.840 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.741 -5.750 0.214 13.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.114 4.114 3 Si 0.800 3.200 4 H -0.206 1.206 5 H -0.259 1.259 6 H -0.189 1.189 7 C -0.565 4.565 8 H 0.108 0.892 9 C 0.363 3.637 10 O -0.477 6.477 11 N -0.359 5.359 12 C -0.002 4.002 13 C -0.175 4.175 14 C -0.152 4.152 15 C -0.160 4.160 16 C 0.119 3.881 17 H 0.089 0.911 18 C -0.153 4.153 19 N -0.162 5.162 20 C -0.087 4.087 21 C -0.422 4.422 22 S 0.319 5.681 23 H 0.091 0.909 24 H 0.067 0.933 25 H 0.119 0.881 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.177 0.823 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 11.921 -5.505 0.681 13.149 hybrid contribution -0.128 1.279 -0.804 1.516 sum 11.793 -4.226 -0.123 12.528 Atomic orbital electron populations 1.69574 1.08014 1.29973 1.38052 1.25750 0.94651 1.02021 0.88950 0.85186 0.77789 0.77426 0.79597 1.20624 1.25888 1.18858 1.20755 0.89631 0.95857 1.50214 0.89229 1.18278 0.88070 0.80762 0.76614 1.90282 1.69632 1.32693 1.55106 1.47793 1.02858 1.09539 1.75747 1.21549 0.99466 0.83169 0.95989 1.21964 0.95546 0.98954 1.01073 1.21487 0.96068 0.96542 1.01086 1.21901 0.99923 0.94030 1.00152 1.19343 0.84020 0.87934 0.96827 0.91062 1.26263 0.97346 0.99164 0.92554 1.65993 1.18036 1.12433 1.19709 1.21489 0.95977 0.91460 0.99800 1.26541 1.13726 1.05328 0.96622 1.83424 1.51176 1.12411 1.21114 0.90859 0.93294 0.88145 0.91541 0.91469 0.92184 0.92083 0.90278 0.91727 0.82318 0.82041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.59 13.92 55.55 0.77 -22.82 16 2 C 0.10 2.98 5.52 -17.36 -0.10 2.89 16 3 Si 0.97 25.94 25.86 -169.99 -4.40 21.55 16 4 H -0.28 -7.84 7.11 56.52 0.40 -7.44 16 5 H -0.33 -8.44 7.11 56.52 0.40 -8.03 16 6 H -0.26 -7.37 6.62 56.52 0.37 -7.00 16 7 C -0.53 -14.71 9.40 -35.63 -0.33 -15.04 16 8 H 0.09 2.46 5.89 -52.49 -0.31 2.15 16 9 C 0.55 14.37 7.30 -12.99 -0.09 14.27 16 10 O -0.59 -16.10 7.38 5.20 0.04 -16.06 16 11 N -0.62 -13.17 2.97 -168.19 -0.50 -13.67 16 12 C 0.12 2.13 6.31 -3.71 -0.02 2.10 16 13 C -0.14 -1.96 6.08 -26.61 -0.16 -2.12 16 14 C -0.11 -1.45 5.88 -26.67 -0.16 -1.61 16 15 C -0.12 -1.83 5.33 -26.59 -0.14 -1.97 16 16 C 0.23 4.15 3.38 -68.75 -0.23 3.92 16 17 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 18 C 0.12 2.53 3.71 -13.46 -0.05 2.48 16 19 N -0.45 -9.74 8.44 -11.87 -0.10 -9.84 16 20 C 0.07 1.27 11.02 -19.19 -0.21 1.06 16 21 C -0.28 -5.02 11.37 29.12 0.33 -4.69 16 22 S 0.06 1.18 23.10 -107.50 -2.48 -1.31 16 23 H 0.28 7.45 8.29 -40.82 -0.34 7.11 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.10 1.94 5.37 -51.93 -0.28 1.66 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.39 7.99 -51.92 -0.41 0.97 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.16 2.71 8.06 -52.49 -0.42 2.29 16 33 H 0.16 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 278.45 15.07 4.20 4.20 Total: -1.00 -32.38 278.45 -7.61 -40.00 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -3.97 Total: -3.33 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -1.17 Total: 1.29 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.17 Total: -46.33 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.04 Total: -16.06 kcal Atomic # 14 Polarization: 25.94 SS G_CDS: -4.40 Total: 21.55 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.48 Total: -1.31 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.38 -7.61 -40.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274172867.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.327 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds