Wall clock time and date at job start Mon Mar 30 2020 07:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.86914 * 2 1 4 4 H 1.08002 * 119.99660 * 245.21784 * 3 2 1 5 5 C 1.37880 * 120.00409 * 65.22533 * 3 2 1 6 6 N 1.31515 * 119.99665 * 5.51173 * 5 3 2 7 7 Si 1.86796 * 120.00035 * 185.51390 * 5 3 2 8 8 H 1.48495 * 109.47159 * 84.99651 * 7 5 3 9 9 H 1.48500 * 109.47123 * 204.99676 * 7 5 3 10 10 H 1.48501 * 109.47289 * 324.99154 * 7 5 3 11 11 C 1.54097 * 109.87810 * 238.98703 * 2 1 3 12 12 C 1.54806 * 104.19055 * 242.60850 * 11 2 1 13 13 C 1.54990 * 102.09098 * 20.88181 * 12 11 2 14 14 H 1.09007 * 110.61954 * 81.47774 * 13 12 11 15 15 C 1.50702 * 110.62086 * 204.31765 * 13 12 11 16 16 C 1.38235 * 120.00614 * 94.72173 * 15 13 12 17 17 C 1.38220 * 120.01127 * 179.76982 * 16 15 13 18 18 C 1.38262 * 120.02785 * 0.50850 * 17 16 15 19 19 C 1.38200 * 120.01319 * 359.74993 * 18 17 16 20 20 C 1.38336 * 120.00779 * 275.00297 * 15 13 12 21 21 Cl 1.73607 * 120.00906 * 359.95225 * 20 15 13 22 22 O 1.43748 * 109.87355 * 121.16073 * 2 1 3 23 23 H 1.08997 * 109.47567 * 175.82404 * 1 2 3 24 24 H 1.08999 * 109.47264 * 295.82737 * 1 2 3 25 25 H 1.09008 * 109.46917 * 55.82621 * 1 2 3 26 26 H 0.96999 * 119.99786 * 180.02562 * 6 5 3 27 27 H 1.09001 * 110.49188 * 1.28833 * 11 2 1 28 28 H 1.09003 * 110.48179 * 123.93282 * 11 2 1 29 29 H 1.08997 * 110.90829 * 139.08204 * 12 11 2 30 30 H 1.09003 * 110.90948 * 262.64856 * 12 11 2 31 31 H 1.07994 * 119.99315 * 0.02562 * 16 15 13 32 32 H 1.08003 * 119.98671 * 180.23281 * 17 16 15 33 33 H 1.07997 * 120.00006 * 179.76333 * 18 17 16 34 34 H 1.07995 * 120.00987 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0422 1.4173 0.0000 4 1 2.5944 1.7918 -0.8492 5 6 1.8060 2.2358 1.0841 6 7 1.2296 1.7497 2.1617 7 14 2.3045 4.0349 1.0223 8 1 1.2282 4.8247 0.3718 9 1 2.5208 4.5364 2.4032 10 1 3.5608 4.1740 0.2428 11 6 2.0540 -0.7467 -1.2420 12 6 2.8324 -1.9516 -0.6601 13 6 2.2280 -2.0724 0.7620 14 1 1.2811 -2.6118 0.7322 15 6 3.1961 -2.7543 1.6940 16 6 4.0432 -1.9998 2.4840 17 6 4.9279 -2.6251 3.3423 18 6 4.9736 -4.0056 3.4037 19 6 4.1309 -4.7611 2.6106 20 6 3.2414 -4.1356 1.7550 21 17 2.1821 -5.0839 0.7587 22 8 2.0187 -0.6995 1.1568 23 1 -0.3634 -1.0249 -0.0748 24 1 -0.3634 0.4477 0.9250 25 1 -0.3633 0.5773 -0.8503 26 1 1.0631 2.3256 2.9243 27 1 1.2238 -1.0907 -1.8588 28 1 2.7197 -0.1055 -1.8198 29 1 2.6431 -2.8542 -1.2411 30 1 3.9003 -1.7386 -0.6126 31 1 4.0108 -0.9215 2.4335 32 1 5.5869 -2.0351 3.9621 33 1 5.6677 -4.4937 4.0718 34 1 4.1664 -5.8394 2.6589 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309378451.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:29 Heat of formation + Delta-G solvation = -31.910777 kcal Electronic energy + Delta-G solvation = -18357.168122 eV Core-core repulsion = 15473.549573 eV Total energy + Delta-G solvation = -2883.618548 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.42456 -37.89692 -36.19061 -33.15996 -31.40942 -31.00340 -30.37480 -28.85340 -25.50565 -24.65484 -22.33682 -21.95365 -20.13683 -19.31012 -17.09024 -16.46084 -15.59547 -15.16354 -14.60837 -14.21376 -13.81517 -13.46978 -13.41319 -13.18563 -12.67004 -12.45167 -11.91934 -11.62628 -11.34927 -11.30124 -11.13582 -10.88073 -10.78682 -10.71378 -10.45810 -10.35910 -10.20509 -9.82326 -9.57936 -9.03358 -8.58088 -8.51246 -8.39012 -7.94504 -5.95859 -4.09748 1.41616 1.57944 2.37561 3.30469 3.37511 3.39681 3.91833 4.42597 4.77960 5.04454 5.22451 5.28795 5.46052 5.53794 5.66179 5.74457 5.77396 5.99908 6.10835 6.23477 6.33039 6.39505 6.52301 6.57928 6.71161 6.78172 6.81571 6.86938 6.89940 7.13202 7.15433 7.24151 7.77930 7.99077 8.34639 8.53473 9.03035 9.59402 11.08250 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.024479 B = 0.006658 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.546836 B = 4204.233513 C = 4929.474889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.227 3.773 3 C -0.528 4.528 4 H 0.062 0.938 5 C 0.081 3.919 6 N -0.854 5.854 7 Si 0.885 3.115 8 H -0.279 1.279 9 H -0.287 1.287 10 H -0.274 1.274 11 C -0.141 4.141 12 C -0.137 4.137 13 C 0.099 3.901 14 H 0.065 0.935 15 C -0.054 4.054 16 C -0.075 4.075 17 C -0.121 4.121 18 C -0.121 4.121 19 C -0.120 4.120 20 C -0.034 4.034 21 Cl -0.079 7.079 22 O -0.326 6.326 23 H 0.013 0.987 24 H 0.074 0.926 25 H 0.039 0.961 26 H 0.259 0.741 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.149 0.851 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.811 -11.090 0.020 12.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.189 3.811 3 C -0.565 4.565 4 H 0.080 0.920 5 C -0.125 4.125 6 N -0.489 5.489 7 Si 0.713 3.287 8 H -0.205 1.205 9 H -0.212 1.212 10 H -0.199 1.199 11 C -0.179 4.179 12 C -0.175 4.175 13 C 0.040 3.960 14 H 0.083 0.917 15 C -0.055 4.055 16 C -0.093 4.093 17 C -0.139 4.139 18 C -0.139 4.139 19 C -0.139 4.139 20 C -0.061 4.061 21 Cl -0.050 7.050 22 O -0.245 6.245 23 H 0.032 0.968 24 H 0.092 0.908 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.166 0.834 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.674 -11.031 0.325 11.985 hybrid contribution 0.091 0.743 -0.223 0.781 sum 4.764 -10.289 0.101 11.339 Atomic orbital electron populations 1.22110 0.98586 0.97240 1.02244 1.19647 0.90238 0.91033 0.80188 1.21038 1.37762 0.94265 1.03454 0.91978 1.25022 0.94316 0.97982 0.95211 1.70072 1.40463 1.34777 1.03582 0.86742 0.79053 0.85725 0.77217 1.20546 1.21248 1.19945 1.23082 0.98856 0.96009 0.99926 1.23011 1.00345 0.98387 0.95745 1.21757 0.94391 0.88955 0.90926 0.91721 1.19806 0.97247 0.90779 0.97668 1.21293 0.92775 1.01925 0.93324 1.21300 0.99097 0.94518 0.98991 1.21013 0.99336 0.94044 0.99498 1.20873 0.96274 0.99970 0.96752 1.20732 0.96593 0.91151 0.97617 1.98335 1.65455 1.72151 1.69044 1.89327 1.85781 1.14345 1.35061 0.96838 0.90757 0.94169 0.93147 0.92888 0.91456 0.92022 0.91509 0.83356 0.85727 0.85742 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.39 37.16 0.31 -3.14 16 2 C 0.23 5.59 0.74 -91.20 -0.07 5.52 16 3 C -0.53 -14.24 8.21 -34.44 -0.28 -14.52 16 4 H 0.06 1.65 7.37 -52.49 -0.39 1.26 16 5 C 0.08 2.20 5.25 -17.82 -0.09 2.10 16 6 N -0.85 -24.17 11.29 55.43 0.63 -23.55 16 7 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 8 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 9 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 C -0.14 -2.94 6.26 -25.21 -0.16 -3.10 16 12 C -0.14 -2.60 6.57 -24.73 -0.16 -2.77 16 13 C 0.10 2.03 2.94 -26.83 -0.08 1.95 16 14 H 0.07 1.34 7.32 -51.93 -0.38 0.96 16 15 C -0.05 -1.00 5.14 -104.59 -0.54 -1.54 16 16 C -0.08 -1.36 9.39 -39.59 -0.37 -1.74 16 17 C -0.12 -1.77 10.05 -39.58 -0.40 -2.16 16 18 C -0.12 -1.56 10.05 -39.59 -0.40 -1.95 16 19 C -0.12 -1.64 9.83 -39.55 -0.39 -2.03 16 20 C -0.03 -0.55 6.31 -39.50 -0.25 -0.80 16 21 Cl -0.08 -1.17 27.50 -51.86 -1.43 -2.60 16 22 O -0.33 -8.18 8.40 -35.23 -0.30 -8.47 16 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.07 1.96 6.85 -51.93 -0.36 1.61 16 25 H 0.04 0.91 8.14 -51.92 -0.42 0.48 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.05 1.01 7.70 -51.93 -0.40 0.61 16 28 H 0.07 1.39 7.41 -51.93 -0.38 1.01 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 31 H 0.15 3.05 7.28 -52.49 -0.38 2.67 16 32 H 0.12 1.53 8.06 -52.48 -0.42 1.10 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 296.06 15.07 4.46 4.46 Total: -1.00 -28.56 296.06 -8.91 -37.47 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.38 Total: 1.02 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -2.87 Total: -24.18 kcal Atomic # 7 Polarization: -24.17 SS G_CDS: 0.63 Total: -23.55 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -0.30 Total: -8.47 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.43 Total: -2.60 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.56 -8.91 -37.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309378451.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.562 kcal (2) G-P(sol) polarization free energy of solvation -28.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds