Wall clock time and date at job start Mon Mar 30 2020 07:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.86989 * 2 1 4 4 H 1.07999 * 119.99988 * 120.70011 * 3 2 1 5 5 C 1.37885 * 120.00047 * 300.70191 * 3 2 1 6 6 N 1.31518 * 119.99792 * 359.72305 * 5 3 2 7 7 Si 1.86795 * 120.00009 * 180.02562 * 5 3 2 8 8 H 1.48503 * 109.47163 * 59.99902 * 7 5 3 9 9 H 1.48495 * 109.47159 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47290 * 299.99897 * 7 5 3 11 11 C 1.54098 * 109.87651 * 121.00823 * 2 1 3 12 12 C 1.55131 * 104.03250 * 117.58922 * 11 2 1 13 13 C 1.54994 * 102.09309 * 339.00186 * 12 11 2 14 14 H 1.09004 * 110.62205 * 278.60656 * 13 12 11 15 15 C 1.50703 * 110.61947 * 155.60979 * 13 12 11 16 16 C 1.38236 * 120.00769 * 269.20097 * 15 13 12 17 17 C 1.38222 * 120.01611 * 179.74834 * 16 15 13 18 18 C 1.38268 * 120.02184 * 0.54569 * 17 16 15 19 19 C 1.38183 * 120.01368 * 359.70682 * 18 17 16 20 20 C 1.38334 * 120.00929 * 89.47311 * 15 13 12 21 21 Cl 1.73604 * 120.01208 * 0.02562 * 20 15 13 22 22 O 1.43738 * 109.87548 * 238.99682 * 2 1 3 23 23 H 1.09000 * 109.46946 * 59.29826 * 1 2 3 24 24 H 1.08996 * 109.47184 * 179.30016 * 1 2 3 25 25 H 1.09003 * 109.47259 * 299.30247 * 1 2 3 26 26 H 0.97000 * 119.99468 * 179.97438 * 6 5 3 27 27 H 1.09000 * 110.48428 * 236.21712 * 11 2 1 28 28 H 1.09002 * 110.49041 * 358.86410 * 11 2 1 29 29 H 1.08996 * 110.83649 * 220.83440 * 12 11 2 30 30 H 1.09000 * 111.00802 * 97.24567 * 12 11 2 31 31 H 1.08008 * 119.99369 * 359.97438 * 16 15 13 32 32 H 1.07999 * 119.98660 * 180.25416 * 17 16 15 33 33 H 1.07998 * 119.98713 * 179.72809 * 18 17 16 34 34 H 1.08008 * 120.00734 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0422 1.4173 0.0000 4 1 2.6749 1.7628 0.8042 5 6 1.7032 2.2729 -1.0267 6 7 0.9372 1.8505 -2.0089 7 14 2.3387 4.0294 -1.0271 8 1 3.8236 4.0186 -1.0446 9 1 1.8351 4.7378 -2.2311 10 1 1.8631 4.7282 0.1940 11 6 2.0540 -0.7466 1.2421 12 6 2.8373 -1.9500 0.6550 13 6 2.2314 -2.0695 -0.7666 14 1 1.2858 -2.6109 -0.7366 15 6 3.2014 -2.7443 -1.7019 16 6 4.0993 -1.9872 -2.4308 17 6 4.9925 -2.6063 -3.2849 18 6 4.9809 -3.9824 -3.4191 19 6 4.0802 -4.7399 -2.6950 20 6 3.1896 -4.1211 -1.8356 21 17 2.0570 -5.0721 -0.9263 22 8 2.0187 -0.6963 -1.1586 23 1 -0.3633 0.5247 -0.8836 24 1 -0.3633 -1.0275 -0.0126 25 1 -0.3634 0.5030 0.8962 26 1 0.6984 2.4525 -2.7309 27 1 2.7176 -0.1045 1.8213 28 1 1.2237 -1.0929 1.8575 29 1 2.6508 -2.8540 1.2346 30 1 3.9048 -1.7349 0.6060 31 1 4.1055 -0.9118 -2.3303 32 1 5.6966 -2.0146 -3.8510 33 1 5.6761 -4.4652 -4.0899 34 1 4.0715 -5.8149 -2.7996 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309378450.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:20 Heat of formation + Delta-G solvation = -46.321163 kcal Electronic energy + Delta-G solvation = -18334.582705 eV Core-core repulsion = 15450.339275 eV Total energy + Delta-G solvation = -2884.243429 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -40.85444 -39.43652 -37.37611 -35.10363 -32.99503 -32.73206 -31.59963 -30.44199 -27.46216 -26.36694 -23.60283 -23.38660 -21.61578 -21.15896 -18.81537 -17.90864 -17.13834 -16.68746 -16.33278 -15.66879 -15.41156 -14.96416 -14.80694 -14.65593 -14.23810 -14.15726 -13.69017 -13.20488 -12.93224 -12.76794 -12.59439 -12.46600 -12.33865 -12.28972 -12.19759 -11.92062 -11.90203 -11.54834 -11.24087 -10.95771 -10.57791 -9.99133 -9.74388 -9.52477 -8.02565 -6.25525 0.21425 0.36778 1.17657 1.42626 1.43556 1.50996 2.43766 2.69814 3.08290 3.51783 3.81215 3.92926 4.08377 4.15283 4.21152 4.35931 4.44657 4.63075 4.67756 4.74756 4.81287 4.89947 5.00114 5.04846 5.07296 5.21100 5.22661 5.33248 5.39888 5.52912 5.61951 5.68888 5.93308 6.11288 6.35241 6.60859 7.05752 7.48672 8.98411 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.024252 B = 0.006604 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.251564 B = 4238.905950 C = 4932.768138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.212 3.788 3 C -0.543 4.543 4 H 0.058 0.942 5 C 0.033 3.967 6 N -0.888 5.888 7 Si 0.949 3.051 8 H -0.274 1.274 9 H -0.285 1.285 10 H -0.268 1.268 11 C -0.137 4.137 12 C -0.126 4.126 13 C 0.098 3.902 14 H 0.060 0.940 15 C -0.081 4.081 16 C -0.103 4.103 17 C -0.118 4.118 18 C -0.104 4.104 19 C -0.112 4.112 20 C -0.043 4.043 21 Cl -0.072 7.072 22 O -0.367 6.367 23 H 0.059 0.941 24 H 0.024 0.976 25 H 0.041 0.959 26 H 0.258 0.742 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.148 0.852 33 H 0.169 0.831 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.823 -12.898 -0.546 14.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.174 3.826 3 C -0.580 4.580 4 H 0.076 0.924 5 C -0.169 4.169 6 N -0.525 5.525 7 Si 0.775 3.225 8 H -0.199 1.199 9 H -0.210 1.210 10 H -0.193 1.193 11 C -0.175 4.175 12 C -0.163 4.163 13 C 0.040 3.960 14 H 0.077 0.923 15 C -0.082 4.082 16 C -0.122 4.122 17 C -0.135 4.135 18 C -0.122 4.122 19 C -0.130 4.130 20 C -0.070 4.070 21 Cl -0.043 7.043 22 O -0.287 6.287 23 H 0.078 0.922 24 H 0.043 0.957 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.128 0.872 32 H 0.166 0.834 33 H 0.187 0.813 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.656 -12.833 -0.830 14.480 hybrid contribution -0.275 1.144 0.238 1.200 sum 6.381 -11.689 -0.592 13.330 Atomic orbital electron populations 1.22053 0.98523 0.97933 1.01473 1.19742 0.90546 0.90643 0.81664 1.21408 1.32581 0.95473 1.08563 0.92403 1.25749 0.94411 1.01921 0.94860 1.70111 1.35553 1.36280 1.10600 0.85771 0.78792 0.80358 0.77594 1.19901 1.21037 1.19312 1.23049 0.99507 0.96383 0.98566 1.22994 0.99706 0.98576 0.95057 1.21841 0.95023 0.86676 0.92459 0.92266 1.19691 0.97666 0.92092 0.98743 1.21089 0.94854 1.00142 0.96103 1.21557 0.98342 0.95921 0.97724 1.21494 0.98587 0.93064 0.99067 1.21326 0.94570 1.01737 0.95394 1.20860 0.96399 0.90422 0.99278 1.98335 1.60746 1.71383 1.73834 1.89207 1.85993 1.17299 1.36230 0.92209 0.95734 0.94016 0.93274 0.91676 0.91192 0.89494 0.91689 0.87163 0.83413 0.81337 0.82299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.10 8.38 71.98 0.60 -6.50 16 2 C 0.21 10.74 0.74 -11.17 -0.01 10.73 16 3 C -0.54 -30.11 8.26 25.60 0.21 -29.90 16 4 H 0.06 3.14 7.33 -2.91 -0.02 3.11 16 5 C 0.03 1.84 5.26 84.66 0.45 2.29 16 6 N -0.89 -52.06 10.94 21.45 0.23 -51.83 16 7 Si 0.95 43.69 29.54 68.60 2.03 45.71 16 8 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 9 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 C -0.14 -5.74 6.29 31.70 0.20 -5.54 16 12 C -0.13 -4.71 6.59 32.01 0.21 -4.50 16 13 C 0.10 4.09 3.03 30.53 0.09 4.18 16 14 H 0.06 2.49 7.13 -2.38 -0.02 2.47 16 15 C -0.08 -2.98 5.12 -19.84 -0.10 -3.08 16 16 C -0.10 -3.75 9.38 22.27 0.21 -3.54 16 17 C -0.12 -3.14 10.05 22.27 0.22 -2.92 16 18 C -0.10 -2.22 10.05 22.26 0.22 -2.00 16 19 C -0.11 -2.62 9.83 22.29 0.22 -2.40 16 20 C -0.04 -1.30 6.31 22.32 0.14 -1.16 16 21 Cl -0.07 -2.01 27.41 -2.72 -0.07 -2.09 16 22 O -0.37 -19.14 8.93 -148.98 -1.33 -20.47 16 23 H 0.06 3.35 6.04 -2.39 -0.01 3.34 16 24 H 0.02 1.10 8.13 -2.39 -0.02 1.08 16 25 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 27 H 0.06 2.70 7.40 -2.39 -0.02 2.68 16 28 H 0.07 2.64 7.70 -2.39 -0.02 2.62 16 29 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.06 2.43 8.05 -2.39 -0.02 2.41 16 31 H 0.11 4.72 7.36 -2.91 -0.02 4.70 16 32 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 33 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -63.82 295.31 4.62 -59.20 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 1.09 Total: 13.80 kcal Atomic # 6 Polarization: -46.99 SS G_CDS: 2.67 Total: -44.32 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.23 Total: -51.83 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -1.33 Total: -20.47 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -0.07 Total: -2.09 kcal Total: -63.82 4.62 -59.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309378450.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.881 kcal (2) G-P(sol) polarization free energy of solvation -63.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds