Wall clock time and date at job start Mon Mar 30 2020 07:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.86989 * 2 1 4 4 H 1.07999 * 119.99988 * 120.70011 * 3 2 1 5 5 C 1.37885 * 120.00047 * 300.70191 * 3 2 1 6 6 N 1.31518 * 119.99792 * 359.72305 * 5 3 2 7 7 Si 1.86795 * 120.00009 * 180.02562 * 5 3 2 8 8 H 1.48503 * 109.47163 * 59.99902 * 7 5 3 9 9 H 1.48495 * 109.47159 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47290 * 299.99897 * 7 5 3 11 11 C 1.54098 * 109.87651 * 121.00823 * 2 1 3 12 12 C 1.55131 * 104.03250 * 117.58922 * 11 2 1 13 13 C 1.54994 * 102.09309 * 339.00186 * 12 11 2 14 14 H 1.09004 * 110.62205 * 278.60656 * 13 12 11 15 15 C 1.50703 * 110.61947 * 155.60979 * 13 12 11 16 16 C 1.38236 * 120.00769 * 269.20097 * 15 13 12 17 17 C 1.38222 * 120.01611 * 179.74834 * 16 15 13 18 18 C 1.38268 * 120.02184 * 0.54569 * 17 16 15 19 19 C 1.38183 * 120.01368 * 359.70682 * 18 17 16 20 20 C 1.38334 * 120.00929 * 89.47311 * 15 13 12 21 21 Cl 1.73604 * 120.01208 * 0.02562 * 20 15 13 22 22 O 1.43738 * 109.87548 * 238.99682 * 2 1 3 23 23 H 1.09000 * 109.46946 * 59.29826 * 1 2 3 24 24 H 1.08996 * 109.47184 * 179.30016 * 1 2 3 25 25 H 1.09003 * 109.47259 * 299.30247 * 1 2 3 26 26 H 0.97000 * 119.99468 * 179.97438 * 6 5 3 27 27 H 1.09000 * 110.48428 * 236.21712 * 11 2 1 28 28 H 1.09002 * 110.49041 * 358.86410 * 11 2 1 29 29 H 1.08996 * 110.83649 * 220.83440 * 12 11 2 30 30 H 1.09000 * 111.00802 * 97.24567 * 12 11 2 31 31 H 1.08008 * 119.99369 * 359.97438 * 16 15 13 32 32 H 1.07999 * 119.98660 * 180.25416 * 17 16 15 33 33 H 1.07998 * 119.98713 * 179.72809 * 18 17 16 34 34 H 1.08008 * 120.00734 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0422 1.4173 0.0000 4 1 2.6749 1.7628 0.8042 5 6 1.7032 2.2729 -1.0267 6 7 0.9372 1.8505 -2.0089 7 14 2.3387 4.0294 -1.0271 8 1 3.8236 4.0186 -1.0446 9 1 1.8351 4.7378 -2.2311 10 1 1.8631 4.7282 0.1940 11 6 2.0540 -0.7466 1.2421 12 6 2.8373 -1.9500 0.6550 13 6 2.2314 -2.0695 -0.7666 14 1 1.2858 -2.6109 -0.7366 15 6 3.2014 -2.7443 -1.7019 16 6 4.0993 -1.9872 -2.4308 17 6 4.9925 -2.6063 -3.2849 18 6 4.9809 -3.9824 -3.4191 19 6 4.0802 -4.7399 -2.6950 20 6 3.1896 -4.1211 -1.8356 21 17 2.0570 -5.0721 -0.9263 22 8 2.0187 -0.6963 -1.1586 23 1 -0.3633 0.5247 -0.8836 24 1 -0.3633 -1.0275 -0.0126 25 1 -0.3634 0.5030 0.8962 26 1 0.6984 2.4525 -2.7309 27 1 2.7176 -0.1045 1.8213 28 1 1.2237 -1.0929 1.8575 29 1 2.6508 -2.8540 1.2346 30 1 3.9048 -1.7349 0.6060 31 1 4.1055 -0.9118 -2.3303 32 1 5.6966 -2.0146 -3.8510 33 1 5.6761 -4.4652 -4.0899 34 1 4.0715 -5.8149 -2.7996 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309378450.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:24 Heat of formation + Delta-G solvation = -31.711855 kcal Electronic energy + Delta-G solvation = -18333.949198 eV Core-core repulsion = 15450.339275 eV Total energy + Delta-G solvation = -2883.609922 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -39.44425 -37.90733 -36.20658 -33.22505 -31.42903 -30.98859 -30.40693 -28.78883 -25.51920 -24.66570 -22.37100 -21.96226 -20.15120 -19.31574 -17.10676 -16.47667 -15.63208 -15.18558 -14.63805 -14.20819 -13.83249 -13.49595 -13.43392 -13.18935 -12.68968 -12.46799 -11.97323 -11.63365 -11.32305 -11.23972 -11.15004 -10.88745 -10.80962 -10.64027 -10.47590 -10.37654 -10.21359 -9.82693 -9.55258 -9.08740 -8.60948 -8.51970 -8.39881 -7.95500 -5.96453 -4.12622 1.39221 1.55206 2.36032 3.30945 3.36194 3.38301 3.88976 4.41184 4.76209 5.02349 5.19564 5.26087 5.45901 5.52571 5.63631 5.72340 5.76513 5.97612 6.09062 6.22251 6.30743 6.38212 6.50430 6.60146 6.69536 6.75333 6.81058 6.89704 6.92297 7.11073 7.17611 7.30043 7.77479 8.12114 8.34793 8.55468 9.00031 9.57605 11.05594 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.024252 B = 0.006604 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.251564 B = 4238.905950 C = 4932.768138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.226 3.774 3 C -0.523 4.523 4 H 0.061 0.939 5 C 0.080 3.920 6 N -0.859 5.859 7 Si 0.888 3.112 8 H -0.276 1.276 9 H -0.287 1.287 10 H -0.276 1.276 11 C -0.141 4.141 12 C -0.138 4.138 13 C 0.100 3.900 14 H 0.067 0.933 15 C -0.054 4.054 16 C -0.076 4.076 17 C -0.121 4.121 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.034 4.034 21 Cl -0.078 7.078 22 O -0.336 6.336 23 H 0.090 0.910 24 H 0.010 0.990 25 H 0.035 0.965 26 H 0.260 0.740 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.147 0.853 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.327 -11.165 -0.301 12.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.189 3.811 3 C -0.561 4.561 4 H 0.079 0.921 5 C -0.125 4.125 6 N -0.495 5.495 7 Si 0.716 3.284 8 H -0.202 1.202 9 H -0.212 1.212 10 H -0.202 1.202 11 C -0.178 4.178 12 C -0.175 4.175 13 C 0.041 3.959 14 H 0.084 0.916 15 C -0.055 4.055 16 C -0.094 4.094 17 C -0.139 4.139 18 C -0.138 4.138 19 C -0.138 4.138 20 C -0.060 4.060 21 Cl -0.049 7.049 22 O -0.255 6.255 23 H 0.108 0.892 24 H 0.029 0.971 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.164 0.836 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.157 -11.094 -0.599 12.249 hybrid contribution 0.172 0.699 0.196 0.746 sum 5.329 -10.395 -0.403 11.688 Atomic orbital electron populations 1.22169 0.98224 0.97561 1.02755 1.19651 0.90593 0.90837 0.80034 1.21034 1.32725 0.93718 1.08606 0.92101 1.25028 0.94197 0.98167 0.95157 1.69959 1.34334 1.35159 1.10058 0.86739 0.79421 0.84823 0.77434 1.20186 1.21231 1.20195 1.23134 0.98820 0.95951 0.99935 1.23070 1.00297 0.98463 0.95718 1.21768 0.94445 0.88761 0.90938 0.91562 1.19810 0.97137 0.90852 0.97720 1.21262 0.92722 1.01681 0.93782 1.21296 0.99157 0.94594 0.98848 1.21013 0.98970 0.94055 0.99802 1.20882 0.95902 1.00035 0.96989 1.20744 0.95557 0.91264 0.98485 1.98337 1.60788 1.71915 1.73841 1.89279 1.85858 1.14750 1.35662 0.89166 0.97099 0.94593 0.92972 0.91466 0.92793 0.92041 0.91488 0.83553 0.85700 0.85702 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 8.38 37.16 0.31 -3.34 16 2 C 0.23 5.61 0.74 -91.20 -0.07 5.55 16 3 C -0.52 -14.17 8.26 -34.44 -0.28 -14.45 16 4 H 0.06 1.62 7.33 -52.49 -0.38 1.23 16 5 C 0.08 2.18 5.26 -17.82 -0.09 2.09 16 6 N -0.86 -24.33 10.94 55.43 0.61 -23.72 16 7 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 8 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 9 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 C -0.14 -2.94 6.29 -25.03 -0.16 -3.10 16 12 C -0.14 -2.61 6.59 -24.55 -0.16 -2.77 16 13 C 0.10 2.05 3.03 -26.83 -0.08 1.97 16 14 H 0.07 1.38 7.13 -51.93 -0.37 1.01 16 15 C -0.05 -1.00 5.12 -104.59 -0.54 -1.54 16 16 C -0.08 -1.37 9.38 -39.59 -0.37 -1.74 16 17 C -0.12 -1.74 10.05 -39.58 -0.40 -2.13 16 18 C -0.12 -1.53 10.05 -39.59 -0.40 -1.93 16 19 C -0.12 -1.62 9.83 -39.55 -0.39 -2.01 16 20 C -0.03 -0.54 6.31 -39.50 -0.25 -0.79 16 21 Cl -0.08 -1.16 27.41 -51.86 -1.42 -2.58 16 22 O -0.34 -8.45 8.93 -35.23 -0.31 -8.76 16 23 H 0.09 2.44 6.04 -51.93 -0.31 2.13 16 24 H 0.01 0.23 8.13 -51.93 -0.42 -0.19 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.07 1.39 7.40 -51.93 -0.38 1.01 16 28 H 0.05 1.04 7.70 -51.93 -0.40 0.64 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.25 8.05 -51.93 -0.42 0.84 16 31 H 0.15 2.93 7.36 -52.48 -0.39 2.54 16 32 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 295.31 15.07 4.45 4.45 Total: -1.00 -28.64 295.31 -8.90 -37.55 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -4.33 Total: 1.39 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -2.87 Total: -24.19 kcal Atomic # 7 Polarization: -24.33 SS G_CDS: 0.61 Total: -23.72 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.31 Total: -8.76 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.42 Total: -2.58 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.64 -8.90 -37.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309378450.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.836 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds