Wall clock time and date at job start Mon Mar 30 2020 08:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86790 * 120.00146 * 2 1 4 4 H 1.48497 * 109.47542 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47370 * 300.00593 * 3 2 1 6 6 H 1.48507 * 109.47108 * 60.00212 * 3 2 1 7 7 C 1.37875 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99818 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00324 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.67474 * 61.78356 * 9 7 2 11 11 C 1.54886 * 110.75487 * 298.54567 * 9 7 2 12 12 C 1.54268 * 104.19503 * 203.74446 * 11 9 7 13 13 C 1.53869 * 106.60150 * 23.61168 * 12 11 9 14 14 H 1.09004 * 110.03350 * 240.67176 * 13 12 11 15 15 N 1.46499 * 110.03382 * 119.28455 * 13 12 11 16 16 C 1.39173 * 119.99960 * 86.73293 * 15 13 12 17 17 C 1.39533 * 120.85342 * 359.44279 * 16 15 13 18 18 C 1.37844 * 119.09316 * 179.71002 * 17 16 15 19 19 N 1.32028 * 120.86112 * 0.58088 * 18 17 16 20 20 C 1.32073 * 121.89203 * 359.71338 * 19 18 17 21 21 Cl 1.73599 * 119.59693 * 180.02562 * 20 19 18 22 22 C 1.38087 * 120.80911 * 359.97438 * 20 19 18 23 23 C 1.54267 * 106.59798 * 0.02562 * 13 12 11 24 24 H 0.96997 * 120.00574 * 359.97438 * 1 2 3 25 25 H 1.08998 * 110.48734 * 85.06308 * 11 9 7 26 26 H 1.08998 * 110.60234 * 322.47854 * 11 9 7 27 27 H 1.09004 * 110.03203 * 264.32231 * 12 11 9 28 28 H 1.09000 * 110.03396 * 142.90028 * 12 11 9 29 29 H 0.97001 * 119.99790 * 266.45020 * 15 13 12 30 30 H 1.07999 * 120.45743 * 359.97438 * 17 16 15 31 31 H 1.08004 * 119.56970 * 180.29885 * 18 17 16 32 32 H 1.07996 * 120.47427 * 180.02562 * 22 20 19 33 33 H 1.08998 * 110.48824 * 95.06689 * 23 13 12 34 34 H 1.08999 * 110.48755 * 217.71673 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6406 -2.5912 -0.8989 11 6 0.3776 -2.6287 1.2721 12 6 0.1831 -4.1494 1.4442 13 6 1.3581 -4.8278 0.7184 14 1 0.9840 -5.4665 -0.0819 15 7 2.1435 -5.6209 1.6673 16 6 1.7813 -6.9363 1.9421 17 6 0.6668 -7.5138 1.3326 18 6 0.3446 -8.8215 1.6265 19 7 1.0681 -9.5218 2.4805 20 6 2.1263 -9.0098 3.0825 21 17 3.0354 -9.9848 4.1946 22 6 2.5192 -7.7089 2.8374 23 6 2.2261 -3.6958 0.1312 24 1 -0.4851 0.8400 0.0004 25 1 -0.5833 -2.1352 1.1272 26 1 0.8940 -2.2101 2.1358 27 1 -0.7612 -4.4582 0.9957 28 1 0.1971 -4.4102 2.5024 29 1 2.9183 -5.2305 2.1010 30 1 0.0673 -6.9455 0.6369 31 1 -0.5136 -9.2777 1.1555 32 1 3.3856 -7.2959 3.3323 33 1 3.0429 -3.4502 0.8098 34 1 2.6139 -3.9806 -0.8469 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294934781.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:15:32 Heat of formation + Delta-G solvation = -2.330265 kcal Electronic energy + Delta-G solvation = -17335.059505 eV Core-core repulsion = 14485.016415 eV Total energy + Delta-G solvation = -2850.043090 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.24007 -39.36928 -37.59127 -36.24995 -34.26035 -31.98447 -31.31639 -29.93378 -28.27552 -25.93599 -24.49324 -23.50486 -21.22912 -20.90964 -18.91849 -18.48978 -17.55958 -16.75465 -16.54328 -16.44757 -15.99400 -15.43994 -15.38662 -14.71331 -14.54522 -14.03881 -13.64301 -13.46599 -13.01182 -12.85646 -12.61131 -12.54200 -12.38889 -12.26563 -11.97876 -11.75293 -11.43816 -11.35642 -11.05837 -10.79864 -10.54567 -10.46071 -9.95039 -8.81736 -8.11388 -6.20861 0.07232 0.49921 0.85716 1.39779 1.43141 1.52745 2.34190 2.44750 2.81254 3.19910 3.67826 3.87658 4.01230 4.02166 4.07485 4.16303 4.33998 4.59044 4.72920 4.74590 4.86402 4.91664 5.03509 5.09015 5.14331 5.17037 5.34653 5.42899 5.57131 5.67055 5.93142 6.01109 6.22796 6.38214 6.66778 6.90041 6.92866 7.47010 8.96622 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.045164 B = 0.003560 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.817564 B = 7863.963297 C = 8212.458777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.531 4.531 8 H 0.054 0.946 9 C 0.040 3.960 10 H 0.007 0.993 11 C -0.092 4.092 12 C -0.129 4.129 13 C 0.155 3.845 14 H 0.093 0.907 15 N -0.712 5.712 16 C 0.264 3.736 17 C -0.253 4.253 18 C 0.154 3.846 19 N -0.552 5.552 20 C 0.201 3.799 21 Cl -0.039 7.039 22 C -0.242 4.242 23 C -0.111 4.111 24 H 0.259 0.741 25 H 0.038 0.962 26 H 0.028 0.972 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.408 0.592 30 H 0.151 0.849 31 H 0.189 0.811 32 H 0.152 0.848 33 H 0.063 0.937 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 -15.383 4.265 16.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.569 4.569 8 H 0.072 0.928 9 C 0.022 3.978 10 H 0.025 0.975 11 C -0.131 4.131 12 C -0.168 4.168 13 C 0.051 3.949 14 H 0.111 0.889 15 N -0.338 5.338 16 C 0.148 3.852 17 C -0.278 4.278 18 C -0.001 4.001 19 N -0.268 5.268 20 C 0.038 3.962 21 Cl -0.011 7.011 22 C -0.269 4.269 23 C -0.149 4.149 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.245 0.755 30 H 0.168 0.832 31 H 0.206 0.794 32 H 0.170 0.830 33 H 0.082 0.918 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.559 -16.085 4.398 16.871 hybrid contribution 0.813 2.204 0.118 2.352 sum 3.372 -13.882 4.516 14.982 Atomic orbital electron populations 1.70075 1.07102 1.27002 1.51463 1.25707 0.95614 1.02243 0.95007 0.85649 0.79243 0.80205 0.77411 1.19081 1.20878 1.20961 1.21538 0.93011 0.92027 1.50319 0.92808 1.19542 0.92819 0.92031 0.93449 0.97508 1.22067 0.99525 0.93299 0.98198 1.22644 0.98163 0.95906 1.00066 1.21658 0.91284 0.91637 0.90362 0.88936 1.45033 1.32602 1.09033 1.47131 1.18098 0.91712 0.84998 0.90354 1.21963 1.00406 0.98228 1.07232 1.22785 0.96636 0.89996 0.90667 1.67054 1.07609 1.39679 1.12449 1.21348 0.92378 0.89124 0.93319 1.98381 1.71213 1.71934 1.59525 1.21252 1.05767 0.93942 1.05891 1.22561 0.98078 0.94308 0.99920 0.93207 0.94279 0.95324 0.91323 0.92058 0.75521 0.83157 0.79376 0.83022 0.91829 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.53 12.02 21.45 0.26 -51.28 16 2 C 0.01 0.71 5.33 84.65 0.45 1.16 16 3 Si 0.95 42.34 29.54 68.60 2.03 44.36 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.53 -27.68 8.54 25.60 0.22 -27.46 16 8 H 0.05 2.75 7.78 -2.91 -0.02 2.73 16 9 C 0.04 1.85 2.83 -10.24 -0.03 1.82 16 10 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 11 C -0.09 -4.01 5.56 31.67 0.18 -3.83 16 12 C -0.13 -4.16 6.59 31.32 0.21 -3.96 16 13 C 0.16 4.40 2.93 45.71 0.13 4.53 16 14 H 0.09 2.37 6.58 -2.38 -0.02 2.35 16 15 N -0.71 -17.23 5.15 -315.04 -1.62 -18.85 16 16 C 0.26 6.24 6.69 38.57 0.26 6.50 16 17 C -0.25 -5.55 9.27 22.49 0.21 -5.35 16 18 C 0.15 3.27 11.17 84.57 0.94 4.21 16 19 N -0.55 -14.17 10.34 -187.00 -1.93 -16.10 16 20 C 0.20 5.01 7.27 84.62 0.61 5.62 16 21 Cl -0.04 -0.87 29.10 -2.72 -0.08 -0.95 16 22 C -0.24 -5.56 9.76 22.51 0.22 -5.34 16 23 C -0.11 -3.85 5.94 31.68 0.19 -3.66 16 24 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 25 H 0.04 1.91 7.37 -2.39 -0.02 1.89 16 26 H 0.03 1.30 8.04 -2.39 -0.02 1.28 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.06 1.90 7.92 -2.39 -0.02 1.88 16 29 H 0.41 9.12 8.37 -92.71 -0.78 8.34 16 30 H 0.15 2.96 6.40 -2.91 -0.02 2.95 16 31 H 0.19 2.72 8.06 -2.91 -0.02 2.69 16 32 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 33 H 0.06 2.19 7.63 -2.39 -0.02 2.17 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -58.71 298.31 2.58 -56.13 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.34 Total: 12.44 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 3.59 Total: -25.76 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -3.30 Total: -86.23 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -58.71 2.58 -56.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294934781.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.800 kcal (2) G-P(sol) polarization free energy of solvation -58.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds