Wall clock time and date at job start Mon Mar 30 2020 06:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00622 * 2 1 4 4 H 1.48498 * 109.47326 * 270.00546 * 3 2 1 5 5 H 1.48501 * 109.46921 * 30.00204 * 3 2 1 6 6 H 1.48500 * 109.47573 * 149.99946 * 3 2 1 7 7 C 1.37878 * 119.99549 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99871 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00019 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.48236 * 59.97828 * 9 7 2 11 11 C 1.53097 * 109.47797 * 179.97438 * 9 7 2 12 12 C 1.53174 * 109.16185 * 62.38741 * 11 9 7 13 13 C 1.53176 * 109.04061 * 56.97999 * 12 11 9 14 14 C 1.53091 * 109.21206 * 302.98570 * 13 12 11 15 15 H 1.09000 * 109.48171 * 297.66002 * 14 13 12 16 16 C 1.50704 * 109.48023 * 177.62153 * 14 13 12 17 17 C 1.38234 * 120.00779 * 264.99870 * 16 14 13 18 18 C 1.38217 * 120.00990 * 180.02562 * 17 16 14 19 19 C 1.38256 * 120.03139 * 0.02562 * 18 17 16 20 20 C 1.38195 * 120.01309 * 359.97149 * 19 18 17 21 21 C 1.38330 * 120.00235 * 84.72942 * 16 14 13 22 22 Cl 1.73596 * 120.01682 * 359.97369 * 21 16 14 23 23 O 1.42902 * 109.48783 * 299.94456 * 9 7 2 24 24 H 0.97004 * 119.99394 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.52587 * 302.47593 * 11 9 7 26 26 H 1.09004 * 109.57034 * 182.32094 * 11 9 7 27 27 H 1.08995 * 109.54500 * 297.10556 * 12 11 9 28 28 H 1.09007 * 109.61482 * 176.88750 * 12 11 9 29 29 H 1.09002 * 109.52410 * 62.92413 * 13 12 11 30 30 H 1.09004 * 109.52533 * 183.05059 * 13 12 11 31 31 H 1.07997 * 119.99485 * 0.02562 * 17 16 14 32 32 H 1.08006 * 119.98290 * 179.97438 * 18 17 16 33 33 H 1.08003 * 119.99892 * 179.97438 * 19 18 17 34 34 H 1.07999 * 120.00906 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6525 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0017 10 1 0.6242 -2.5563 -0.8917 11 6 2.2455 -3.6630 -0.0027 12 6 3.0819 -3.6107 1.2794 13 6 2.1440 -3.6487 2.4898 14 6 1.1533 -2.4853 2.3962 15 1 1.6971 -1.5412 2.4285 16 6 0.1903 -2.5508 3.5536 17 6 -1.0343 -3.1733 3.3996 18 6 -1.9178 -3.2330 4.4609 19 6 -1.5776 -2.6698 5.6769 20 6 -0.3535 -2.0473 5.8321 21 6 0.5341 -1.9930 4.7718 22 17 2.0749 -1.2179 4.9682 23 8 0.4296 -2.5765 1.1653 24 1 -0.4849 0.8401 0.0004 25 1 2.9015 -3.5808 -0.8693 26 1 1.7025 -4.6073 -0.0452 27 1 3.6639 -2.6893 1.2978 28 1 3.7548 -4.4676 1.3125 29 1 1.5982 -4.5922 2.4983 30 1 2.7276 -3.5572 3.4059 31 1 -1.3008 -3.6130 2.4499 32 1 -2.8747 -3.7190 4.3400 33 1 -2.2684 -2.7164 6.5057 34 1 -0.0880 -1.6071 6.7819 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309350957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:53 Heat of formation + Delta-G solvation = -41.272281 kcal Electronic energy + Delta-G solvation = -18608.433474 eV Core-core repulsion = 15724.408980 eV Total energy + Delta-G solvation = -2884.024494 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.31683 -37.69515 -36.03222 -32.85235 -32.40701 -31.55655 -30.35260 -28.69724 -25.63072 -23.69664 -22.43746 -22.03604 -20.68582 -18.94915 -16.84535 -16.36781 -15.30357 -15.19428 -14.68279 -14.29841 -13.76090 -13.64274 -13.48439 -13.32374 -13.00667 -12.52469 -12.03618 -11.78751 -11.34315 -11.17358 -11.13410 -11.02584 -10.88403 -10.61603 -10.52190 -10.28298 -10.14850 -9.72690 -9.56147 -8.78301 -8.51553 -8.44247 -8.30343 -7.72544 -5.98258 -4.12997 1.51059 1.65934 2.53693 3.29361 3.37376 3.39584 4.00188 4.41921 4.86513 5.11702 5.28109 5.33060 5.47469 5.66057 5.75509 5.78354 5.86567 6.02389 6.10198 6.23295 6.31965 6.39084 6.51195 6.53566 6.64956 6.78516 6.80749 6.95469 6.99784 7.05005 7.16890 7.23216 7.69059 7.88459 8.21926 8.81206 9.05970 9.59372 11.06061 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017640 B = 0.008439 C = 0.007691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.941824 B = 3317.101488 C = 3639.521411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.081 3.919 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.559 4.559 8 H 0.057 0.943 9 C 0.214 3.786 10 H 0.062 0.938 11 C -0.142 4.142 12 C -0.108 4.108 13 C -0.135 4.135 14 C 0.138 3.862 15 H 0.084 0.916 16 C -0.047 4.047 17 C -0.080 4.080 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.118 4.118 21 C -0.034 4.034 22 Cl -0.074 7.074 23 O -0.368 6.368 24 H 0.260 0.740 25 H 0.056 0.944 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.139 0.861 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.450 -6.030 9.553 11.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.125 4.125 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.596 4.596 8 H 0.075 0.925 9 C 0.158 3.842 10 H 0.080 0.920 11 C -0.180 4.180 12 C -0.145 4.145 13 C -0.172 4.172 14 C 0.079 3.921 15 H 0.102 0.898 16 C -0.048 4.048 17 C -0.099 4.099 18 C -0.141 4.141 19 C -0.142 4.142 20 C -0.137 4.137 21 C -0.060 4.060 22 Cl -0.045 7.045 23 O -0.287 6.287 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.157 0.843 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.678 -5.877 9.554 11.237 hybrid contribution 0.864 1.171 0.036 1.456 sum 0.186 -4.706 9.590 10.684 Atomic orbital electron populations 1.70044 1.05788 1.26334 1.47132 1.24997 0.94646 0.98846 0.93979 0.86817 0.80282 0.84123 0.78187 1.20544 1.21098 1.19739 1.21521 0.93135 0.91077 1.53893 0.92470 1.19712 0.88600 0.91002 0.84894 0.92019 1.22188 0.99296 0.99632 0.96890 1.21431 0.97312 1.00899 0.94863 1.22064 0.98032 0.98884 0.98267 1.20434 0.89628 0.98164 0.83824 0.89828 1.19925 0.96208 0.95408 0.93251 1.21096 0.92284 0.97426 0.99050 1.21238 0.99614 1.00036 0.93177 1.20963 0.96088 0.99303 0.97840 1.20889 0.93841 1.01147 0.97830 1.20755 0.88654 1.01063 0.95538 1.98347 1.28917 1.79840 1.97362 1.87901 1.34809 1.93625 1.12343 0.93047 0.92510 0.94050 0.91231 0.93947 0.92734 0.92512 0.84342 0.85931 0.85846 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.78 12.84 55.43 0.71 -24.07 16 2 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 3 Si 0.88 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.56 -14.94 6.60 -34.44 -0.23 -15.17 16 8 H 0.06 1.52 6.87 -52.49 -0.36 1.15 16 9 C 0.21 5.31 3.16 -27.83 -0.09 5.23 16 10 H 0.06 1.66 8.14 -51.93 -0.42 1.23 16 11 C -0.14 -2.94 5.59 -26.59 -0.15 -3.09 16 12 C -0.11 -2.07 5.78 -26.55 -0.15 -2.22 16 13 C -0.13 -2.57 5.40 -26.59 -0.14 -2.71 16 14 C 0.14 3.02 2.10 -27.83 -0.06 2.96 16 15 H 0.08 2.07 6.09 -51.93 -0.32 1.75 16 16 C -0.05 -0.93 5.07 -104.59 -0.53 -1.46 16 17 C -0.08 -1.44 9.35 -39.59 -0.37 -1.81 16 18 C -0.12 -1.79 10.04 -39.58 -0.40 -2.19 16 19 C -0.12 -1.67 10.05 -39.59 -0.40 -2.07 16 20 C -0.12 -1.76 9.83 -39.54 -0.39 -2.15 16 21 C -0.03 -0.59 6.31 -39.49 -0.25 -0.84 16 22 Cl -0.07 -1.28 27.13 -51.86 -1.41 -2.68 16 23 O -0.37 -9.11 8.49 -35.23 -0.30 -9.41 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.43 6.85 -51.93 -0.36 1.08 16 28 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.00 7.86 -51.93 -0.41 0.60 16 31 H 0.14 2.55 7.35 -52.49 -0.39 2.17 16 32 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 292.22 15.07 4.40 4.40 Total: -1.00 -28.81 292.22 -9.20 -38.01 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -4.34 Total: 0.86 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -3.25 Total: -23.39 kcal Atomic # 7 Polarization: -24.78 SS G_CDS: 0.71 Total: -24.07 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.30 Total: -9.41 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -1.41 Total: -2.68 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.81 -9.20 -38.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309350957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.262 kcal (2) G-P(sol) polarization free energy of solvation -28.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds