Wall clock time and date at job start Mon Mar 30 2020 07:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86796 * 120.00288 * 2 1 4 4 H 1.48498 * 109.47341 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47139 * 299.99833 * 3 2 1 6 6 H 1.48495 * 109.47194 * 60.00000 * 3 2 1 7 7 C 1.40276 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00024 * 179.97438 * 7 2 1 9 9 C 1.39715 * 120.00409 * 359.97438 * 7 2 1 10 10 N 1.33301 * 126.52621 * 359.97438 * 9 7 2 11 11 N 1.28524 * 109.76254 * 179.97438 * 10 9 7 12 12 C 1.32490 * 110.13448 * 0.02562 * 11 10 9 13 13 C 1.47303 * 126.28039 * 179.97438 * 12 11 10 14 14 C 1.40864 * 120.30356 * 179.97438 * 13 12 11 15 15 N 1.30727 * 121.50249 * 180.02562 * 14 13 12 16 16 C 1.33875 * 121.76946 * 0.02562 * 15 14 13 17 17 C 1.40472 * 120.79445 * 180.02562 * 16 15 14 18 18 C 1.36183 * 119.83486 * 180.02562 * 17 16 15 19 19 C 1.39332 * 121.09517 * 359.97438 * 18 17 16 20 20 C 1.36153 * 120.82170 * 0.28846 * 19 18 17 21 21 C 1.40586 * 119.61331 * 359.43379 * 20 19 18 22 22 C 1.39341 * 120.30645 * 0.02562 * 13 12 11 23 23 N 1.36982 * 107.43588 * 0.23506 * 12 11 10 24 24 H 0.97006 * 127.13901 * 179.72936 * 23 12 11 25 25 H 0.96999 * 119.99366 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.24817 * 0.04042 * 14 13 12 27 27 H 1.08003 * 120.08076 * 0.02562 * 17 16 15 28 28 H 1.07997 * 119.45071 * 179.97438 * 18 17 16 29 29 H 1.08007 * 119.58542 * 179.97438 * 19 18 17 30 30 H 1.08005 * 120.18637 * 179.76053 * 20 19 18 31 31 H 1.07999 * 121.02690 * 359.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8821 2.3963 -1.2125 6 1 1.8821 2.3964 1.2125 7 6 2.0080 -1.2149 -0.0005 8 1 3.0881 -1.2150 -0.0010 9 6 1.3094 -2.4248 -0.0005 10 7 -0.0149 -2.5763 0.0004 11 7 -0.3092 -3.8274 -0.0005 12 6 0.7972 -4.5562 -0.0015 13 6 0.8720 -6.0273 -0.0021 14 6 2.1227 -6.6755 -0.0037 15 7 2.2163 -7.9794 -0.0048 16 6 1.1316 -8.7640 -0.0050 17 6 1.2561 -10.1632 -0.0057 18 6 0.1394 -10.9427 -0.0064 19 6 -1.1336 -10.3763 -0.0059 20 6 -1.2956 -9.0244 -0.0106 21 6 -0.1648 -8.1892 -0.0040 22 6 -0.2937 -6.7906 -0.0022 23 7 1.8589 -3.6906 0.0042 24 1 2.8015 -3.9198 0.0086 25 1 -0.4849 0.8401 -0.0004 26 1 3.0248 -6.0816 -0.0038 27 1 2.2349 -10.6196 -0.0056 28 1 0.2423 -12.0177 -0.0073 29 1 -2.0026 -11.0176 -0.0069 30 1 -2.2872 -8.5963 -0.0141 31 1 -1.2664 -6.3213 -0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302653046.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:21 Heat of formation + Delta-G solvation = 91.483789 kcal Electronic energy + Delta-G solvation = -18144.839445 eV Core-core repulsion = 15197.756943 eV Total energy + Delta-G solvation = -2947.082501 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 4.30 seconds Orbital eigenvalues (eV) -42.65889 -41.55249 -38.02184 -35.72534 -34.63764 -33.94648 -32.33053 -31.12230 -30.19588 -27.52019 -25.46055 -24.70982 -23.17658 -22.61423 -22.01958 -19.80660 -18.85269 -18.41630 -17.76708 -17.27068 -16.55487 -16.09082 -15.64123 -15.45605 -15.24909 -15.09823 -14.78345 -14.19428 -14.05203 -13.26493 -13.08844 -13.01412 -12.75388 -12.57131 -12.32484 -11.96746 -11.79486 -11.78987 -11.30335 -11.07931 -10.80401 -10.37052 -10.21395 -9.45160 -8.98464 -8.59273 -6.65901 -0.66227 -0.32001 0.91561 1.28845 1.43574 1.60437 1.61642 2.08363 2.16381 2.47951 2.56573 3.16165 3.22964 3.30989 3.59453 3.70647 3.81911 3.90596 4.06309 4.29295 4.40730 4.48854 4.80409 4.84557 4.90353 5.06290 5.13256 5.19358 5.29323 5.40650 5.46942 5.53453 5.54935 5.93784 6.13205 6.22504 6.70007 6.80620 7.08216 8.36253 8.60763 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.057394 B = 0.003793 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.735678 B = 7379.337807 C = 7857.228453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.029 3.971 3 Si 1.009 2.991 4 H -0.246 1.246 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.468 4.468 8 H 0.108 0.892 9 C 0.319 3.681 10 N -0.385 5.385 11 N -0.309 5.309 12 C 0.110 3.890 13 C -0.046 4.046 14 C 0.134 3.866 15 N -0.480 5.480 16 C 0.091 3.909 17 C -0.107 4.107 18 C -0.092 4.092 19 C -0.107 4.107 20 C -0.107 4.107 21 C -0.105 4.105 22 C -0.050 4.050 23 N -0.628 5.628 24 H 0.423 0.577 25 H 0.288 0.712 26 H 0.169 0.831 27 H 0.146 0.854 28 H 0.167 0.833 29 H 0.164 0.836 30 H 0.146 0.854 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.776 -15.845 -0.012 16.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.193 4.193 3 Si 0.828 3.172 4 H -0.169 1.169 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.507 4.507 8 H 0.126 0.874 9 C 0.076 3.924 10 N -0.234 5.234 11 N -0.153 5.153 12 C -0.153 4.153 13 C -0.051 4.051 14 C -0.041 4.041 15 N -0.187 5.187 16 C -0.030 4.030 17 C -0.126 4.126 18 C -0.112 4.112 19 C -0.125 4.125 20 C -0.126 4.126 21 C -0.107 4.107 22 C -0.079 4.079 23 N -0.250 5.250 24 H 0.263 0.737 25 H 0.098 0.902 26 H 0.186 0.814 27 H 0.164 0.836 28 H 0.184 0.816 29 H 0.181 0.819 30 H 0.163 0.837 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.699 -15.840 -0.009 15.931 hybrid contribution 1.123 1.190 0.003 1.636 sum 2.822 -14.651 -0.006 14.920 Atomic orbital electron populations 1.70080 1.09428 1.30432 1.30398 1.27042 0.95693 1.04847 0.91754 0.84758 0.79226 0.74479 0.78734 1.16861 1.19181 1.19171 1.18819 0.95314 0.87519 1.49060 0.87389 1.21927 0.89968 0.85561 0.94924 1.75558 1.10750 1.05786 1.31275 1.74248 1.25003 1.00288 1.15767 1.22119 0.85318 0.91532 1.16300 1.18604 0.95821 0.87293 1.03406 1.23006 0.96004 0.90622 0.94444 1.67890 1.32306 1.05263 1.13258 1.19390 0.87982 0.95508 1.00140 1.21024 1.01207 0.89687 1.00659 1.21372 0.91317 1.01860 0.96609 1.21370 0.98979 0.94446 0.97693 1.21340 0.97493 0.94427 0.99366 1.18974 0.95707 0.93211 1.02772 1.21868 0.98525 0.92398 0.95098 1.43915 1.09126 1.05783 1.66216 0.73700 0.90181 0.81364 0.83642 0.81574 0.81879 0.83665 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -42.88 11.93 21.88 0.26 -42.62 16 2 C 0.03 1.43 5.50 85.36 0.47 1.90 16 3 Si 1.01 36.45 29.56 68.60 2.03 38.48 16 4 H -0.25 -8.18 7.11 99.48 0.71 -7.47 16 5 H -0.27 -9.37 7.11 99.48 0.71 -8.67 16 6 H -0.27 -9.37 7.11 99.48 0.71 -8.66 16 7 C -0.47 -24.16 9.44 23.12 0.22 -23.94 16 8 H 0.11 4.90 7.85 -2.91 -0.02 4.88 16 9 C 0.32 17.65 7.71 133.28 1.03 18.68 16 10 N -0.38 -23.50 10.49 -55.18 -0.58 -24.08 16 11 N -0.31 -17.34 11.94 -50.94 -0.61 -17.95 16 12 C 0.11 5.23 7.87 135.88 1.07 6.30 16 13 C -0.05 -1.81 5.89 -19.99 -0.12 -1.92 16 14 C 0.13 4.53 10.85 85.50 0.93 5.46 16 15 N -0.48 -15.69 10.30 -187.48 -1.93 -17.63 16 16 C 0.09 2.75 6.61 40.26 0.27 3.01 16 17 C -0.11 -2.39 9.97 22.34 0.22 -2.17 16 18 C -0.09 -1.47 9.94 22.05 0.22 -1.25 16 19 C -0.11 -1.76 9.96 22.05 0.22 -1.54 16 20 C -0.11 -2.42 9.77 22.36 0.22 -2.21 16 21 C -0.10 -3.18 5.74 -21.28 -0.12 -3.30 16 22 C -0.05 -1.79 9.58 23.07 0.22 -1.57 16 23 N -0.63 -28.97 6.23 -184.90 -1.15 -30.12 16 24 H 0.42 15.58 8.17 -92.70 -0.76 14.82 16 25 H 0.29 14.18 8.29 -92.71 -0.77 13.41 16 26 H 0.17 4.84 7.23 -2.91 -0.02 4.82 16 27 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 28 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 29 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 30 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 31 H 0.14 5.12 7.91 -2.91 -0.02 5.10 16 Total: -1.00 -73.29 282.30 3.29 -70.00 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.43 Total: 26.46 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 4.84 Total: -2.55 kcal Atomic # 7 Polarization: -128.39 SS G_CDS: -4.01 Total: -132.39 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Total: -73.29 3.29 -70.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302653046.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.480 kcal (2) G-P(sol) polarization free energy of solvation -73.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.30 seconds