Wall clock time and date at job start Mon Mar 30 2020 07:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86796 * 120.00288 * 2 1 4 4 H 1.48498 * 109.47341 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47139 * 299.99833 * 3 2 1 6 6 H 1.48495 * 109.47194 * 60.00000 * 3 2 1 7 7 C 1.40276 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00024 * 179.97438 * 7 2 1 9 9 C 1.39715 * 120.00409 * 359.97438 * 7 2 1 10 10 N 1.33301 * 126.52621 * 359.97438 * 9 7 2 11 11 N 1.28524 * 109.76254 * 179.97438 * 10 9 7 12 12 C 1.32490 * 110.13448 * 0.02562 * 11 10 9 13 13 C 1.47303 * 126.28039 * 179.97438 * 12 11 10 14 14 C 1.40864 * 120.30356 * 179.97438 * 13 12 11 15 15 N 1.30727 * 121.50249 * 180.02562 * 14 13 12 16 16 C 1.33875 * 121.76946 * 0.02562 * 15 14 13 17 17 C 1.40472 * 120.79445 * 180.02562 * 16 15 14 18 18 C 1.36183 * 119.83486 * 180.02562 * 17 16 15 19 19 C 1.39332 * 121.09517 * 359.97438 * 18 17 16 20 20 C 1.36153 * 120.82170 * 0.28846 * 19 18 17 21 21 C 1.40586 * 119.61331 * 359.43379 * 20 19 18 22 22 C 1.39341 * 120.30645 * 0.02562 * 13 12 11 23 23 N 1.36982 * 107.43588 * 0.23506 * 12 11 10 24 24 H 0.97006 * 127.13901 * 179.72936 * 23 12 11 25 25 H 0.96999 * 119.99366 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.24817 * 0.04042 * 14 13 12 27 27 H 1.08003 * 120.08076 * 0.02562 * 17 16 15 28 28 H 1.07997 * 119.45071 * 179.97438 * 18 17 16 29 29 H 1.08007 * 119.58542 * 179.97438 * 19 18 17 30 30 H 1.08005 * 120.18637 * 179.76053 * 20 19 18 31 31 H 1.07999 * 121.02690 * 359.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8821 2.3963 -1.2125 6 1 1.8821 2.3964 1.2125 7 6 2.0080 -1.2149 -0.0005 8 1 3.0881 -1.2150 -0.0010 9 6 1.3094 -2.4248 -0.0005 10 7 -0.0149 -2.5763 0.0004 11 7 -0.3092 -3.8274 -0.0005 12 6 0.7972 -4.5562 -0.0015 13 6 0.8720 -6.0273 -0.0021 14 6 2.1227 -6.6755 -0.0037 15 7 2.2163 -7.9794 -0.0048 16 6 1.1316 -8.7640 -0.0050 17 6 1.2561 -10.1632 -0.0057 18 6 0.1394 -10.9427 -0.0064 19 6 -1.1336 -10.3763 -0.0059 20 6 -1.2956 -9.0244 -0.0106 21 6 -0.1648 -8.1892 -0.0040 22 6 -0.2937 -6.7906 -0.0022 23 7 1.8589 -3.6906 0.0042 24 1 2.8015 -3.9198 0.0086 25 1 -0.4849 0.8401 -0.0004 26 1 3.0248 -6.0816 -0.0038 27 1 2.2349 -10.6196 -0.0056 28 1 0.2423 -12.0177 -0.0073 29 1 -2.0026 -11.0176 -0.0069 30 1 -2.2872 -8.5963 -0.0141 31 1 -1.2664 -6.3213 -0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302653046.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:25 Heat of formation + Delta-G solvation = 110.907625 kcal Electronic energy + Delta-G solvation = -18143.997164 eV Core-core repulsion = 15197.756943 eV Total energy + Delta-G solvation = -2946.240220 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.89566 -40.25457 -36.87757 -33.97470 -33.28462 -32.14271 -30.90261 -29.98841 -28.56536 -25.76506 -24.18033 -23.35081 -21.91011 -20.96566 -20.27591 -18.28153 -17.50674 -17.00937 -16.22316 -15.86879 -15.02209 -14.41167 -14.38517 -14.22190 -13.81022 -13.71481 -13.41702 -12.98202 -12.70496 -11.70861 -11.69023 -11.54214 -11.41769 -11.25699 -11.24182 -10.48814 -10.40099 -9.92065 -9.66053 -9.40953 -9.24544 -8.81269 -8.58278 -8.25184 -7.37926 -6.83380 -4.75471 0.54266 0.90969 2.14364 2.76320 2.95327 2.98279 3.03287 3.58550 3.74509 4.17391 4.21424 4.42954 4.54534 4.78610 4.89880 5.09507 5.11906 5.18328 5.25596 5.29345 5.49636 5.59027 5.97080 6.09683 6.16819 6.30015 6.46138 6.56063 6.71487 6.74537 6.93385 6.97530 7.07648 7.28594 7.92020 8.01431 8.10549 8.52176 8.81689 10.08389 10.47265 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.057394 B = 0.003793 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.735678 B = 7379.337807 C = 7857.228453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.726 5.726 2 C 0.075 3.925 3 Si 0.925 3.075 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.438 4.438 8 H 0.089 0.911 9 C 0.345 3.655 10 N -0.326 5.326 11 N -0.254 5.254 12 C 0.075 3.925 13 C -0.006 4.006 14 C 0.132 3.868 15 N -0.473 5.473 16 C 0.103 3.897 17 C -0.088 4.088 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.096 4.096 21 C -0.084 4.084 22 C -0.063 4.063 23 N -0.641 5.641 24 H 0.406 0.594 25 H 0.283 0.717 26 H 0.151 0.849 27 H 0.130 0.870 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.889 -12.578 -0.009 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.348 5.348 2 C -0.152 4.152 3 Si 0.748 3.252 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.478 4.478 8 H 0.107 0.893 9 C 0.105 3.895 10 N -0.178 5.178 11 N -0.102 5.102 12 C -0.182 4.182 13 C -0.012 4.012 14 C -0.043 4.043 15 N -0.180 5.180 16 C -0.019 4.019 17 C -0.106 4.106 18 C -0.138 4.138 19 C -0.140 4.140 20 C -0.115 4.115 21 C -0.086 4.086 22 C -0.092 4.092 23 N -0.261 5.261 24 H 0.242 0.758 25 H 0.094 0.906 26 H 0.168 0.832 27 H 0.148 0.852 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.823 -12.535 -0.007 12.562 hybrid contribution 1.495 0.815 0.003 1.703 sum 2.319 -11.720 -0.004 11.948 Atomic orbital electron populations 1.69941 1.07245 1.29153 1.28465 1.25894 0.95001 1.01072 0.93199 0.85995 0.80321 0.80075 0.78816 1.18373 1.19558 1.19555 1.18328 0.94309 0.87282 1.47839 0.89281 1.21553 0.90025 0.84079 0.93881 1.75701 1.09063 1.04645 1.28361 1.74367 1.23415 1.00377 1.12061 1.21463 0.85918 0.90039 1.20794 1.18572 0.94085 0.89289 0.99240 1.22854 0.96311 0.90267 0.94877 1.67813 1.31751 1.05570 1.12839 1.18837 0.88200 0.93997 1.00848 1.20723 0.99255 0.91051 0.99592 1.20800 0.92301 0.99827 1.00860 1.20839 0.97342 0.95016 1.00785 1.21048 0.97733 0.93493 0.99254 1.18775 0.94295 0.93980 1.01578 1.21705 0.99143 0.91104 0.97278 1.43966 1.08180 1.06801 1.67181 0.75801 0.90589 0.83164 0.85249 0.85839 0.85920 0.85274 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -18.91 11.93 55.57 0.66 -18.25 16 2 C 0.08 1.82 5.50 -17.28 -0.10 1.73 16 3 Si 0.92 17.49 29.56 -169.99 -5.03 12.47 16 4 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 5 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 6 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.44 -10.93 9.44 -38.26 -0.36 -11.29 16 8 H 0.09 1.99 7.85 -52.48 -0.41 1.58 16 9 C 0.34 9.07 7.71 -155.01 -1.20 7.87 16 10 N -0.33 -9.35 10.49 31.21 0.33 -9.03 16 11 N -0.25 -6.72 11.94 32.55 0.39 -6.33 16 12 C 0.07 1.71 7.87 -153.53 -1.21 0.50 16 13 C -0.01 -0.12 5.89 -104.81 -0.62 -0.74 16 14 C 0.13 2.25 10.85 -17.03 -0.18 2.07 16 15 N -0.47 -8.02 10.30 -10.61 -0.11 -8.13 16 16 C 0.10 1.65 6.61 -84.77 -0.56 1.09 16 17 C -0.09 -1.15 9.97 -39.48 -0.39 -1.54 16 18 C -0.12 -1.28 9.94 -39.91 -0.40 -1.68 16 19 C -0.12 -1.33 9.96 -39.92 -0.40 -1.72 16 20 C -0.10 -1.24 9.77 -39.45 -0.39 -1.62 16 21 C -0.08 -1.34 5.74 -106.81 -0.61 -1.95 16 22 C -0.06 -1.13 9.58 -38.34 -0.37 -1.49 16 23 N -0.64 -14.24 6.23 -9.79 -0.06 -14.30 16 24 H 0.41 7.33 8.17 -40.82 -0.33 6.99 16 25 H 0.28 6.60 8.29 -40.82 -0.34 6.26 16 26 H 0.15 2.20 7.23 -52.48 -0.38 1.82 16 27 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 28 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 29 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 30 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 31 H 0.15 2.57 7.91 -52.49 -0.42 2.16 16 LS Contribution 282.30 15.07 4.25 4.25 Total: -1.00 -31.12 282.30 -8.70 -39.82 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -2.37 Total: 8.27 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -6.78 Total: -8.78 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 1.21 Total: -56.04 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.47 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.12 -8.70 -39.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302653046.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.732 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds