Wall clock time and date at job start Mon Mar 30 2020 06:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00622 * 2 1 4 4 H 1.48498 * 109.47326 * 270.00546 * 3 2 1 5 5 H 1.48501 * 109.46921 * 30.00204 * 3 2 1 6 6 H 1.48500 * 109.47573 * 149.99946 * 3 2 1 7 7 C 1.37878 * 119.99549 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99871 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00019 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.48236 * 59.97828 * 9 7 2 11 11 C 1.53097 * 109.47797 * 179.97438 * 9 7 2 12 12 C 1.53174 * 109.16185 * 62.38741 * 11 9 7 13 13 C 1.53176 * 109.04061 * 56.97999 * 12 11 9 14 14 C 1.53091 * 109.21206 * 302.98570 * 13 12 11 15 15 H 1.09000 * 109.48171 * 297.66002 * 14 13 12 16 16 C 1.50704 * 109.48023 * 177.62153 * 14 13 12 17 17 C 1.38234 * 120.00779 * 264.99870 * 16 14 13 18 18 C 1.38217 * 120.00990 * 180.02562 * 17 16 14 19 19 C 1.38256 * 120.03139 * 0.02562 * 18 17 16 20 20 C 1.38195 * 120.01309 * 359.97149 * 19 18 17 21 21 C 1.38330 * 120.00235 * 84.72942 * 16 14 13 22 22 Cl 1.73596 * 120.01682 * 359.97369 * 21 16 14 23 23 O 1.42902 * 109.48783 * 299.94456 * 9 7 2 24 24 H 0.97004 * 119.99394 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.52587 * 302.47593 * 11 9 7 26 26 H 1.09004 * 109.57034 * 182.32094 * 11 9 7 27 27 H 1.08995 * 109.54500 * 297.10556 * 12 11 9 28 28 H 1.09007 * 109.61482 * 176.88750 * 12 11 9 29 29 H 1.09002 * 109.52410 * 62.92413 * 13 12 11 30 30 H 1.09004 * 109.52533 * 183.05059 * 13 12 11 31 31 H 1.07997 * 119.99485 * 0.02562 * 17 16 14 32 32 H 1.08006 * 119.98290 * 179.97438 * 18 17 16 33 33 H 1.08003 * 119.99892 * 179.97438 * 19 18 17 34 34 H 1.07999 * 120.00906 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6525 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0017 10 1 0.6242 -2.5563 -0.8917 11 6 2.2455 -3.6630 -0.0027 12 6 3.0819 -3.6107 1.2794 13 6 2.1440 -3.6487 2.4898 14 6 1.1533 -2.4853 2.3962 15 1 1.6971 -1.5412 2.4285 16 6 0.1903 -2.5508 3.5536 17 6 -1.0343 -3.1733 3.3996 18 6 -1.9178 -3.2330 4.4609 19 6 -1.5776 -2.6698 5.6769 20 6 -0.3535 -2.0473 5.8321 21 6 0.5341 -1.9930 4.7718 22 17 2.0749 -1.2179 4.9682 23 8 0.4296 -2.5765 1.1653 24 1 -0.4849 0.8401 0.0004 25 1 2.9015 -3.5808 -0.8693 26 1 1.7025 -4.6073 -0.0452 27 1 3.6639 -2.6893 1.2978 28 1 3.7548 -4.4676 1.3125 29 1 1.5982 -4.5922 2.4983 30 1 2.7276 -3.5572 3.4059 31 1 -1.3008 -3.6130 2.4499 32 1 -2.8747 -3.7190 4.3400 33 1 -2.2684 -2.7164 6.5057 34 1 -0.0880 -1.6071 6.7819 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309350957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:53 Heat of formation + Delta-G solvation = -56.119832 kcal Electronic energy + Delta-G solvation = -18609.077312 eV Core-core repulsion = 15724.408980 eV Total energy + Delta-G solvation = -2884.668332 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.75167 -39.28012 -37.34220 -34.75548 -34.09950 -33.24971 -31.58489 -30.27727 -27.56280 -25.28279 -24.03936 -23.42905 -22.10630 -20.73362 -18.39120 -18.06598 -16.84882 -16.73312 -16.48735 -15.83708 -15.37036 -15.29199 -14.94187 -14.70751 -14.59479 -14.07498 -13.65857 -13.43889 -13.01788 -12.83893 -12.63660 -12.48776 -12.45677 -12.37147 -12.10443 -11.86769 -11.78135 -11.52357 -11.16465 -10.73078 -10.45373 -9.91602 -9.68539 -9.38234 -8.09492 -6.28992 0.26081 0.41406 1.23126 1.35022 1.37309 1.45540 2.38835 2.75465 3.10120 3.44437 3.90986 4.04268 4.17800 4.21807 4.24369 4.37092 4.51664 4.56302 4.63064 4.76020 4.81933 4.95520 4.99004 5.12132 5.23638 5.25402 5.35689 5.37568 5.46475 5.51563 5.61454 5.72295 5.82263 5.97588 6.17445 6.76816 7.13371 7.47421 8.94653 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017640 B = 0.008439 C = 0.007691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.941824 B = 3317.101488 C = 3639.521411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.034 3.966 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.560 4.560 8 H 0.056 0.944 9 C 0.207 3.793 10 H 0.029 0.971 11 C -0.135 4.135 12 C -0.105 4.105 13 C -0.128 4.128 14 C 0.141 3.859 15 H 0.048 0.952 16 C -0.080 4.080 17 C -0.102 4.102 18 C -0.115 4.115 19 C -0.109 4.109 20 C -0.115 4.115 21 C -0.050 4.050 22 Cl -0.080 7.080 23 O -0.387 6.387 24 H 0.258 0.742 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.121 0.879 32 H 0.155 0.845 33 H 0.169 0.831 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.557 -6.669 11.620 13.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.168 4.168 3 Si 0.760 3.240 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.598 4.598 8 H 0.074 0.926 9 C 0.151 3.849 10 H 0.047 0.953 11 C -0.173 4.173 12 C -0.142 4.142 13 C -0.165 4.165 14 C 0.082 3.918 15 H 0.066 0.934 16 C -0.081 4.081 17 C -0.121 4.121 18 C -0.133 4.133 19 C -0.127 4.127 20 C -0.134 4.134 21 C -0.077 4.077 22 Cl -0.051 7.051 23 O -0.306 6.306 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.139 0.861 32 H 0.172 0.828 33 H 0.186 0.814 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.766 -6.522 11.617 13.345 hybrid contribution 0.831 1.328 -0.549 1.660 sum 0.065 -5.194 11.068 12.227 Atomic orbital electron populations 1.70171 1.07143 1.26779 1.48849 1.25677 0.95314 1.01906 0.93941 0.85935 0.79151 0.80482 0.78481 1.19616 1.21233 1.19224 1.21785 0.93108 0.92141 1.52749 0.92627 1.19620 0.88751 0.92203 0.84312 0.95310 1.22065 0.98672 0.98381 0.98160 1.21418 0.97347 1.01462 0.93961 1.22001 0.97577 0.98173 0.98788 1.20397 0.90451 0.97514 0.83401 0.93391 1.19875 0.96871 0.98057 0.93304 1.21097 0.92745 0.98480 0.99732 1.21591 0.99988 0.99230 0.92499 1.21482 0.95896 0.96847 0.98452 1.21303 0.93633 1.00463 0.97962 1.20940 0.89208 1.01637 0.95886 1.98335 1.29478 1.79992 1.97315 1.87832 1.35720 1.93744 1.13331 0.93330 0.91888 0.92590 0.93032 0.90526 0.91811 0.91178 0.86096 0.82760 0.81390 0.82812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.33 12.84 21.45 0.28 -53.06 16 2 C 0.03 1.93 5.40 84.66 0.46 2.39 16 3 Si 0.93 44.47 29.54 68.60 2.03 46.49 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.56 -30.76 6.60 25.60 0.17 -30.59 16 8 H 0.06 3.00 6.87 -2.91 -0.02 2.98 16 9 C 0.21 10.66 3.16 29.88 0.09 10.76 16 10 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 11 C -0.13 -5.58 5.59 30.69 0.17 -5.40 16 12 C -0.10 -3.92 5.78 30.71 0.18 -3.75 16 13 C -0.13 -4.81 5.40 30.68 0.17 -4.65 16 14 C 0.14 6.28 2.10 29.88 0.06 6.34 16 15 H 0.05 2.46 6.09 -2.39 -0.01 2.45 16 16 C -0.08 -3.16 5.07 -19.84 -0.10 -3.26 16 17 C -0.10 -3.64 9.35 22.26 0.21 -3.43 16 18 C -0.12 -3.06 10.04 22.27 0.22 -2.83 16 19 C -0.11 -2.50 10.05 22.26 0.22 -2.27 16 20 C -0.12 -3.08 9.83 22.29 0.22 -2.86 16 21 C -0.05 -1.73 6.31 22.33 0.14 -1.59 16 22 Cl -0.08 -2.74 27.13 -2.72 -0.07 -2.81 16 23 O -0.39 -19.88 8.49 -148.98 -1.26 -21.14 16 24 H 0.26 14.78 8.31 -92.71 -0.77 14.00 16 25 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 27 H 0.05 2.11 6.85 -2.39 -0.02 2.09 16 28 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 29 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.07 2.43 7.86 -2.38 -0.02 2.41 16 31 H 0.12 4.61 7.35 -2.91 -0.02 4.59 16 32 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 33 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -64.35 292.22 4.27 -60.08 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 1.09 Total: 11.59 kcal Atomic # 6 Polarization: -43.37 SS G_CDS: 2.21 Total: -41.16 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.28 Total: -53.06 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -1.26 Total: -21.14 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 17 Polarization: -2.74 SS G_CDS: -0.07 Total: -2.81 kcal Total: -64.35 4.27 -60.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309350957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.962 kcal (2) G-P(sol) polarization free energy of solvation -64.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds