Wall clock time and date at job start Mon Mar 30 2020 08:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99892 * 2 1 4 4 H 1.48507 * 109.46914 * 269.99769 * 3 2 1 5 5 H 1.48500 * 109.47259 * 29.99700 * 3 2 1 6 6 H 1.48494 * 109.47474 * 149.99561 * 3 2 1 7 7 C 1.37877 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99509 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00375 * 180.02562 * 7 2 1 10 10 H 1.09001 * 110.53780 * 57.39327 * 9 7 2 11 11 C 1.54895 * 110.48813 * 294.78355 * 9 7 2 12 12 C 1.54961 * 102.77671 * 203.40309 * 11 9 7 13 13 C 1.54270 * 104.16191 * 37.88526 * 12 11 9 14 14 H 1.09002 * 110.03399 * 217.13605 * 13 12 11 15 15 N 1.46501 * 110.03162 * 95.75208 * 13 12 11 16 16 C 1.39006 * 119.99536 * 87.09462 * 15 13 12 17 17 C 1.39105 * 119.69840 * 359.72517 * 16 15 13 18 18 C 1.38340 * 119.12192 * 179.75056 * 17 16 15 19 19 C 1.38812 * 118.52535 * 0.51726 * 18 17 16 20 20 C 1.38206 * 119.31763 * 359.72455 * 19 18 17 21 21 Cl 1.73595 * 119.59008 * 180.02562 * 20 19 18 22 22 N 1.32066 * 120.81821 * 0.02562 * 20 19 18 23 23 C 1.53869 * 106.63967 * 336.44607 * 13 12 11 24 24 H 0.96990 * 120.00397 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.75082 * 321.68845 * 11 9 7 26 26 H 1.08991 * 110.75596 * 84.87535 * 11 9 7 27 27 H 1.08997 * 110.47708 * 279.23123 * 12 11 9 28 28 H 1.09002 * 110.53308 * 156.56515 * 12 11 9 29 29 H 0.96992 * 120.00180 * 267.09169 * 15 13 12 30 30 H 1.07994 * 120.43726 * 359.97438 * 17 16 15 31 31 H 1.08000 * 120.73266 * 180.24016 * 18 17 16 32 32 H 1.08000 * 120.34503 * 179.74651 * 19 18 17 33 33 H 1.08999 * 110.03405 * 119.26051 * 23 13 12 34 34 H 1.09001 * 110.03705 * 240.64196 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 1 3.8936 -0.6438 0.8610 11 6 4.0542 -0.5861 -1.3161 12 6 5.4734 -1.2000 -1.4178 13 6 5.2985 -2.6426 -0.9000 14 1 6.1746 -2.9415 -0.3243 15 7 5.1014 -3.5594 -2.0255 16 6 6.2006 -4.1167 -2.6686 17 6 7.4849 -3.7951 -2.2418 18 6 8.5701 -4.3606 -2.8870 19 6 8.3344 -5.2237 -3.9484 20 6 7.0322 -5.4955 -4.3232 21 17 6.7292 -6.5743 -5.6491 22 7 6.0155 -4.9446 -3.6853 23 6 4.0516 -2.6391 0.0015 24 1 -0.4850 0.8399 -0.0004 25 1 3.4405 -0.8910 -2.1638 26 1 4.1041 0.5006 -1.2483 27 1 6.1726 -0.6506 -0.7875 28 1 5.8145 -1.2051 -2.4531 29 1 4.2040 -3.7775 -2.3220 30 1 7.6327 -3.1158 -1.4155 31 1 9.5784 -4.1321 -2.5747 32 1 9.1600 -5.6784 -4.4756 33 1 3.2994 -3.3188 -0.3989 34 1 4.3222 -2.9370 1.0145 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295091957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:39 Heat of formation + Delta-G solvation = 6.393102 kcal Electronic energy + Delta-G solvation = -17518.738022 eV Core-core repulsion = 14669.073206 eV Total energy + Delta-G solvation = -2849.664816 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.30354 -39.45507 -37.60908 -35.76169 -34.23643 -33.36907 -30.77516 -30.07306 -28.65203 -25.71390 -24.35854 -23.66301 -21.31767 -20.80676 -19.09282 -18.64674 -17.89576 -16.88445 -16.64225 -16.44672 -15.70915 -15.54135 -15.49314 -14.82184 -14.28894 -14.07206 -13.99946 -13.48717 -13.03152 -12.93392 -12.74337 -12.47413 -12.30131 -12.20634 -11.77282 -11.65408 -11.50073 -11.28245 -11.10873 -11.02173 -10.68925 -10.56654 -10.50192 -8.66748 -8.28015 -6.31293 0.14472 0.47366 0.83318 1.34277 1.36816 1.47466 2.25045 2.35425 2.81911 3.07962 3.73879 3.85185 3.88258 4.02936 4.11931 4.27887 4.31289 4.53381 4.64327 4.66455 4.73662 4.94059 5.00177 5.01743 5.05438 5.14092 5.25783 5.31785 5.47917 5.58205 5.66357 5.77582 6.06376 6.33017 6.55264 6.76389 7.05987 7.34286 8.89154 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.035390 B = 0.004127 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.992179 B = 6783.269130 C = 7137.907666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.008 3.992 3 Si 0.945 3.055 4 H -0.272 1.272 5 H -0.299 1.299 6 H -0.234 1.234 7 C -0.513 4.513 8 H 0.029 0.971 9 C 0.006 3.994 10 H 0.041 0.959 11 C -0.128 4.128 12 C -0.127 4.127 13 C 0.160 3.840 14 H 0.111 0.889 15 N -0.714 5.714 16 C 0.408 3.592 17 C -0.240 4.240 18 C -0.012 4.012 19 C -0.219 4.219 20 C 0.203 3.797 21 Cl -0.045 7.045 22 N -0.584 5.584 23 C -0.109 4.109 24 H 0.263 0.737 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.398 0.602 30 H 0.160 0.840 31 H 0.183 0.817 32 H 0.164 0.836 33 H 0.049 0.951 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.587 -7.438 -5.453 24.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.189 4.189 3 Si 0.770 3.230 4 H -0.197 1.197 5 H -0.226 1.226 6 H -0.158 1.158 7 C -0.551 4.551 8 H 0.047 0.953 9 C -0.013 4.013 10 H 0.059 0.941 11 C -0.166 4.166 12 C -0.166 4.166 13 C 0.055 3.945 14 H 0.128 0.872 15 N -0.344 5.344 16 C 0.172 3.828 17 C -0.265 4.265 18 C -0.038 4.038 19 C -0.243 4.243 20 C 0.039 3.961 21 Cl -0.016 7.016 22 N -0.305 5.305 23 C -0.147 4.147 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.233 0.767 30 H 0.177 0.823 31 H 0.200 0.800 32 H 0.182 0.818 33 H 0.068 0.932 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 21.609 -7.498 -5.644 23.559 hybrid contribution -0.718 0.666 -0.240 1.009 sum 20.890 -6.831 -5.884 22.753 Atomic orbital electron populations 1.70068 1.08458 1.27904 1.53272 1.25927 0.95351 1.03240 0.94336 0.85861 0.79755 0.78543 0.78841 1.19728 1.22590 1.15751 1.21435 0.91757 0.92602 1.49343 0.95310 1.19972 0.93037 0.94055 0.94217 0.94137 1.22783 0.96310 0.98407 0.99094 1.22868 0.96581 0.95569 1.01583 1.21741 0.98976 0.88183 0.85562 0.87154 1.45085 1.06091 1.48557 1.34639 1.18438 0.88473 0.88302 0.87592 1.21843 0.90681 1.07781 1.06167 1.21767 1.00579 0.90487 0.90941 1.21797 0.95114 1.05011 1.02425 1.21509 0.90056 0.93412 0.91138 1.98385 1.97006 1.61868 1.44389 1.66184 1.37235 1.15337 1.11781 1.22315 0.95519 0.97526 0.99335 0.92775 0.93998 0.93741 0.88584 0.91536 0.76704 0.82290 0.79985 0.81835 0.93214 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.15 13.96 21.45 0.30 -59.85 16 2 C 0.01 0.45 5.46 84.65 0.46 0.91 16 3 Si 0.94 43.68 24.65 68.60 1.69 45.37 16 4 H -0.27 -12.18 7.10 99.48 0.71 -11.48 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.23 -9.62 6.47 99.48 0.64 -8.97 16 7 C -0.51 -28.53 9.04 25.60 0.23 -28.30 16 8 H 0.03 1.79 7.79 -2.91 -0.02 1.77 16 9 C 0.01 0.26 2.28 -10.46 -0.02 0.24 16 10 H 0.04 1.69 7.06 -2.39 -0.02 1.67 16 11 C -0.13 -4.90 5.31 31.91 0.17 -4.73 16 12 C -0.13 -3.51 6.55 31.70 0.21 -3.31 16 13 C 0.16 4.27 2.89 45.72 0.13 4.40 16 14 H 0.11 2.25 6.45 -2.39 -0.02 2.23 16 15 N -0.71 -20.55 5.21 -321.12 -1.67 -22.22 16 16 C 0.41 11.07 7.65 133.05 1.02 12.09 16 17 C -0.24 -4.75 9.23 22.50 0.21 -4.54 16 18 C -0.01 -0.19 10.16 22.43 0.23 0.04 16 19 C -0.22 -3.96 9.87 22.40 0.22 -3.74 16 20 C 0.20 5.09 7.27 84.65 0.62 5.71 16 21 Cl -0.04 -1.04 29.10 -2.72 -0.08 -1.12 16 22 N -0.58 -17.56 10.37 -184.13 -1.91 -19.47 16 23 C -0.11 -3.74 6.13 31.32 0.19 -3.55 16 24 H 0.26 15.59 8.31 -92.72 -0.77 14.82 16 25 H 0.04 1.78 8.05 -2.39 -0.02 1.76 16 26 H 0.04 1.71 5.27 -2.39 -0.01 1.69 16 27 H 0.10 2.14 8.14 -2.39 -0.02 2.13 16 28 H 0.07 1.79 8.04 -2.39 -0.02 1.77 16 29 H 0.40 12.88 8.43 -92.71 -0.78 12.10 16 30 H 0.16 2.45 6.23 -2.91 -0.02 2.43 16 31 H 0.18 1.20 8.06 -2.91 -0.02 1.17 16 32 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 33 H 0.05 1.92 7.12 -2.39 -0.02 1.90 16 34 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -68.16 290.96 2.27 -65.90 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.28 Total: 16.16 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 3.66 Total: -24.77 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -3.28 Total: -101.54 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.69 Total: 45.37 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -68.16 2.27 -65.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295091957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.289 kcal (2) G-P(sol) polarization free energy of solvation -68.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds