Wall clock time and date at job start Mon Mar 30 2020 08:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99692 * 2 1 4 4 H 1.48489 * 109.47627 * 239.99995 * 3 2 1 5 5 H 1.48497 * 109.47384 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47025 * 119.99987 * 3 2 1 7 7 C 1.37870 * 120.00796 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.01018 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99530 * 359.97438 * 7 2 1 10 10 H 1.09006 * 110.43428 * 57.46131 * 9 7 2 11 11 C 1.55238 * 110.58096 * 294.87729 * 9 7 2 12 12 C 1.54894 * 102.58338 * 203.33573 * 11 9 7 13 13 C 1.54266 * 104.31305 * 37.93170 * 12 11 9 14 14 H 1.08995 * 110.03255 * 217.03136 * 13 12 11 15 15 N 1.46500 * 110.03161 * 95.60564 * 13 12 11 16 16 C 1.39076 * 119.99878 * 86.45192 * 15 13 12 17 17 N 1.32392 * 119.70942 * 359.73024 * 16 15 13 18 18 C 1.31967 * 121.62928 * 179.71047 * 17 16 15 19 19 C 1.38046 * 120.88091 * 0.56503 * 18 17 16 20 20 C 1.38849 * 119.33613 * 359.72034 * 19 18 17 21 21 C 1.38422 * 118.49313 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.45872 * 179.97438 * 21 20 19 23 23 C 1.53869 * 106.60031 * 336.32486 * 13 12 11 24 24 H 0.97003 * 120.00123 * 359.97438 * 1 2 3 25 25 H 1.08996 * 110.89448 * 85.05138 * 11 9 7 26 26 H 1.08993 * 110.76342 * 321.56803 * 11 9 7 27 27 H 1.09002 * 110.48891 * 279.18596 * 12 11 9 28 28 H 1.08998 * 110.48494 * 156.67683 * 12 11 9 29 29 H 0.96998 * 119.99985 * 266.45205 * 15 13 12 30 30 H 1.08002 * 119.55578 * 180.26858 * 18 17 16 31 31 H 1.08003 * 120.33486 * 179.74750 * 19 18 17 32 32 H 1.08000 * 120.75391 * 179.97438 * 20 19 18 33 33 H 1.08999 * 110.04012 * 119.28327 * 23 13 12 34 34 H 1.09006 * 110.02998 * 240.67078 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6967 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.5848 -2.5538 -0.8614 11 6 0.4494 -2.6664 1.3182 12 6 0.2736 -4.2023 1.4138 13 6 1.6112 -4.7721 0.8980 14 1 1.4329 -5.6794 0.3211 15 7 2.5017 -5.0604 2.0250 16 6 2.4244 -6.2867 2.6763 17 7 1.5402 -7.1874 2.2765 18 6 1.4381 -8.3650 2.8634 19 6 2.2482 -8.6974 3.9306 20 6 3.1853 -7.7792 4.3852 21 6 3.2731 -6.5541 3.7468 22 17 4.4261 -5.3680 4.2734 23 6 2.2328 -3.6892 -0.0011 24 1 -0.4850 0.8401 0.0004 25 1 -0.5188 -2.1703 1.2501 26 1 1.0191 -2.2891 2.1673 27 1 -0.5507 -4.5321 0.7813 28 1 0.1040 -4.5033 2.4476 29 1 3.1452 -4.3959 2.3170 30 1 0.7078 -9.0763 2.5069 31 1 2.1543 -9.6621 4.4070 32 1 3.8304 -8.0151 5.2186 33 1 3.1970 -3.3780 0.4009 34 1 2.3568 -4.0712 -1.0145 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295090242.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:38 Heat of formation + Delta-G solvation = 2.415540 kcal Electronic energy + Delta-G solvation = -17678.030495 eV Core-core repulsion = 14828.193199 eV Total energy + Delta-G solvation = -2849.837296 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.22748 -39.23423 -37.51281 -35.80266 -34.08424 -33.04085 -30.71400 -29.90618 -28.23106 -25.87089 -24.38400 -23.63070 -21.16536 -20.82703 -18.87058 -18.50106 -17.45625 -17.23420 -16.64170 -16.25259 -15.84570 -15.41538 -15.25512 -14.59242 -14.12513 -14.07210 -13.56423 -13.26923 -13.03294 -12.94418 -12.73927 -12.67847 -12.41838 -12.09661 -12.07096 -11.67707 -11.43958 -11.11545 -11.02606 -10.83274 -10.46510 -10.43537 -10.37196 -8.60212 -8.10959 -6.20433 0.18168 0.48266 1.18898 1.41474 1.42199 1.49707 2.25739 2.43939 2.89160 3.19914 3.62452 3.86154 3.99567 4.07187 4.15948 4.26824 4.33227 4.61437 4.71490 4.82327 4.95611 4.98736 5.08820 5.14751 5.17418 5.22082 5.32766 5.44176 5.64973 5.67494 5.87727 5.99090 6.24272 6.38187 6.39509 6.89950 7.23996 7.46829 8.97699 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.028739 B = 0.004916 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.046353 B = 5693.798724 C = 6359.410402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.013 3.987 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.531 4.531 8 H 0.054 0.946 9 C 0.042 3.958 10 H 0.004 0.996 11 C -0.091 4.091 12 C -0.119 4.119 13 C 0.168 3.832 14 H 0.086 0.914 15 N -0.708 5.708 16 C 0.401 3.599 17 N -0.554 5.554 18 C 0.145 3.855 19 C -0.222 4.222 20 C -0.024 4.024 21 C -0.180 4.180 22 Cl -0.070 7.070 23 C -0.115 4.115 24 H 0.259 0.741 25 H 0.036 0.964 26 H 0.030 0.970 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.407 0.593 30 H 0.188 0.812 31 H 0.174 0.826 32 H 0.164 0.836 33 H 0.059 0.941 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.421 -17.718 8.792 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.072 0.928 9 C 0.023 3.977 10 H 0.022 0.978 11 C -0.129 4.129 12 C -0.158 4.158 13 C 0.063 3.937 14 H 0.104 0.896 15 N -0.340 5.340 16 C 0.163 3.837 17 N -0.273 5.273 18 C -0.013 4.013 19 C -0.244 4.244 20 C -0.050 4.050 21 C -0.214 4.214 22 Cl -0.042 7.042 23 C -0.153 4.153 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.245 0.755 30 H 0.205 0.795 31 H 0.191 0.809 32 H 0.182 0.818 33 H 0.077 0.923 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.715 -17.220 7.958 19.547 hybrid contribution 1.038 1.574 0.718 2.017 sum 5.753 -15.646 8.676 18.793 Atomic orbital electron populations 1.70080 1.07230 1.27168 1.51360 1.25732 0.95600 1.02305 0.94901 0.85736 0.78456 0.79398 0.78817 1.19559 1.21143 1.19774 1.21533 0.92886 0.91966 1.50542 0.92803 1.19476 0.92885 0.92062 0.93265 0.97803 1.22273 0.99073 0.93271 0.98274 1.22687 0.97232 0.95997 0.99846 1.21392 0.88762 0.97461 0.86091 0.89584 1.45097 1.40768 1.13638 1.34496 1.18375 0.89570 0.87429 0.88285 1.67445 1.22110 1.04362 1.33351 1.23178 0.96144 0.91044 0.90972 1.22167 0.98906 1.02581 1.00775 1.21624 0.96457 0.89473 0.97415 1.21408 1.01327 0.95706 1.02991 1.98345 1.58635 1.57481 1.89743 1.22456 0.99226 0.95105 0.98499 0.93169 0.94474 0.95135 0.91580 0.93004 0.75482 0.79491 0.80869 0.81849 0.92255 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.09 12.30 21.44 0.26 -53.82 16 2 C 0.01 0.75 5.35 84.65 0.45 1.21 16 3 Si 0.95 44.03 29.54 68.60 2.03 46.05 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.53 -29.32 8.47 25.60 0.22 -29.10 16 8 H 0.05 2.90 7.54 -2.91 -0.02 2.87 16 9 C 0.04 2.10 2.72 -10.34 -0.03 2.07 16 10 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 11 C -0.09 -4.34 5.77 32.01 0.18 -4.16 16 12 C -0.12 -4.64 6.53 31.67 0.21 -4.44 16 13 C 0.17 6.05 3.24 45.71 0.15 6.20 16 14 H 0.09 2.99 7.57 -2.39 -0.02 2.97 16 15 N -0.71 -23.50 5.15 -321.01 -1.65 -25.15 16 16 C 0.40 12.01 7.48 133.06 0.99 13.01 16 17 N -0.55 -15.66 9.22 -193.14 -1.78 -17.44 16 18 C 0.14 2.85 11.17 84.63 0.95 3.80 16 19 C -0.22 -3.47 10.10 22.37 0.23 -3.25 16 20 C -0.02 -0.44 9.97 22.46 0.22 -0.22 16 21 C -0.18 -4.61 6.36 22.55 0.14 -4.46 16 22 Cl -0.07 -1.78 27.62 -2.72 -0.08 -1.86 16 23 C -0.11 -4.66 6.13 31.32 0.19 -4.46 16 24 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 25 H 0.04 1.95 7.57 -2.39 -0.02 1.94 16 26 H 0.03 1.51 8.06 -2.39 -0.02 1.49 16 27 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.05 1.98 8.04 -2.39 -0.02 1.97 16 29 H 0.41 13.62 6.95 -92.71 -0.64 12.97 16 30 H 0.19 2.37 8.06 -2.91 -0.02 2.35 16 31 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 33 H 0.06 2.40 7.12 -2.39 -0.02 2.38 16 34 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 Total: -1.00 -63.21 298.22 3.15 -60.05 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.46 Total: 15.97 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 3.91 Total: -23.81 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -3.17 Total: -96.41 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.08 Total: -1.86 kcal Total: -63.21 3.15 -60.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295090242.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.470 kcal (2) G-P(sol) polarization free energy of solvation -63.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds