Wall clock time and date at job start Mon Mar 30 2020 07:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00117 * 2 1 4 4 H 1.48499 * 109.47051 * 269.99288 * 3 2 1 5 5 H 1.48493 * 109.47284 * 29.99667 * 3 2 1 6 6 H 1.48508 * 109.47061 * 149.99877 * 3 2 1 7 7 C 1.37880 * 119.99505 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00270 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47338 * 60.00069 * 9 7 2 11 11 N 1.46900 * 109.47559 * 299.99978 * 9 7 2 12 12 C 1.50703 * 109.47355 * 179.97438 * 9 7 2 13 13 C 1.38413 * 119.91033 * 73.81412 * 12 9 7 14 14 C 1.38270 * 119.94450 * 180.02562 * 13 12 9 15 15 C 1.38586 * 119.97062 * 0.02562 * 14 13 12 16 16 C 1.38046 * 120.30420 * 359.96858 * 15 14 13 17 17 Cl 1.73603 * 120.08170 * 180.02562 * 16 15 14 18 18 C 1.38721 * 119.91471 * 253.84004 * 12 9 7 19 19 N 1.39743 * 120.11492 * 359.97438 * 18 12 9 20 20 C 1.51395 * 109.73914 * 180.02562 * 14 13 12 21 21 C 1.54339 * 105.17739 * 342.80409 * 20 14 13 22 22 C 1.51696 * 130.22494 * 359.87495 * 13 12 9 23 23 H 0.97005 * 120.00443 * 0.02562 * 1 2 3 24 24 H 1.00893 * 111.00227 * 187.07341 * 11 9 7 25 25 H 1.00909 * 110.99671 * 311.02686 * 11 9 7 26 26 H 1.07997 * 119.84996 * 179.97438 * 15 14 13 27 27 H 0.96999 * 120.00348 * 7.11080 * 19 18 12 28 28 H 0.97007 * 119.99629 * 187.10486 * 19 18 12 29 29 H 1.08996 * 110.30610 * 223.87789 * 20 14 13 30 30 H 1.09005 * 110.29773 * 101.73157 * 20 14 13 31 31 H 1.08999 * 110.82265 * 144.59621 * 21 20 14 32 32 H 1.08993 * 110.82030 * 267.94712 * 21 20 14 33 33 H 1.09005 * 110.25623 * 78.26863 * 22 13 12 34 34 H 1.09002 * 110.49988 * 316.01849 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6245 -2.5571 -0.8897 11 7 0.4058 -2.5768 1.1996 12 6 2.2301 -3.6447 0.0005 13 6 2.9328 -3.9520 1.1528 14 6 3.8318 -5.0026 1.1534 15 6 4.0286 -5.7461 0.0005 16 6 3.3301 -5.4436 -1.1511 17 17 3.5806 -6.3792 -2.5918 18 6 2.4252 -4.3880 -1.1544 19 7 1.7151 -4.0766 -2.3169 20 6 4.4649 -5.1329 2.5224 21 6 4.1859 -3.7880 3.2263 22 6 2.9020 -3.3002 2.5222 23 1 -0.4851 0.8401 -0.0004 24 1 -0.0208 -3.4872 1.2830 25 1 0.9329 -2.3471 2.0289 26 1 4.7315 -6.5659 0.0031 27 1 1.1633 -3.2796 -2.3494 28 1 1.7742 -4.6576 -3.0915 29 1 5.5387 -5.2951 2.4287 30 1 4.0048 -5.9519 3.0754 31 1 4.0105 -3.9374 4.2917 32 1 5.0061 -3.0887 3.0647 33 1 2.0206 -3.6252 3.0751 34 1 2.9114 -2.2143 2.4284 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309231432.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:13 Heat of formation + Delta-G solvation = 11.351848 kcal Electronic energy + Delta-G solvation = -18384.543256 eV Core-core repulsion = 15535.093467 eV Total energy + Delta-G solvation = -2849.449789 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.86600 -36.69131 -35.82371 -34.40140 -32.60326 -31.64839 -29.16821 -27.56895 -26.71509 -25.64097 -23.00670 -20.92969 -20.29915 -19.47446 -17.07098 -16.20952 -16.18878 -15.13891 -14.93659 -14.47778 -14.27936 -13.86214 -13.18830 -13.16790 -12.77071 -12.55261 -12.39019 -11.79650 -11.60040 -11.31634 -11.01877 -10.85709 -10.76742 -10.74842 -10.70354 -10.63943 -10.41224 -9.77919 -9.57857 -9.18949 -8.47808 -7.87137 -7.07980 -6.79214 -5.92296 -4.07339 1.82500 2.07002 2.59594 3.30142 3.37880 3.40880 4.21853 4.40539 4.47372 4.94922 5.03084 5.31428 5.35340 5.43966 5.67550 5.71564 5.95208 6.04361 6.11431 6.12601 6.24370 6.35593 6.49644 6.56024 6.64042 6.70565 6.76265 7.12139 7.37955 7.57984 7.87140 7.99450 8.12974 8.32742 8.62537 9.02390 9.13693 9.61341 11.10885 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.017538 B = 0.007833 C = 0.006217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.133021 B = 3573.981330 C = 4502.709740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.082 3.918 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.266 3.734 10 H 0.041 0.959 11 N -0.812 5.812 12 C -0.131 4.131 13 C -0.038 4.038 14 C -0.156 4.156 15 C -0.074 4.074 16 C -0.120 4.120 17 Cl -0.095 7.095 18 C 0.231 3.769 19 N -0.869 5.869 20 C -0.067 4.067 21 C -0.121 4.121 22 C -0.084 4.084 23 H 0.256 0.744 24 H 0.295 0.705 25 H 0.325 0.675 26 H 0.117 0.883 27 H 0.409 0.591 28 H 0.391 0.609 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.935 -10.073 1.697 11.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.125 4.125 3 Si 0.709 3.291 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.569 4.569 8 H 0.072 0.928 9 C 0.156 3.844 10 H 0.059 0.941 11 N -0.339 5.339 12 C -0.138 4.138 13 C -0.039 4.039 14 C -0.158 4.158 15 C -0.093 4.093 16 C -0.151 4.151 17 Cl -0.067 7.067 18 C 0.124 3.876 19 N -0.411 5.411 20 C -0.104 4.104 21 C -0.158 4.158 22 C -0.121 4.121 23 H 0.066 0.934 24 H 0.105 0.895 25 H 0.139 0.861 26 H 0.135 0.865 27 H 0.242 0.758 28 H 0.219 0.781 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.326 -9.421 1.258 10.895 hybrid contribution 1.073 0.090 -0.347 1.131 sum 6.399 -9.331 0.911 11.351 Atomic orbital electron populations 1.70111 1.05556 1.25737 1.46674 1.24967 0.94641 0.98492 0.94349 0.86793 0.80077 0.84170 0.78055 1.20830 1.21279 1.19971 1.20864 0.92311 0.89382 1.54370 0.92803 1.17928 0.86913 0.88549 0.91032 0.94101 1.59296 1.38124 1.30847 1.05675 1.20778 1.02661 1.00296 0.90031 1.20181 0.94373 0.94607 0.94734 1.20159 1.02021 0.98810 0.94833 1.19900 0.99323 0.99709 0.90368 1.20081 1.06098 1.00083 0.88842 1.98278 1.96305 1.72902 1.39187 1.17216 0.90457 0.91871 0.88059 1.42671 1.53964 1.31264 1.13154 1.20842 0.99624 0.97842 0.92102 1.22292 0.98203 0.96434 0.98890 1.21204 0.97240 1.02078 0.91618 0.93404 0.89520 0.86068 0.86505 0.75809 0.78082 0.91752 0.91306 0.91214 0.91272 0.90812 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.60 12.77 55.43 0.71 -22.89 16 2 C 0.08 2.20 5.39 -17.82 -0.10 2.10 16 3 Si 0.88 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -13.80 8.02 -34.44 -0.28 -14.08 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.27 6.21 2.62 -70.02 -0.18 6.03 16 10 H 0.04 1.04 5.92 -51.93 -0.31 0.73 16 11 N -0.81 -18.32 8.35 -6.65 -0.06 -18.37 16 12 C -0.13 -2.70 4.81 -104.38 -0.50 -3.21 16 13 C -0.04 -0.71 5.74 -104.05 -0.60 -1.30 16 14 C -0.16 -2.63 6.14 -104.14 -0.64 -3.26 16 15 C -0.07 -1.22 9.82 -39.52 -0.39 -1.61 16 16 C -0.12 -2.10 6.33 -39.36 -0.25 -2.35 16 17 Cl -0.10 -1.43 27.62 -51.86 -1.43 -2.86 16 18 C 0.23 4.44 6.73 -83.78 -0.56 3.88 16 19 N -0.87 -15.12 8.91 32.41 0.29 -14.83 16 20 C -0.07 -0.91 6.77 -26.84 -0.18 -1.09 16 21 C -0.12 -1.63 7.07 -25.33 -0.18 -1.81 16 22 C -0.08 -1.41 4.73 -26.69 -0.13 -1.53 16 23 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 24 H 0.29 6.08 8.94 -39.30 -0.35 5.73 16 25 H 0.33 7.05 5.59 -39.29 -0.22 6.83 16 26 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 27 H 0.41 7.52 6.62 -40.82 -0.27 7.25 16 28 H 0.39 5.89 7.55 -40.82 -0.31 5.59 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.15 7.55 -51.93 -0.39 0.76 16 34 H 0.09 1.78 7.17 -51.93 -0.37 1.41 16 LS Contribution 288.69 15.07 4.35 4.35 Total: -1.00 -27.95 288.69 -9.02 -36.97 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -3.88 Total: 20.13 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -3.98 Total: -18.23 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.94 Total: -56.10 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -1.43 Total: -2.86 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.95 -9.02 -36.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309231432.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.324 kcal (2) G-P(sol) polarization free energy of solvation -27.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds