Wall clock time and date at job start Mon Mar 30 2020 07:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.86914 * 2 1 4 4 H 1.08002 * 119.99660 * 245.21784 * 3 2 1 5 5 C 1.37880 * 120.00409 * 65.22533 * 3 2 1 6 6 N 1.31515 * 119.99665 * 5.51173 * 5 3 2 7 7 Si 1.86796 * 120.00035 * 185.51390 * 5 3 2 8 8 H 1.48495 * 109.47159 * 84.99651 * 7 5 3 9 9 H 1.48500 * 109.47123 * 204.99676 * 7 5 3 10 10 H 1.48501 * 109.47289 * 324.99154 * 7 5 3 11 11 C 1.54097 * 109.87810 * 238.98703 * 2 1 3 12 12 C 1.54806 * 104.19055 * 242.60850 * 11 2 1 13 13 C 1.54990 * 102.09098 * 20.88181 * 12 11 2 14 14 H 1.09007 * 110.61954 * 81.47774 * 13 12 11 15 15 C 1.50702 * 110.62086 * 204.31765 * 13 12 11 16 16 C 1.38235 * 120.00614 * 94.72173 * 15 13 12 17 17 C 1.38220 * 120.01127 * 179.76982 * 16 15 13 18 18 C 1.38262 * 120.02785 * 0.50850 * 17 16 15 19 19 C 1.38200 * 120.01319 * 359.74993 * 18 17 16 20 20 C 1.38336 * 120.00779 * 275.00297 * 15 13 12 21 21 Cl 1.73607 * 120.00906 * 359.95225 * 20 15 13 22 22 O 1.43748 * 109.87355 * 121.16073 * 2 1 3 23 23 H 1.08997 * 109.47567 * 175.82404 * 1 2 3 24 24 H 1.08999 * 109.47264 * 295.82737 * 1 2 3 25 25 H 1.09008 * 109.46917 * 55.82621 * 1 2 3 26 26 H 0.96999 * 119.99786 * 180.02562 * 6 5 3 27 27 H 1.09001 * 110.49188 * 1.28833 * 11 2 1 28 28 H 1.09003 * 110.48179 * 123.93282 * 11 2 1 29 29 H 1.08997 * 110.90829 * 139.08204 * 12 11 2 30 30 H 1.09003 * 110.90948 * 262.64856 * 12 11 2 31 31 H 1.07994 * 119.99315 * 0.02562 * 16 15 13 32 32 H 1.08003 * 119.98671 * 180.23281 * 17 16 15 33 33 H 1.07997 * 120.00006 * 179.76333 * 18 17 16 34 34 H 1.07995 * 120.00987 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0422 1.4173 0.0000 4 1 2.5944 1.7918 -0.8492 5 6 1.8060 2.2358 1.0841 6 7 1.2296 1.7497 2.1617 7 14 2.3045 4.0349 1.0223 8 1 1.2282 4.8247 0.3718 9 1 2.5208 4.5364 2.4032 10 1 3.5608 4.1740 0.2428 11 6 2.0540 -0.7467 -1.2420 12 6 2.8324 -1.9516 -0.6601 13 6 2.2280 -2.0724 0.7620 14 1 1.2811 -2.6118 0.7322 15 6 3.1961 -2.7543 1.6940 16 6 4.0432 -1.9998 2.4840 17 6 4.9279 -2.6251 3.3423 18 6 4.9736 -4.0056 3.4037 19 6 4.1309 -4.7611 2.6106 20 6 3.2414 -4.1356 1.7550 21 17 2.1821 -5.0839 0.7587 22 8 2.0187 -0.6995 1.1568 23 1 -0.3634 -1.0249 -0.0748 24 1 -0.3634 0.4477 0.9250 25 1 -0.3633 0.5773 -0.8503 26 1 1.0631 2.3256 2.9243 27 1 1.2238 -1.0907 -1.8588 28 1 2.7197 -0.1055 -1.8198 29 1 2.6431 -2.8542 -1.2411 30 1 3.9003 -1.7386 -0.6126 31 1 4.0108 -0.9215 2.4335 32 1 5.5869 -2.0351 3.9621 33 1 5.6677 -4.4937 4.0718 34 1 4.1664 -5.8394 2.6589 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309378451.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:29 Heat of formation + Delta-G solvation = -46.371903 kcal Electronic energy + Delta-G solvation = -18357.795203 eV Core-core repulsion = 15473.549573 eV Total energy + Delta-G solvation = -2884.245630 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.84291 -39.42589 -37.36611 -35.03143 -33.00386 -32.73457 -31.58621 -30.49671 -27.42385 -26.36865 -23.57164 -23.39888 -21.60248 -21.14502 -18.80500 -17.90079 -17.11154 -16.65263 -16.30992 -15.68815 -15.40121 -14.95948 -14.79538 -14.64621 -14.19388 -14.14623 -13.64844 -13.30686 -12.93872 -12.74938 -12.63879 -12.46542 -12.33086 -12.31750 -12.18820 -11.91804 -11.84956 -11.53261 -11.25989 -10.89118 -10.58697 -9.97926 -9.73347 -9.50755 -8.02263 -6.22517 0.22419 0.37981 1.18346 1.42209 1.43067 1.51837 2.44627 2.71223 3.11105 3.50284 3.81395 3.94933 4.09785 4.16329 4.21238 4.36669 4.45395 4.63455 4.68669 4.74997 4.82358 4.88458 4.99634 5.04260 5.07899 5.21176 5.21869 5.33634 5.36540 5.54177 5.62945 5.71906 5.94375 6.00623 6.35590 6.59669 7.09537 7.50665 9.01075 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.024479 B = 0.006658 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.546836 B = 4204.233513 C = 4929.474889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.211 3.789 3 C -0.546 4.546 4 H 0.058 0.942 5 C 0.034 3.966 6 N -0.883 5.883 7 Si 0.946 3.054 8 H -0.273 1.273 9 H -0.286 1.286 10 H -0.270 1.270 11 C -0.137 4.137 12 C -0.125 4.125 13 C 0.097 3.903 14 H 0.059 0.941 15 C -0.080 4.080 16 C -0.103 4.103 17 C -0.118 4.118 18 C -0.105 4.105 19 C -0.112 4.112 20 C -0.043 4.043 21 Cl -0.071 7.071 22 O -0.357 6.357 23 H 0.030 0.970 24 H 0.042 0.958 25 H 0.046 0.954 26 H 0.256 0.744 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.147 0.853 33 H 0.169 0.831 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.135 -12.895 0.117 14.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.173 3.827 3 C -0.584 4.584 4 H 0.076 0.924 5 C -0.169 4.169 6 N -0.520 5.520 7 Si 0.772 3.228 8 H -0.199 1.199 9 H -0.212 1.212 10 H -0.195 1.195 11 C -0.175 4.175 12 C -0.163 4.163 13 C 0.039 3.961 14 H 0.077 0.923 15 C -0.081 4.081 16 C -0.121 4.121 17 C -0.136 4.136 18 C -0.123 4.123 19 C -0.130 4.130 20 C -0.069 4.069 21 Cl -0.042 7.042 22 O -0.277 6.277 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.127 0.873 32 H 0.164 0.836 33 H 0.186 0.814 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.999 -12.840 0.405 14.178 hybrid contribution -0.301 1.212 -0.224 1.269 sum 5.698 -11.628 0.181 12.950 Atomic orbital electron populations 1.21995 0.98605 0.97997 1.00765 1.19757 0.90386 0.90754 0.81798 1.21409 1.37571 0.96067 1.03315 0.92357 1.25724 0.94432 1.01815 0.94901 1.70216 1.41739 1.35946 1.04078 0.85777 0.78874 0.81063 0.77096 1.19854 1.21202 1.19460 1.22999 0.99562 0.96361 0.98592 1.22930 0.99658 0.98557 0.95119 1.21831 0.94967 0.86953 0.92391 0.92338 1.19694 0.97817 0.92044 0.98579 1.21086 0.95106 1.00227 0.95714 1.21547 0.98190 0.95894 0.97991 1.21487 0.98900 0.93009 0.98856 1.21322 0.94807 1.01705 0.95199 1.20839 0.97408 0.90264 0.98413 1.98333 1.65382 1.71566 1.68958 1.89263 1.85934 1.16823 1.35663 0.95142 0.93919 0.93522 0.93457 0.91091 0.91768 0.89478 0.91913 0.87273 0.83567 0.81367 0.82273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.64 8.39 71.98 0.60 -6.03 16 2 C 0.21 10.63 0.74 -11.17 -0.01 10.63 16 3 C -0.55 -30.22 8.21 25.60 0.21 -30.01 16 4 H 0.06 3.16 7.37 -2.91 -0.02 3.14 16 5 C 0.03 1.91 5.25 84.66 0.44 2.36 16 6 N -0.88 -51.86 11.29 21.45 0.24 -51.62 16 7 Si 0.95 43.71 29.54 68.60 2.03 45.73 16 8 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 9 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 C -0.14 -5.71 6.26 31.58 0.20 -5.51 16 12 C -0.12 -4.70 6.57 31.89 0.21 -4.49 16 13 C 0.10 4.05 2.94 30.53 0.09 4.14 16 14 H 0.06 2.45 7.32 -2.38 -0.02 2.44 16 15 C -0.08 -2.99 5.14 -19.84 -0.10 -3.09 16 16 C -0.10 -3.81 9.39 22.26 0.21 -3.60 16 17 C -0.12 -3.25 10.05 22.27 0.22 -3.03 16 18 C -0.10 -2.28 10.05 22.27 0.22 -2.05 16 19 C -0.11 -2.65 9.83 22.29 0.22 -2.43 16 20 C -0.04 -1.30 6.31 22.32 0.14 -1.15 16 21 Cl -0.07 -1.98 27.50 -2.72 -0.07 -2.06 16 22 O -0.36 -18.61 8.40 -148.98 -1.25 -19.86 16 23 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.04 2.32 6.85 -2.39 -0.02 2.31 16 25 H 0.05 2.13 8.14 -2.38 -0.02 2.12 16 26 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 27 H 0.07 2.64 7.70 -2.39 -0.02 2.62 16 28 H 0.06 2.66 7.41 -2.39 -0.02 2.64 16 29 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.06 2.38 8.05 -2.39 -0.02 2.36 16 31 H 0.11 4.84 7.28 -2.91 -0.02 4.82 16 32 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 33 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -63.75 296.06 4.69 -59.06 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 1.09 Total: 13.02 kcal Atomic # 6 Polarization: -46.94 SS G_CDS: 2.66 Total: -44.28 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: 0.24 Total: -51.62 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -1.25 Total: -19.86 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -0.07 Total: -2.06 kcal Total: -63.75 4.69 -59.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309378451.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.689 kcal (2) G-P(sol) polarization free energy of solvation -63.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds