Wall clock time and date at job start Mon Mar 30 2020 08:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86790 * 120.00146 * 2 1 4 4 H 1.48497 * 109.47542 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47370 * 300.00593 * 3 2 1 6 6 H 1.48507 * 109.47108 * 60.00212 * 3 2 1 7 7 C 1.37875 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99818 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00324 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.67474 * 61.78356 * 9 7 2 11 11 C 1.54886 * 110.75487 * 298.54567 * 9 7 2 12 12 C 1.54268 * 104.19503 * 203.74446 * 11 9 7 13 13 C 1.53869 * 106.60150 * 23.61168 * 12 11 9 14 14 H 1.09004 * 110.03350 * 240.67176 * 13 12 11 15 15 N 1.46499 * 110.03382 * 119.28455 * 13 12 11 16 16 C 1.39173 * 119.99960 * 86.73293 * 15 13 12 17 17 C 1.39533 * 120.85342 * 359.44279 * 16 15 13 18 18 C 1.37844 * 119.09316 * 179.71002 * 17 16 15 19 19 N 1.32028 * 120.86112 * 0.58088 * 18 17 16 20 20 C 1.32073 * 121.89203 * 359.71338 * 19 18 17 21 21 Cl 1.73599 * 119.59693 * 180.02562 * 20 19 18 22 22 C 1.38087 * 120.80911 * 359.97438 * 20 19 18 23 23 C 1.54267 * 106.59798 * 0.02562 * 13 12 11 24 24 H 0.96997 * 120.00574 * 359.97438 * 1 2 3 25 25 H 1.08998 * 110.48734 * 85.06308 * 11 9 7 26 26 H 1.08998 * 110.60234 * 322.47854 * 11 9 7 27 27 H 1.09004 * 110.03203 * 264.32231 * 12 11 9 28 28 H 1.09000 * 110.03396 * 142.90028 * 12 11 9 29 29 H 0.97001 * 119.99790 * 266.45020 * 15 13 12 30 30 H 1.07999 * 120.45743 * 359.97438 * 17 16 15 31 31 H 1.08004 * 119.56970 * 180.29885 * 18 17 16 32 32 H 1.07996 * 120.47427 * 180.02562 * 22 20 19 33 33 H 1.08998 * 110.48824 * 95.06689 * 23 13 12 34 34 H 1.08999 * 110.48755 * 217.71673 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6406 -2.5912 -0.8989 11 6 0.3776 -2.6287 1.2721 12 6 0.1831 -4.1494 1.4442 13 6 1.3581 -4.8278 0.7184 14 1 0.9840 -5.4665 -0.0819 15 7 2.1435 -5.6209 1.6673 16 6 1.7813 -6.9363 1.9421 17 6 0.6668 -7.5138 1.3326 18 6 0.3446 -8.8215 1.6265 19 7 1.0681 -9.5218 2.4805 20 6 2.1263 -9.0098 3.0825 21 17 3.0354 -9.9848 4.1946 22 6 2.5192 -7.7089 2.8374 23 6 2.2261 -3.6958 0.1312 24 1 -0.4851 0.8400 0.0004 25 1 -0.5833 -2.1352 1.1272 26 1 0.8940 -2.2101 2.1358 27 1 -0.7612 -4.4582 0.9957 28 1 0.1971 -4.4102 2.5024 29 1 2.9183 -5.2305 2.1010 30 1 0.0673 -6.9455 0.6369 31 1 -0.5136 -9.2777 1.1555 32 1 3.3856 -7.2959 3.3323 33 1 3.0429 -3.4502 0.8098 34 1 2.6139 -3.9806 -0.8469 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294934781.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:15:32 Heat of formation + Delta-G solvation = 12.596387 kcal Electronic energy + Delta-G solvation = -17334.412237 eV Core-core repulsion = 14485.016415 eV Total energy + Delta-G solvation = -2849.395822 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.24411 -38.02454 -36.62403 -34.93074 -32.45789 -30.99654 -30.14326 -28.31690 -26.81907 -24.25613 -23.43468 -22.42210 -19.69696 -19.42622 -17.84038 -16.93265 -16.19781 -15.72852 -15.21658 -14.86415 -14.67556 -14.39692 -14.03838 -13.81671 -12.87784 -12.54127 -12.34280 -11.89646 -11.68362 -11.51594 -11.34025 -11.14709 -10.98463 -10.61948 -10.43540 -10.32794 -10.04474 -9.65367 -9.57244 -9.33480 -9.01305 -8.90676 -8.46665 -7.76015 -6.09855 -4.13629 1.01858 1.48049 1.80627 3.23558 3.32399 3.35072 3.43583 3.76835 4.36500 4.54578 4.95824 5.05360 5.12277 5.21998 5.23990 5.45554 5.56700 5.62908 5.71688 5.98208 6.10622 6.27607 6.38599 6.45573 6.55266 6.57189 6.77388 7.02471 7.16248 7.35571 7.60969 7.68517 7.77431 7.87521 7.91966 8.32281 8.88522 9.51390 10.99201 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.045164 B = 0.003560 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.817564 B = 7863.963297 C = 8212.458777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.052 3.948 10 H 0.033 0.967 11 C -0.100 4.100 12 C -0.141 4.141 13 C 0.138 3.862 14 H 0.075 0.925 15 N -0.714 5.714 16 C 0.273 3.727 17 C -0.250 4.250 18 C 0.155 3.845 19 N -0.533 5.533 20 C 0.216 3.784 21 Cl -0.046 7.046 22 C -0.243 4.243 23 C -0.121 4.121 24 H 0.260 0.740 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.403 0.597 30 H 0.140 0.860 31 H 0.160 0.840 32 H 0.138 0.862 33 H 0.062 0.938 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.367 -14.256 4.125 15.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.033 3.967 10 H 0.051 0.949 11 C -0.138 4.138 12 C -0.180 4.180 13 C 0.034 3.966 14 H 0.093 0.907 15 N -0.339 5.339 16 C 0.157 3.843 17 C -0.276 4.276 18 C 0.000 4.000 19 N -0.248 5.248 20 C 0.053 3.947 21 Cl -0.017 7.017 22 C -0.270 4.270 23 C -0.159 4.159 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.239 0.761 30 H 0.158 0.842 31 H 0.178 0.822 32 H 0.156 0.844 33 H 0.081 0.919 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.940 -14.936 4.247 15.649 hybrid contribution 1.009 1.888 0.159 2.147 sum 2.949 -13.048 4.406 14.084 Atomic orbital electron populations 1.69953 1.05881 1.26468 1.50314 1.24969 0.94851 0.99087 0.94953 0.86576 0.80142 0.83897 0.77616 1.19817 1.21014 1.21040 1.21119 0.92815 0.90399 1.51138 0.92596 1.19561 0.91928 0.91084 0.94094 0.94928 1.22300 1.01798 0.90105 0.99625 1.22770 0.96643 0.99460 0.99139 1.22005 0.92533 0.92132 0.89900 0.90689 1.45279 1.32479 1.08973 1.47120 1.17989 0.91197 0.85255 0.89900 1.21768 1.00595 0.97918 1.07289 1.22296 0.96280 0.90100 0.91362 1.67003 1.07135 1.38914 1.11788 1.21143 0.92094 0.88624 0.92884 1.98382 1.71420 1.72111 1.59808 1.21117 1.05489 0.94237 1.06196 1.22756 0.98814 0.95287 0.99036 0.93043 0.91126 0.93453 0.92560 0.92811 0.76123 0.84180 0.82248 0.84422 0.91941 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.40 12.02 55.43 0.67 -23.73 16 2 C 0.06 1.68 5.33 -17.82 -0.10 1.59 16 3 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -13.34 8.54 -34.44 -0.29 -13.64 16 8 H 0.06 1.43 7.78 -52.48 -0.41 1.02 16 9 C 0.05 1.18 2.83 -89.76 -0.25 0.93 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.10 -2.14 5.56 -25.07 -0.14 -2.28 16 12 C -0.14 -2.39 6.59 -25.62 -0.17 -2.56 16 13 C 0.14 2.11 2.93 -66.82 -0.20 1.92 16 14 H 0.08 1.08 6.58 -51.93 -0.34 0.74 16 15 N -0.71 -9.54 5.15 -50.93 -0.26 -9.81 16 16 C 0.27 3.59 6.69 -83.62 -0.56 3.03 16 17 C -0.25 -3.11 9.27 -39.24 -0.36 -3.47 16 18 C 0.15 1.85 11.17 -17.61 -0.20 1.65 16 19 N -0.53 -7.40 10.34 -10.46 -0.11 -7.51 16 20 C 0.22 2.89 7.27 -17.50 -0.13 2.77 16 21 Cl -0.05 -0.54 29.10 -51.86 -1.51 -2.05 16 22 C -0.24 -3.07 9.76 -39.21 -0.38 -3.45 16 23 C -0.12 -2.18 5.94 -25.05 -0.15 -2.33 16 24 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 25 H 0.07 1.68 7.37 -51.93 -0.38 1.30 16 26 H 0.05 1.07 8.04 -51.93 -0.42 0.65 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.89 7.92 -51.93 -0.41 0.48 16 29 H 0.40 4.98 8.37 -40.82 -0.34 4.64 16 30 H 0.14 1.62 6.40 -52.49 -0.34 1.29 16 31 H 0.16 1.41 8.06 -52.48 -0.42 0.99 16 32 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.06 1.12 7.63 -51.93 -0.40 0.72 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 298.31 15.07 4.50 4.50 Total: -1.00 -27.35 298.31 -8.95 -36.30 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -4.28 Total: 2.68 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -2.93 Total: -15.85 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.30 Total: -41.05 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.51 Total: -2.05 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.35 -8.95 -36.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294934781.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.895 kcal (2) G-P(sol) polarization free energy of solvation -27.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds