Wall clock time and date at job start Mon Mar 30 2020 07:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00117 * 2 1 4 4 H 1.48499 * 109.47051 * 269.99288 * 3 2 1 5 5 H 1.48493 * 109.47284 * 29.99667 * 3 2 1 6 6 H 1.48508 * 109.47061 * 149.99877 * 3 2 1 7 7 C 1.37880 * 119.99505 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00270 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47338 * 60.00069 * 9 7 2 11 11 N 1.46900 * 109.47559 * 299.99978 * 9 7 2 12 12 C 1.50703 * 109.47355 * 179.97438 * 9 7 2 13 13 C 1.38413 * 119.91033 * 73.81412 * 12 9 7 14 14 C 1.38270 * 119.94450 * 180.02562 * 13 12 9 15 15 C 1.38586 * 119.97062 * 0.02562 * 14 13 12 16 16 C 1.38046 * 120.30420 * 359.96858 * 15 14 13 17 17 Cl 1.73603 * 120.08170 * 180.02562 * 16 15 14 18 18 C 1.38721 * 119.91471 * 253.84004 * 12 9 7 19 19 N 1.39743 * 120.11492 * 359.97438 * 18 12 9 20 20 C 1.51395 * 109.73914 * 180.02562 * 14 13 12 21 21 C 1.54339 * 105.17739 * 342.80409 * 20 14 13 22 22 C 1.51696 * 130.22494 * 359.87495 * 13 12 9 23 23 H 0.97005 * 120.00443 * 0.02562 * 1 2 3 24 24 H 1.00893 * 111.00227 * 187.07341 * 11 9 7 25 25 H 1.00909 * 110.99671 * 311.02686 * 11 9 7 26 26 H 1.07997 * 119.84996 * 179.97438 * 15 14 13 27 27 H 0.96999 * 120.00348 * 7.11080 * 19 18 12 28 28 H 0.97007 * 119.99629 * 187.10486 * 19 18 12 29 29 H 1.08996 * 110.30610 * 223.87789 * 20 14 13 30 30 H 1.09005 * 110.29773 * 101.73157 * 20 14 13 31 31 H 1.08999 * 110.82265 * 144.59621 * 21 20 14 32 32 H 1.08993 * 110.82030 * 267.94712 * 21 20 14 33 33 H 1.09005 * 110.25623 * 78.26863 * 22 13 12 34 34 H 1.09002 * 110.49988 * 316.01849 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6245 -2.5571 -0.8897 11 7 0.4058 -2.5768 1.1996 12 6 2.2301 -3.6447 0.0005 13 6 2.9328 -3.9520 1.1528 14 6 3.8318 -5.0026 1.1534 15 6 4.0286 -5.7461 0.0005 16 6 3.3301 -5.4436 -1.1511 17 17 3.5806 -6.3792 -2.5918 18 6 2.4252 -4.3880 -1.1544 19 7 1.7151 -4.0766 -2.3169 20 6 4.4649 -5.1329 2.5224 21 6 4.1859 -3.7880 3.2263 22 6 2.9020 -3.3002 2.5222 23 1 -0.4851 0.8401 -0.0004 24 1 -0.0208 -3.4872 1.2830 25 1 0.9329 -2.3471 2.0289 26 1 4.7315 -6.5659 0.0031 27 1 1.1633 -3.2796 -2.3494 28 1 1.7742 -4.6576 -3.0915 29 1 5.5387 -5.2951 2.4287 30 1 4.0048 -5.9519 3.0754 31 1 4.0105 -3.9374 4.2917 32 1 5.0061 -3.0887 3.0647 33 1 2.0206 -3.6252 3.0751 34 1 2.9114 -2.2143 2.4284 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309231432.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:11 Heat of formation + Delta-G solvation = -6.139645 kcal Electronic energy + Delta-G solvation = -18385.301744 eV Core-core repulsion = 15535.093467 eV Total energy + Delta-G solvation = -2850.208277 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.23216 -37.96716 -37.22931 -36.05029 -33.97787 -33.52102 -30.66367 -28.89309 -28.24230 -27.33947 -24.60055 -22.31873 -21.65056 -20.90239 -18.74654 -17.91073 -17.57109 -16.71986 -16.30894 -15.95605 -15.86291 -15.45806 -14.65462 -14.53769 -14.28208 -14.18434 -13.75012 -13.39390 -12.85514 -12.81076 -12.73067 -12.42810 -12.38465 -12.13969 -11.99588 -11.91405 -11.86131 -11.43707 -11.13334 -10.82025 -10.53465 -9.34109 -8.77864 -8.23051 -7.94923 -6.16200 0.42500 0.69323 1.27699 1.40997 1.44152 1.52071 2.46121 2.84847 3.03452 3.27470 3.72693 3.81030 4.16632 4.27947 4.38652 4.43069 4.59369 4.71967 4.82251 4.94864 4.96734 5.05506 5.21012 5.21697 5.27683 5.38466 5.44975 5.64519 5.76353 5.98668 6.00125 6.20693 6.57098 6.69249 6.95708 7.15865 7.33586 7.55138 9.05588 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.017538 B = 0.007833 C = 0.006217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.133021 B = 3573.981330 C = 4502.709740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.039 3.961 3 Si 0.938 3.062 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.039 0.961 9 C 0.274 3.726 10 H 0.016 0.984 11 N -0.821 5.821 12 C -0.161 4.161 13 C -0.054 4.054 14 C -0.157 4.157 15 C -0.071 4.071 16 C -0.126 4.126 17 Cl -0.074 7.074 18 C 0.213 3.787 19 N -0.866 5.866 20 C -0.062 4.062 21 C -0.113 4.113 22 C -0.085 4.085 23 H 0.255 0.745 24 H 0.305 0.695 25 H 0.329 0.671 26 H 0.145 0.855 27 H 0.403 0.597 28 H 0.400 0.600 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.656 -11.421 2.570 13.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.165 4.165 3 Si 0.764 3.236 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.057 0.943 9 C 0.164 3.836 10 H 0.034 0.966 11 N -0.349 5.349 12 C -0.168 4.168 13 C -0.055 4.055 14 C -0.160 4.160 15 C -0.090 4.090 16 C -0.158 4.158 17 Cl -0.045 7.045 18 C 0.106 3.894 19 N -0.408 5.408 20 C -0.099 4.099 21 C -0.151 4.151 22 C -0.122 4.122 23 H 0.064 0.936 24 H 0.115 0.885 25 H 0.143 0.857 26 H 0.163 0.837 27 H 0.234 0.766 28 H 0.230 0.770 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.065 -10.788 2.122 13.069 hybrid contribution 0.563 0.423 -0.658 0.964 sum 7.629 -10.365 1.464 12.953 Atomic orbital electron populations 1.70219 1.06681 1.26191 1.48156 1.25577 0.95314 1.01245 0.94361 0.85900 0.78940 0.80835 0.77876 1.20724 1.21054 1.19756 1.21031 0.91669 0.90937 1.53373 0.94311 1.17573 0.87033 0.88826 0.90197 0.96628 1.59150 1.38492 1.31662 1.05639 1.20550 1.03769 1.00627 0.91822 1.20496 0.94568 0.95583 0.94890 1.20606 1.01159 0.97678 0.96508 1.20275 0.98965 0.99968 0.89767 1.20217 1.05606 0.99804 0.90165 1.98281 1.96146 1.72105 1.37985 1.17381 0.91337 0.92653 0.88014 1.42607 1.53746 1.31158 1.13308 1.20920 1.00763 0.98227 0.89963 1.22307 0.96147 0.96367 1.00244 1.21211 0.99547 1.00099 0.91370 0.93621 0.88468 0.85666 0.83737 0.76632 0.76960 0.89704 0.89221 0.88367 0.91453 0.90104 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.93 12.77 21.45 0.27 -49.66 16 2 C 0.04 2.10 5.39 84.66 0.46 2.56 16 3 Si 0.94 43.26 29.54 68.60 2.03 45.29 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.53 -28.36 8.02 25.60 0.21 -28.15 16 8 H 0.04 2.14 7.74 -2.91 -0.02 2.12 16 9 C 0.27 13.19 2.62 43.42 0.11 13.31 16 10 H 0.02 0.84 5.92 -2.39 -0.01 0.83 16 11 N -0.82 -37.94 8.35 -174.95 -1.46 -39.40 16 12 C -0.16 -6.73 4.81 -19.71 -0.09 -6.82 16 13 C -0.05 -2.00 5.74 -19.50 -0.11 -2.11 16 14 C -0.16 -4.92 6.14 -19.55 -0.12 -5.04 16 15 C -0.07 -2.16 9.82 22.31 0.22 -1.94 16 16 C -0.13 -4.24 6.33 22.42 0.14 -4.10 16 17 Cl -0.07 -2.07 27.62 -2.72 -0.08 -2.15 16 18 C 0.21 8.19 6.73 38.19 0.26 8.45 16 19 N -0.87 -30.64 8.91 -51.37 -0.46 -31.09 16 20 C -0.06 -1.43 6.77 30.52 0.21 -1.23 16 21 C -0.11 -2.75 7.07 31.50 0.22 -2.52 16 22 C -0.09 -2.77 4.73 30.62 0.14 -2.63 16 23 H 0.25 13.97 8.31 -92.70 -0.77 13.20 16 24 H 0.30 12.84 8.94 -89.70 -0.80 12.04 16 25 H 0.33 14.59 5.59 -89.69 -0.50 14.08 16 26 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 27 H 0.40 15.41 6.62 -92.71 -0.61 14.80 16 28 H 0.40 12.06 7.55 -92.70 -0.70 11.36 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.08 2.46 7.55 -2.38 -0.02 2.44 16 34 H 0.06 2.45 7.17 -2.39 -0.02 2.43 16 Total: -1.00 -60.09 288.69 0.51 -59.58 By element: Atomic # 1 Polarization: 49.09 SS G_CDS: -1.44 Total: 47.65 kcal Atomic # 6 Polarization: -31.87 SS G_CDS: 1.64 Total: -30.23 kcal Atomic # 7 Polarization: -118.51 SS G_CDS: -1.65 Total: -120.15 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.08 Total: -2.15 kcal Total: -60.09 0.51 -59.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309231432.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.444 kcal (2) G-P(sol) polarization free energy of solvation -60.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds