Wall clock time and date at job start Mon Mar 30 2020 07:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50705 * 109.82127 * 2 1 4 4 H 1.07997 * 120.00225 * 245.39505 * 3 2 1 5 5 C 1.37880 * 119.99783 * 65.38987 * 3 2 1 6 6 N 1.31511 * 120.00105 * 5.35888 * 5 3 2 7 7 Si 1.86804 * 119.99803 * 185.35574 * 5 3 2 8 8 H 1.48498 * 109.47090 * 180.02562 * 7 5 3 9 9 H 1.48500 * 109.46889 * 300.00379 * 7 5 3 10 10 H 1.48501 * 109.46928 * 60.00078 * 7 5 3 11 11 C 1.54377 * 109.83269 * 239.11570 * 2 1 3 12 12 C 1.55304 * 102.25094 * 261.75056 * 11 2 1 13 13 C 1.54943 * 100.94247 * 325.86723 * 12 11 2 14 14 H 1.09002 * 110.31126 * 277.43340 * 13 12 11 15 15 C 1.50704 * 110.31371 * 155.35921 * 13 12 11 16 16 C 1.38233 * 120.00721 * 265.00398 * 15 13 12 17 17 C 1.38215 * 120.01384 * 180.02562 * 16 15 13 18 18 C 1.38269 * 120.02505 * 359.97438 * 17 16 15 19 19 C 1.38189 * 120.01472 * 359.97438 * 18 17 16 20 20 C 1.38328 * 120.00321 * 84.72320 * 15 13 12 21 21 Cl 1.73593 * 120.01661 * 359.97438 * 20 15 13 22 22 O 1.43233 * 109.82835 * 120.88029 * 2 1 3 23 23 H 1.08995 * 109.46878 * 55.70408 * 1 2 3 24 24 H 1.08997 * 109.46833 * 175.70285 * 1 2 3 25 25 H 1.08996 * 109.47164 * 295.70610 * 1 2 3 26 26 H 0.97000 * 120.00365 * 355.06431 * 6 5 3 27 27 H 1.09002 * 110.84970 * 19.93582 * 11 2 1 28 28 H 1.08997 * 110.85077 * 143.35616 * 11 2 1 29 29 H 1.09005 * 111.12907 * 83.78537 * 12 11 2 30 30 H 1.09001 * 111.12861 * 207.94616 * 12 11 2 31 31 H 1.08000 * 119.99302 * 359.97438 * 16 15 13 32 32 H 1.07997 * 119.99059 * 179.97438 * 17 16 15 33 33 H 1.08000 * 119.98984 * 179.97438 * 18 17 16 34 34 H 1.07996 * 120.00881 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0411 1.4178 0.0000 4 1 2.5906 1.7937 -0.8503 5 6 1.8071 2.2349 1.0856 6 7 1.2313 1.7480 2.1631 7 14 2.3079 4.0336 1.0260 8 1 1.9500 4.6898 2.3091 9 1 3.7741 4.1323 0.8120 10 1 1.5982 4.7082 -0.0905 11 6 2.0539 -0.7454 -1.2463 12 6 2.3705 -2.1556 -0.6780 13 6 2.8437 -1.7966 0.7531 14 1 3.8930 -1.5016 0.7418 15 6 2.6402 -2.9669 1.6805 16 6 1.4926 -3.0504 2.4466 17 6 1.3061 -4.1234 3.2976 18 6 2.2668 -5.1141 3.3828 19 6 3.4140 -5.0323 2.6166 20 6 3.5991 -3.9606 1.7609 21 17 5.0368 -3.8605 0.7932 22 8 2.0159 -0.6916 1.1564 23 1 -0.3633 0.5790 -0.8490 24 1 -0.3633 -1.0248 -0.0770 25 1 -0.3633 0.4457 0.9259 26 1 0.9066 0.8340 2.1686 27 1 1.2847 -0.8014 -2.0166 28 1 2.9543 -0.2687 -1.6336 29 1 1.4763 -2.7784 -0.6513 30 1 3.1663 -2.6383 -1.2453 31 1 0.7420 -2.2767 2.3808 32 1 0.4096 -4.1881 3.8963 33 1 2.1207 -5.9521 4.0482 34 1 4.1641 -5.8063 2.6829 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309378448.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:15 Heat of formation + Delta-G solvation = -36.719915 kcal Electronic energy + Delta-G solvation = -18430.326725 eV Core-core repulsion = 15546.499637 eV Total energy + Delta-G solvation = -2883.827088 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.59418 -38.08939 -36.25802 -33.45222 -31.35614 -31.27311 -30.50270 -28.80182 -25.41306 -24.47840 -22.45356 -22.00388 -20.38925 -19.58115 -17.12263 -16.94088 -15.88565 -15.34078 -14.43242 -14.07802 -13.84086 -13.67660 -13.55764 -13.48926 -12.69572 -12.24235 -12.08120 -11.87051 -11.42321 -11.27647 -11.26187 -10.93686 -10.85880 -10.69583 -10.58766 -10.44915 -10.24543 -10.01400 -9.74639 -9.03986 -8.67003 -8.44857 -8.36256 -7.85417 -6.22939 -4.04367 1.31812 1.46804 2.30858 3.46763 3.48128 3.66858 3.80476 4.57148 4.65640 4.94861 5.11713 5.16590 5.38078 5.45022 5.51827 5.61479 5.64986 5.88311 5.99476 6.12761 6.14215 6.25930 6.37769 6.39934 6.48391 6.60381 6.66183 6.68535 6.78895 6.87950 7.00446 7.03887 7.55796 8.21402 8.27773 8.61359 8.99946 9.78603 11.16475 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.024159 B = 0.006355 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.723954 B = 4405.055865 C = 4678.616034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.211 3.789 3 C -0.614 4.614 4 H 0.051 0.949 5 C 0.036 3.964 6 N -0.892 5.892 7 Si 1.062 2.938 8 H -0.283 1.283 9 H -0.289 1.289 10 H -0.288 1.288 11 C -0.132 4.132 12 C -0.143 4.143 13 C 0.117 3.883 14 H 0.074 0.926 15 C -0.062 4.062 16 C -0.081 4.081 17 C -0.119 4.119 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.034 4.034 21 Cl -0.075 7.075 22 O -0.361 6.361 23 H 0.049 0.951 24 H 0.021 0.979 25 H 0.061 0.939 26 H 0.286 0.714 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.141 0.859 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.858 -12.866 -0.819 13.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.174 3.826 3 C -0.652 4.652 4 H 0.070 0.930 5 C -0.173 4.173 6 N -0.528 5.528 7 Si 0.891 3.109 8 H -0.208 1.208 9 H -0.216 1.216 10 H -0.215 1.215 11 C -0.170 4.170 12 C -0.181 4.181 13 C 0.059 3.941 14 H 0.091 0.909 15 C -0.063 4.063 16 C -0.099 4.099 17 C -0.137 4.137 18 C -0.138 4.138 19 C -0.136 4.136 20 C -0.060 4.060 21 Cl -0.046 7.046 22 O -0.281 6.281 23 H 0.068 0.932 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.159 0.841 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.986 -11.418 0.208 11.591 hybrid contribution 0.218 -1.486 -1.218 1.934 sum 2.204 -12.904 -1.010 13.129 Atomic orbital electron populations 1.22090 0.97877 0.97892 1.01997 1.19891 0.90398 0.91521 0.80811 1.22078 1.41308 0.95283 1.06495 0.93038 1.25674 0.94584 1.04886 0.92106 1.70664 1.34936 1.20031 1.27141 0.83665 0.76175 0.75187 0.75889 1.20823 1.21568 1.21505 1.23110 1.01083 0.93523 0.99280 1.23177 1.00776 0.98363 0.95760 1.21577 0.96487 0.85513 0.90543 0.90887 1.20041 0.93309 0.94974 0.97990 1.21166 0.97038 0.97560 0.94154 1.21282 0.99371 0.94267 0.98816 1.21024 0.93815 0.99374 0.99607 1.20913 0.98693 0.97357 0.96624 1.20728 0.89612 0.97758 0.97924 1.98344 1.37737 1.98039 1.70507 1.88662 1.65887 1.40643 1.32956 0.93199 0.96039 0.92027 0.90038 0.92046 0.91341 0.91561 0.91261 0.84105 0.85644 0.85597 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.40 37.16 0.31 -2.94 16 2 C 0.21 5.17 0.78 -91.04 -0.07 5.10 16 3 C -0.61 -17.06 8.16 -34.44 -0.28 -17.34 16 4 H 0.05 1.42 7.58 -52.49 -0.40 1.03 16 5 C 0.04 1.03 5.25 -17.82 -0.09 0.94 16 6 N -0.89 -26.70 13.02 55.43 0.72 -25.98 16 7 Si 1.06 25.18 29.91 -169.99 -5.08 20.09 16 8 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 9 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 C -0.13 -2.74 6.07 -24.79 -0.15 -2.89 16 12 C -0.14 -2.63 6.56 -24.48 -0.16 -2.79 16 13 C 0.12 2.42 3.12 -26.86 -0.08 2.33 16 14 H 0.07 1.58 7.28 -51.93 -0.38 1.20 16 15 C -0.06 -1.13 5.11 -104.59 -0.53 -1.66 16 16 C -0.08 -1.40 9.38 -39.59 -0.37 -1.77 16 17 C -0.12 -1.66 10.05 -39.58 -0.40 -2.05 16 18 C -0.12 -1.49 10.05 -39.59 -0.40 -1.89 16 19 C -0.12 -1.56 9.83 -39.55 -0.39 -1.95 16 20 C -0.03 -0.53 6.31 -39.50 -0.25 -0.78 16 21 Cl -0.08 -1.12 27.48 -51.86 -1.42 -2.55 16 22 O -0.36 -8.95 7.29 -35.23 -0.26 -9.20 16 23 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 1.54 6.15 -51.93 -0.32 1.22 16 26 H 0.29 8.49 4.70 -40.82 -0.19 8.30 16 27 H 0.06 1.16 7.82 -51.93 -0.41 0.76 16 28 H 0.07 1.44 7.69 -51.93 -0.40 1.04 16 29 H 0.07 1.17 8.05 -51.93 -0.42 0.75 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.14 2.64 7.28 -52.49 -0.38 2.26 16 32 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 293.23 15.07 4.42 4.42 Total: -1.00 -30.20 293.23 -8.72 -38.92 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -4.23 Total: 2.00 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: -2.87 Total: -27.70 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.72 Total: -25.98 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.26 Total: -9.20 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.08 Total: 20.09 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.42 Total: -2.55 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.20 -8.72 -38.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309378448.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.201 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds