Wall clock time and date at job start Mon Mar 30 2020 08:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99817 * 2 1 4 4 H 1.48494 * 109.47079 * 269.99911 * 3 2 1 5 5 H 1.48505 * 109.47023 * 30.00112 * 3 2 1 6 6 H 1.48501 * 109.47190 * 149.99853 * 3 2 1 7 7 C 1.37877 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99536 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00018 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47102 * 180.02562 * 9 7 2 11 11 C 1.39010 * 110.99953 * 163.99726 * 10 9 7 12 12 N 1.32428 * 119.70720 * 54.01161 * 11 10 9 13 13 C 1.31943 * 121.61792 * 179.97438 * 12 11 10 14 14 C 1.38060 * 120.85958 * 0.02562 * 13 12 11 15 15 C 1.38836 * 119.32946 * 359.97274 * 14 13 12 16 16 C 1.38347 * 118.50303 * 359.75394 * 15 14 13 17 17 C 1.50698 * 120.45009 * 180.25715 * 16 15 14 18 18 Cl 1.80298 * 109.47443 * 265.58337 * 17 16 15 19 19 C 1.46897 * 111.00040 * 287.94821 * 10 9 7 20 20 C 1.53002 * 117.50006 * 238.50083 * 19 10 9 21 21 C 1.52997 * 117.50213 * 169.83985 * 19 10 9 22 22 H 0.96996 * 120.00335 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47454 * 59.99773 * 9 7 2 24 24 H 1.09011 * 109.47096 * 299.99793 * 9 7 2 25 25 H 1.08005 * 119.56483 * 180.02562 * 13 12 11 26 26 H 1.08004 * 120.33573 * 180.02562 * 14 13 12 27 27 H 1.07999 * 120.74820 * 180.02562 * 15 14 13 28 28 H 1.09001 * 109.47007 * 25.58323 * 17 16 15 29 29 H 1.08999 * 109.47242 * 145.58175 * 17 16 15 30 30 H 1.09008 * 115.54966 * 24.16405 * 19 10 9 31 31 H 1.09004 * 117.49807 * 359.97438 * 20 19 10 32 32 H 1.09001 * 117.50227 * 145.01680 * 20 19 10 33 33 H 1.09008 * 117.50044 * 214.98208 * 21 19 10 34 34 H 1.08999 * 117.49692 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0018 11 6 1.5811 -4.8048 0.3596 12 7 0.5048 -5.2050 -0.3000 13 6 -0.1174 -6.3272 0.0074 14 6 0.3354 -7.1291 1.0360 15 6 1.4609 -6.7453 1.7525 16 6 2.0955 -5.5666 1.4035 17 6 3.3241 -5.1112 2.1480 18 17 2.8436 -3.9736 3.4617 19 6 2.8701 -3.7417 -1.3023 20 6 2.7237 -5.0718 -2.0441 21 6 4.0606 -4.6978 -1.3993 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 -0.9924 -6.6221 -0.5529 26 1 -0.1802 -8.0462 1.2801 27 1 1.8352 -7.3555 2.5612 28 1 3.8272 -5.9754 2.5818 29 1 4.0001 -4.6054 1.4587 30 1 2.9049 -2.8321 -1.9021 31 1 2.1348 -5.8535 -1.5643 32 1 2.6626 -5.0374 -3.1319 33 1 4.8786 -4.4175 -2.0630 34 1 4.3512 -5.2330 -0.4953 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300349730.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:34 Heat of formation + Delta-G solvation = 69.704375 kcal Electronic energy + Delta-G solvation = -18358.266724 eV Core-core repulsion = 15511.347291 eV Total energy + Delta-G solvation = -2846.919433 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.52160 -37.39776 -35.58820 -33.85156 -33.00383 -32.40434 -30.28113 -27.02626 -26.14072 -23.23657 -22.29233 -22.00827 -21.67570 -19.88371 -16.76838 -16.37138 -16.14598 -15.79311 -15.19468 -14.40051 -14.31763 -13.91581 -13.27506 -13.22145 -12.97420 -12.69745 -12.42481 -12.05653 -11.89638 -11.47599 -11.08909 -10.87445 -10.76121 -10.28176 -10.13585 -10.06332 -9.91246 -9.71809 -9.51445 -9.28396 -9.08331 -8.49208 -8.39847 -7.51635 -5.98636 -4.00323 1.18985 1.46661 2.87467 3.34802 3.41094 3.45687 4.06564 4.13302 4.46074 4.62101 4.65140 4.88965 5.06221 5.09168 5.24693 5.35723 5.42631 5.44758 5.49423 5.60915 5.79873 5.93562 6.03240 6.21816 6.27436 6.32805 6.48817 6.58560 6.71080 7.22096 7.41510 7.82316 7.99041 8.12537 8.31652 8.51484 9.06292 9.62838 11.11942 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.017973 B = 0.007435 C = 0.006699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.516112 B = 3764.848598 C = 4178.569827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.506 4.506 8 H 0.066 0.934 9 C 0.210 3.790 10 N -0.460 5.460 11 C 0.341 3.659 12 N -0.499 5.499 13 C 0.112 3.888 14 C -0.194 4.194 15 C -0.060 4.060 16 C -0.143 4.143 17 C 0.026 3.974 18 Cl -0.168 7.168 19 C 0.059 3.941 20 C -0.213 4.213 21 C -0.188 4.188 22 H 0.261 0.739 23 H 0.011 0.989 24 H 0.029 0.971 25 H 0.150 0.850 26 H 0.131 0.869 27 H 0.132 0.868 28 H 0.088 0.912 29 H 0.112 0.888 30 H 0.130 0.870 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.839 -14.654 1.518 15.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.545 4.545 8 H 0.084 0.916 9 C 0.087 3.913 10 N -0.182 5.182 11 C 0.113 3.887 12 N -0.210 5.210 13 C -0.047 4.047 14 C -0.215 4.215 15 C -0.087 4.087 16 C -0.147 4.147 17 C -0.037 4.037 18 Cl -0.141 7.141 19 C -0.049 4.049 20 C -0.252 4.252 21 C -0.226 4.226 22 H 0.071 0.929 23 H 0.029 0.971 24 H 0.047 0.953 25 H 0.167 0.833 26 H 0.149 0.851 27 H 0.150 0.850 28 H 0.106 0.894 29 H 0.130 0.870 30 H 0.147 0.853 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.685 -13.766 1.309 14.601 hybrid contribution -0.079 0.215 0.216 0.315 sum 4.606 -13.551 1.526 14.394 Atomic orbital electron populations 1.69974 1.06043 1.26739 1.50754 1.24955 0.94817 0.99197 0.95460 0.86506 0.79864 0.83144 0.77965 1.20775 1.21343 1.19701 1.21101 0.93583 0.89508 1.50278 0.91629 1.19703 0.89135 0.85256 0.97162 1.60302 1.30802 1.00909 1.26159 1.20075 0.88012 0.90845 0.89788 1.68160 1.08741 1.15162 1.28966 1.22646 0.97863 0.89756 0.94439 1.21974 0.98574 1.02082 0.98823 1.21354 0.94344 0.95073 0.97880 1.20460 0.99660 0.96093 0.98529 1.22840 0.95169 0.94561 0.91128 1.98737 1.93752 1.67043 1.54583 1.22562 0.97971 0.93984 0.90399 1.23499 1.00447 1.01432 0.99784 1.23134 0.92106 1.05037 1.02343 0.92946 0.97129 0.95312 0.83255 0.85114 0.84993 0.89396 0.86980 0.85255 0.89211 0.89365 0.88914 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.12 8.56 -34.44 -0.29 -14.41 16 8 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.21 5.56 4.31 -4.98 -0.02 5.53 16 10 N -0.46 -9.84 3.67 -167.00 -0.61 -10.46 16 11 C 0.34 6.55 3.68 -155.00 -0.57 5.98 16 12 N -0.50 -9.52 8.18 -12.44 -0.10 -9.62 16 13 C 0.11 1.67 11.15 -17.57 -0.20 1.48 16 14 C -0.19 -2.43 10.10 -39.43 -0.40 -2.83 16 15 C -0.06 -0.78 9.83 -39.32 -0.39 -1.17 16 16 C -0.14 -2.29 5.29 -104.26 -0.55 -2.85 16 17 C 0.03 0.38 6.48 36.00 0.23 0.62 16 18 Cl -0.17 -2.92 29.13 -51.86 -1.51 -4.43 16 19 C 0.06 1.15 5.74 -67.71 -0.39 0.76 16 20 C -0.21 -3.53 9.33 -26.69 -0.25 -3.78 16 21 C -0.19 -2.90 10.22 -26.70 -0.27 -3.18 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 23 H 0.01 0.31 8.05 -51.93 -0.42 -0.11 16 24 H 0.03 0.85 7.97 -51.92 -0.41 0.44 16 25 H 0.15 1.80 8.06 -52.48 -0.42 1.37 16 26 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 27 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 28 H 0.09 0.96 8.07 -51.93 -0.42 0.54 16 29 H 0.11 1.73 6.44 -51.93 -0.33 1.39 16 30 H 0.13 2.69 7.56 -51.92 -0.39 2.30 16 31 H 0.09 1.56 5.63 -51.93 -0.29 1.26 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.09 1.26 8.14 -51.92 -0.42 0.84 16 34 H 0.09 1.27 6.92 -51.93 -0.36 0.91 16 LS Contribution 302.51 15.07 4.56 4.56 Total: -1.00 -31.22 302.51 -9.43 -40.65 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -4.29 Total: 1.01 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -3.19 Total: -12.31 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.02 Total: -46.27 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 17 Polarization: -2.92 SS G_CDS: -1.51 Total: -4.43 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.22 -9.43 -40.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300349730.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.359 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds