Wall clock time and date at job start Mon Mar 30 2020 06:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86799 * 119.99839 * 2 1 4 4 H 1.48503 * 109.46906 * 265.42624 * 3 2 1 5 5 H 1.48494 * 109.47278 * 25.42972 * 3 2 1 6 6 H 1.48506 * 109.46888 * 145.42682 * 3 2 1 7 7 C 1.40050 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99828 * 348.55245 * 7 2 1 9 9 C 1.46373 * 119.99862 * 168.54948 * 7 2 1 10 10 O 1.21691 * 119.99907 * 351.58694 * 9 7 2 11 11 N 1.34771 * 120.00111 * 171.57885 * 9 7 2 12 12 C 1.46928 * 120.63028 * 5.24424 * 11 9 7 13 13 C 1.53187 * 108.78088 * 126.36768 * 12 11 9 14 14 C 1.53045 * 109.31222 * 54.63268 * 13 12 11 15 15 C 1.53074 * 109.65777 * 298.70563 * 14 13 12 16 16 C 1.46924 * 120.63115 * 185.21889 * 11 9 7 17 17 H 1.09004 * 109.58821 * 113.70600 * 16 11 9 18 18 C 1.50697 * 109.59036 * 353.41773 * 16 11 9 19 19 N 1.29031 * 124.91493 * 292.69227 * 18 16 11 20 20 C 1.31784 * 117.12108 * 179.97438 * 19 18 16 21 21 C 1.33632 * 114.50209 * 0.02562 * 20 19 18 22 22 S 1.70971 * 124.91518 * 112.68427 * 18 16 11 23 23 H 0.97001 * 119.99515 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.58806 * 246.15651 * 12 11 9 25 25 H 1.09001 * 109.58868 * 6.57702 * 12 11 9 26 26 H 1.08993 * 109.50157 * 174.58597 * 13 12 11 27 27 H 1.09004 * 109.49669 * 294.68518 * 13 12 11 28 28 H 1.08998 * 109.45691 * 58.65654 * 14 13 12 29 29 H 1.08993 * 109.46106 * 178.63574 * 14 13 12 30 30 H 1.09008 * 109.39105 * 301.27395 * 15 14 13 31 31 H 1.09000 * 109.62084 * 181.17164 * 15 14 13 32 32 H 1.08002 * 122.74527 * 179.97438 * 20 19 18 33 33 H 1.07998 * 126.03886 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.5849 1.9906 -1.3957 5 1 1.3933 2.6786 0.6012 6 1 3.4867 1.4700 0.7945 7 6 2.0070 -1.2129 0.0005 8 1 1.4831 -2.1388 0.1866 9 6 3.4489 -1.2256 -0.2511 10 8 4.0128 -0.2090 -0.6108 11 7 4.1520 -2.3632 -0.0843 12 6 3.4703 -3.6243 0.2378 13 6 3.8921 -4.6873 -0.7813 14 6 5.4191 -4.7869 -0.8062 15 6 6.0158 -3.4438 -1.2341 16 6 5.6148 -2.3661 -0.2218 17 1 6.0722 -2.5834 0.7435 18 6 6.0792 -1.0177 -0.7088 19 7 5.8328 -0.5296 -1.8775 20 6 6.3148 0.6681 -2.1421 21 6 7.0066 1.2207 -1.1412 22 16 7.0087 0.0868 0.2075 23 1 -0.4849 0.8401 0.0004 24 1 3.7526 -3.9466 1.2401 25 1 2.3911 -3.4791 0.1890 26 1 3.4693 -5.6511 -0.4979 27 1 3.5296 -4.4071 -1.7704 28 1 5.7825 -5.0428 0.1890 29 1 5.7211 -5.5596 -1.5130 30 1 5.6354 -3.1763 -2.2200 31 1 7.1024 -3.5213 -1.2717 32 1 6.1637 1.1621 -3.0906 33 1 7.4808 2.1909 -1.1563 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274172867.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:37 Heat of formation + Delta-G solvation = 1.727432 kcal Electronic energy + Delta-G solvation = -18937.933222 eV Core-core repulsion = 16090.109793 eV Total energy + Delta-G solvation = -2847.823429 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.28427 -39.56307 -37.92070 -35.02127 -33.48230 -33.28294 -30.06266 -28.77209 -26.73912 -25.25601 -23.81966 -22.20546 -21.40224 -19.79671 -19.08413 -18.48461 -17.71565 -16.85487 -16.26458 -16.17693 -15.69220 -15.17259 -15.07999 -14.72176 -14.54321 -14.25437 -14.18434 -13.79230 -13.75154 -13.27766 -12.92374 -12.62585 -12.37240 -12.19540 -11.83381 -11.80863 -11.57924 -11.26061 -11.18166 -10.50209 -10.27186 -9.86674 -9.21375 -8.99955 -8.78428 -6.98380 0.02124 0.70194 0.98901 1.29057 1.33479 1.57557 2.07555 2.19490 2.35536 2.73147 3.33456 3.36469 3.87566 4.02964 4.07012 4.25924 4.33803 4.41174 4.43997 4.62182 4.78532 4.88202 4.95239 4.98854 5.04590 5.22579 5.23256 5.27598 5.45361 5.56656 5.68822 6.00719 6.22926 6.63336 7.16767 7.17007 8.05518 8.25448 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015510 B = 0.012274 C = 0.007544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.854995 B = 2280.722181 C = 3710.443597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.073 3.927 3 Si 1.016 2.984 4 H -0.301 1.301 5 H -0.313 1.313 6 H -0.281 1.281 7 C -0.549 4.549 8 H 0.083 0.917 9 C 0.550 3.450 10 O -0.604 6.604 11 N -0.624 5.624 12 C 0.115 3.885 13 C -0.130 4.130 14 C -0.107 4.107 15 C -0.112 4.112 16 C 0.218 3.782 17 H 0.096 0.904 18 C 0.098 3.902 19 N -0.478 5.478 20 C 0.034 3.966 21 C -0.274 4.274 22 S 0.089 5.911 23 H 0.289 0.711 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.173 0.827 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.654 -6.836 0.925 15.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.142 4.142 3 Si 0.850 3.150 4 H -0.229 1.229 5 H -0.244 1.244 6 H -0.208 1.208 7 C -0.585 4.585 8 H 0.101 0.899 9 C 0.357 3.643 10 O -0.496 6.496 11 N -0.359 5.359 12 C -0.008 4.008 13 C -0.168 4.168 14 C -0.144 4.144 15 C -0.152 4.152 16 C 0.111 3.889 17 H 0.114 0.886 18 C -0.180 4.180 19 N -0.194 5.194 20 C -0.118 4.118 21 C -0.412 4.412 22 S 0.343 5.657 23 H 0.099 0.901 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.117 0.883 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.190 0.810 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 13.838 -6.624 1.402 15.406 hybrid contribution -0.617 1.584 -1.027 1.986 sum 13.221 -5.040 0.376 14.154 Atomic orbital electron populations 1.69588 1.08371 1.30767 1.39611 1.26190 0.95127 1.03593 0.89305 0.84474 0.76404 0.76334 0.77752 1.22904 1.24370 1.20792 1.21028 0.91213 0.95602 1.50670 0.89900 1.18160 0.87775 0.82016 0.76347 1.90257 1.70171 1.33835 1.55313 1.47724 1.04483 1.09300 1.74362 1.21755 0.97858 0.82634 0.98520 1.21912 0.97197 0.99051 0.98622 1.21493 0.94248 0.95549 1.03119 1.21859 1.01451 0.94280 0.97624 1.19773 0.81919 0.88337 0.98879 0.88622 1.26639 0.98264 1.00359 0.92708 1.65972 1.18890 1.13631 1.20924 1.21837 0.97140 0.91551 1.01229 1.26999 1.12259 1.06240 0.95748 1.83239 1.50104 1.11752 1.20589 0.90131 0.90624 0.90817 0.88347 0.93903 0.89783 0.89583 0.93236 0.89282 0.80985 0.78796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.29 13.92 21.84 0.30 -48.99 16 2 C 0.07 4.23 5.52 85.30 0.47 4.70 16 3 Si 1.02 54.42 25.86 68.60 1.77 56.19 16 4 H -0.30 -17.01 7.11 99.48 0.71 -16.30 16 5 H -0.31 -15.67 7.11 99.48 0.71 -14.97 16 6 H -0.28 -15.72 6.62 99.48 0.66 -15.06 16 7 C -0.55 -31.11 9.40 24.83 0.23 -30.88 16 8 H 0.08 4.70 5.89 -2.91 -0.02 4.68 16 9 C 0.55 28.78 7.30 86.36 0.63 29.41 16 10 O -0.60 -33.30 7.38 -4.32 -0.03 -33.33 16 11 N -0.62 -25.85 2.97 -804.25 -2.39 -28.25 16 12 C 0.11 3.84 6.31 86.36 0.55 4.39 16 13 C -0.13 -3.38 6.08 30.67 0.19 -3.20 16 14 C -0.11 -2.30 5.88 30.63 0.18 -2.12 16 15 C -0.11 -3.14 5.33 30.68 0.16 -2.97 16 16 C 0.22 7.56 3.38 44.23 0.15 7.71 16 17 H 0.10 2.84 8.13 -2.38 -0.02 2.82 16 18 C 0.10 3.86 3.71 88.52 0.33 4.19 16 19 N -0.48 -20.74 8.44 -191.45 -1.62 -22.36 16 20 C 0.03 1.30 11.02 83.65 0.92 2.22 16 21 C -0.27 -9.21 11.37 66.77 0.76 -8.45 16 22 S 0.09 3.07 23.10 -56.49 -1.31 1.77 16 23 H 0.29 15.40 8.29 -92.71 -0.77 14.63 16 24 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.07 2.87 5.37 -2.39 -0.01 2.85 16 26 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.69 7.99 -2.38 -0.02 1.67 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.17 5.84 8.06 -2.91 -0.02 5.81 16 33 H 0.19 5.03 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -70.82 278.45 2.37 -68.45 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: 1.07 Total: 1.50 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 4.57 Total: 5.01 kcal Atomic # 7 Polarization: -95.89 SS G_CDS: -3.70 Total: -99.59 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.03 Total: -33.33 kcal Atomic # 14 Polarization: 54.42 SS G_CDS: 1.77 Total: 56.19 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.31 Total: 1.77 kcal Total: -70.82 2.37 -68.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274172867.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.174 kcal (2) G-P(sol) polarization free energy of solvation -70.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds