Wall clock time and date at job start Mon Mar 30 2020 08:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99892 * 2 1 4 4 H 1.48507 * 109.46914 * 269.99769 * 3 2 1 5 5 H 1.48500 * 109.47259 * 29.99700 * 3 2 1 6 6 H 1.48494 * 109.47474 * 149.99561 * 3 2 1 7 7 C 1.37877 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99509 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00375 * 180.02562 * 7 2 1 10 10 H 1.09001 * 110.53780 * 57.39327 * 9 7 2 11 11 C 1.54895 * 110.48813 * 294.78355 * 9 7 2 12 12 C 1.54961 * 102.77671 * 203.40309 * 11 9 7 13 13 C 1.54270 * 104.16191 * 37.88526 * 12 11 9 14 14 H 1.09002 * 110.03399 * 217.13605 * 13 12 11 15 15 N 1.46501 * 110.03162 * 95.75208 * 13 12 11 16 16 C 1.39006 * 119.99536 * 87.09462 * 15 13 12 17 17 C 1.39105 * 119.69840 * 359.72517 * 16 15 13 18 18 C 1.38340 * 119.12192 * 179.75056 * 17 16 15 19 19 C 1.38812 * 118.52535 * 0.51726 * 18 17 16 20 20 C 1.38206 * 119.31763 * 359.72455 * 19 18 17 21 21 Cl 1.73595 * 119.59008 * 180.02562 * 20 19 18 22 22 N 1.32066 * 120.81821 * 0.02562 * 20 19 18 23 23 C 1.53869 * 106.63967 * 336.44607 * 13 12 11 24 24 H 0.96990 * 120.00397 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.75082 * 321.68845 * 11 9 7 26 26 H 1.08991 * 110.75596 * 84.87535 * 11 9 7 27 27 H 1.08997 * 110.47708 * 279.23123 * 12 11 9 28 28 H 1.09002 * 110.53308 * 156.56515 * 12 11 9 29 29 H 0.96992 * 120.00180 * 267.09169 * 15 13 12 30 30 H 1.07994 * 120.43726 * 359.97438 * 17 16 15 31 31 H 1.08000 * 120.73266 * 180.24016 * 18 17 16 32 32 H 1.08000 * 120.34503 * 179.74651 * 19 18 17 33 33 H 1.08999 * 110.03405 * 119.26051 * 23 13 12 34 34 H 1.09001 * 110.03705 * 240.64196 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 1 3.8936 -0.6438 0.8610 11 6 4.0542 -0.5861 -1.3161 12 6 5.4734 -1.2000 -1.4178 13 6 5.2985 -2.6426 -0.9000 14 1 6.1746 -2.9415 -0.3243 15 7 5.1014 -3.5594 -2.0255 16 6 6.2006 -4.1167 -2.6686 17 6 7.4849 -3.7951 -2.2418 18 6 8.5701 -4.3606 -2.8870 19 6 8.3344 -5.2237 -3.9484 20 6 7.0322 -5.4955 -4.3232 21 17 6.7292 -6.5743 -5.6491 22 7 6.0155 -4.9446 -3.6853 23 6 4.0516 -2.6391 0.0015 24 1 -0.4850 0.8399 -0.0004 25 1 3.4405 -0.8910 -2.1638 26 1 4.1041 0.5006 -1.2483 27 1 6.1726 -0.6506 -0.7875 28 1 5.8145 -1.2051 -2.4531 29 1 4.2040 -3.7775 -2.3220 30 1 7.6327 -3.1158 -1.4155 31 1 9.5784 -4.1321 -2.5747 32 1 9.1600 -5.6784 -4.4756 33 1 3.2994 -3.3188 -0.3989 34 1 4.3222 -2.9370 1.0145 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295091957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:39 Heat of formation + Delta-G solvation = 24.765637 kcal Electronic energy + Delta-G solvation = -17517.941329 eV Core-core repulsion = 14669.073206 eV Total energy + Delta-G solvation = -2848.868123 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33868 -38.15418 -36.66872 -34.44008 -32.63445 -32.12115 -29.60861 -28.57769 -27.31821 -24.13044 -23.26957 -22.62541 -19.91800 -19.32398 -17.83920 -17.12020 -16.73569 -15.80492 -15.44964 -14.91079 -14.72070 -14.42940 -13.96500 -13.31873 -12.96999 -12.68770 -12.56904 -12.24388 -12.04808 -11.48489 -11.36995 -11.21072 -11.01209 -10.59831 -10.33220 -10.27390 -9.99171 -9.84046 -9.61965 -9.51822 -9.48395 -9.08237 -8.58479 -7.66174 -6.11324 -4.10885 1.04467 1.33894 1.73945 3.25283 3.30256 3.33999 3.35357 3.74203 4.37921 4.60347 4.92094 5.04355 5.06373 5.13273 5.19074 5.27047 5.31184 5.48524 5.80523 5.89646 6.05957 6.12889 6.15959 6.27554 6.33558 6.40526 6.53196 6.67511 6.81025 7.03190 7.12081 7.43270 7.64565 7.71918 8.07544 8.46964 8.91883 9.51117 11.01891 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.035390 B = 0.004127 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.992179 B = 6783.269130 C = 7137.907666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.512 4.512 8 H 0.073 0.927 9 C 0.012 3.988 10 H 0.035 0.965 11 C -0.127 4.127 12 C -0.140 4.140 13 C 0.146 3.854 14 H 0.076 0.924 15 N -0.701 5.701 16 C 0.430 3.570 17 C -0.240 4.240 18 C -0.022 4.022 19 C -0.230 4.230 20 C 0.230 3.770 21 Cl -0.043 7.043 22 N -0.548 5.548 23 C -0.112 4.112 24 H 0.264 0.736 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.409 0.591 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.072 0.928 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.087 -8.010 -5.703 20.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.189 1.189 7 C -0.550 4.550 8 H 0.091 0.909 9 C -0.007 4.007 10 H 0.053 0.947 11 C -0.165 4.165 12 C -0.179 4.179 13 C 0.042 3.958 14 H 0.094 0.906 15 N -0.331 5.331 16 C 0.193 3.807 17 C -0.266 4.266 18 C -0.048 4.048 19 C -0.255 4.255 20 C 0.064 3.936 21 Cl -0.015 7.015 22 N -0.268 5.268 23 C -0.150 4.150 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.246 0.754 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.090 0.910 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 17.053 -8.036 -5.880 19.747 hybrid contribution 0.706 0.987 -0.121 1.220 sum 17.759 -7.048 -6.001 20.027 Atomic orbital electron populations 1.69895 1.06327 1.26977 1.50709 1.25001 0.94634 0.99042 0.94377 0.86897 0.80071 0.83751 0.78338 1.20420 1.22115 1.18935 1.21042 0.88548 0.94425 1.50983 0.90860 1.19980 0.96713 0.90961 0.93016 0.94743 1.22933 0.93606 0.98545 1.01427 1.22916 0.99281 0.95384 1.00343 1.21880 0.99717 0.88357 0.85880 0.90618 1.45120 1.06225 1.47748 1.34043 1.18190 0.87757 0.87635 0.87161 1.21550 0.91514 1.07751 1.05775 1.21252 0.99125 0.92136 0.92272 1.21386 0.95578 1.05882 1.02642 1.21157 0.89261 0.92610 0.90585 1.98392 1.96900 1.61835 1.44363 1.66319 1.35569 1.14241 1.10700 1.22422 0.94512 1.00638 0.97454 0.92645 0.91421 0.93469 0.91544 0.92198 0.75373 0.84268 0.84257 0.84518 0.90974 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 2 C 0.07 2.00 5.46 -17.82 -0.10 1.90 16 3 Si 0.88 21.17 24.65 -169.99 -4.19 16.98 16 4 H -0.28 -6.58 7.10 56.52 0.40 -6.18 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.00 6.47 56.52 0.37 -5.64 16 7 C -0.51 -13.72 9.04 -34.44 -0.31 -14.03 16 8 H 0.07 2.13 7.79 -52.48 -0.41 1.73 16 9 C 0.01 0.27 2.28 -90.11 -0.21 0.06 16 10 H 0.03 0.76 7.06 -51.93 -0.37 0.39 16 11 C -0.13 -2.53 5.31 -24.70 -0.13 -2.66 16 12 C -0.14 -2.19 6.55 -25.03 -0.16 -2.35 16 13 C 0.15 2.16 2.89 -66.81 -0.19 1.97 16 14 H 0.08 0.96 6.45 -51.93 -0.34 0.63 16 15 N -0.70 -10.47 5.21 -52.85 -0.28 -10.75 16 16 C 0.43 6.24 7.65 -155.02 -1.19 5.06 16 17 C -0.24 -2.88 9.23 -39.22 -0.36 -3.24 16 18 C -0.02 -0.22 10.16 -39.33 -0.40 -0.62 16 19 C -0.23 -2.49 9.87 -39.38 -0.39 -2.88 16 20 C 0.23 3.06 7.27 -17.46 -0.13 2.94 16 21 Cl -0.04 -0.52 29.10 -51.86 -1.51 -2.03 16 22 N -0.55 -8.45 10.37 -9.55 -0.10 -8.55 16 23 C -0.11 -1.98 6.13 -25.62 -0.16 -2.14 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 25 H 0.07 1.43 8.05 -51.93 -0.42 1.01 16 26 H 0.05 0.97 5.27 -51.93 -0.27 0.69 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.91 8.04 -51.93 -0.42 0.49 16 29 H 0.41 6.43 8.43 -40.82 -0.34 6.09 16 30 H 0.14 1.47 6.23 -52.49 -0.33 1.14 16 31 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.07 1.35 7.12 -51.93 -0.37 0.98 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 290.96 15.07 4.38 4.38 Total: -1.00 -29.50 290.96 -8.76 -38.26 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -4.12 Total: 4.04 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -3.72 Total: -16.01 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.40 Total: -45.63 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.19 Total: 16.98 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.51 Total: -2.03 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.50 -8.76 -38.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295091957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.022 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds