Wall clock time and date at job start Mon Mar 30 2020 07:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.82312 * 2 1 4 4 H 1.07995 * 120.00081 * 116.65361 * 3 2 1 5 5 C 1.37879 * 119.99612 * 296.65427 * 3 2 1 6 6 N 1.31517 * 120.00272 * 354.28231 * 5 3 2 7 7 Si 1.86798 * 120.00016 * 174.28529 * 5 3 2 8 8 H 1.48503 * 109.47107 * 265.23590 * 7 5 3 9 9 H 1.48494 * 109.47338 * 145.23622 * 7 5 3 10 10 H 1.48496 * 109.47240 * 25.23470 * 7 5 3 11 11 C 1.54387 * 109.82679 * 120.88051 * 2 1 3 12 12 C 1.55457 * 102.18304 * 98.30114 * 11 2 1 13 13 C 1.54947 * 100.98689 * 34.03913 * 12 11 2 14 14 H 1.08997 * 110.31071 * 82.52427 * 13 12 11 15 15 C 1.50705 * 110.30305 * 204.68942 * 13 12 11 16 16 C 1.38230 * 120.00477 * 92.16952 * 15 13 12 17 17 C 1.38229 * 120.01138 * 180.02562 * 16 15 13 18 18 C 1.38265 * 120.02412 * 359.97438 * 17 16 15 19 19 C 1.38187 * 120.01558 * 359.97438 * 18 17 16 20 20 C 1.38329 * 120.00598 * 271.88866 * 15 13 12 21 21 Cl 1.73598 * 120.01335 * 359.97438 * 20 15 13 22 22 O 1.43233 * 109.82994 * 239.10527 * 2 1 3 23 23 H 1.08997 * 109.47303 * 65.44990 * 1 2 3 24 24 H 1.09001 * 109.47352 * 185.44684 * 1 2 3 25 25 H 1.09003 * 109.47108 * 305.44597 * 1 2 3 26 26 H 0.96993 * 120.00042 * 179.97438 * 6 5 3 27 27 H 1.08996 * 110.84868 * 216.43470 * 11 2 1 28 28 H 1.08996 * 110.84972 * 340.05808 * 11 2 1 29 29 H 1.08994 * 111.05921 * 276.12048 * 12 11 2 30 30 H 1.09000 * 111.17757 * 152.00721 * 12 11 2 31 31 H 1.07994 * 119.99658 * 359.97438 * 16 15 13 32 32 H 1.07997 * 119.98487 * 179.97438 * 17 16 15 33 33 H 1.08004 * 119.99010 * 179.97438 * 18 17 16 34 34 H 1.08002 * 120.00650 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 1 2.6189 1.7834 0.8359 5 6 1.7709 2.2478 -1.0672 6 7 1.1655 1.7723 -2.1335 7 14 2.2648 4.0480 -0.9987 8 1 1.1142 4.8594 -0.5262 9 1 2.6678 4.5027 -2.3536 10 1 3.4049 4.2132 -0.0617 11 6 2.0537 -0.7454 1.2465 12 6 2.3713 -2.1561 0.6757 13 6 2.8425 -1.7963 -0.7558 14 1 3.8913 -1.4998 -0.7456 15 6 2.6375 -2.9662 -1.6834 16 6 1.4633 -3.0797 -2.4039 17 6 1.2749 -4.1530 -3.2543 18 6 2.2609 -5.1134 -3.3851 19 6 3.4356 -5.0005 -2.6661 20 6 3.6267 -3.9237 -1.8182 21 17 5.1048 -3.7777 -0.9196 22 8 2.0159 -0.6918 -1.1562 23 1 -0.3634 0.4270 -0.9347 24 1 -0.3634 -1.0230 0.0975 25 1 -0.3633 0.5960 0.8372 26 1 0.9751 2.3563 -2.8841 27 1 2.9561 -0.2709 1.6316 28 1 1.2845 -0.8013 2.0167 29 1 1.4771 -2.7787 0.6501 30 1 3.1677 -2.6396 1.2415 31 1 0.6926 -2.3300 -2.3019 32 1 0.3572 -4.2414 -3.8168 33 1 2.1130 -5.9520 -4.0494 34 1 4.2059 -5.7506 -2.7687 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309378453.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:35 Heat of formation + Delta-G solvation = -31.824243 kcal Electronic energy + Delta-G solvation = -18358.714620 eV Core-core repulsion = 15475.099824 eV Total energy + Delta-G solvation = -2883.614796 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.45098 -37.87470 -36.17762 -33.17176 -31.38281 -31.05526 -30.41168 -28.88671 -25.30919 -24.69514 -22.37442 -22.00671 -20.24891 -19.32789 -16.85970 -16.42422 -15.81243 -15.24756 -14.63714 -14.23419 -13.86778 -13.55492 -13.44471 -13.18867 -12.49226 -12.11785 -11.89714 -11.70398 -11.32520 -11.25948 -11.15452 -10.98107 -10.85231 -10.78076 -10.48741 -10.38631 -10.15900 -9.96704 -9.54845 -9.05256 -8.60006 -8.46811 -8.39290 -7.81381 -5.92863 -4.06933 1.40795 1.56202 2.39063 3.31630 3.39551 3.42198 3.89869 4.45333 4.80109 5.03284 5.21173 5.26120 5.45729 5.50238 5.57047 5.71515 5.76181 5.98731 6.12385 6.24210 6.27839 6.38281 6.50641 6.52961 6.63198 6.72352 6.80783 6.87856 6.94263 7.07786 7.11131 7.35282 7.80902 7.99929 8.37307 8.62121 9.07940 9.63371 11.10818 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.023991 B = 0.006312 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.822408 B = 4434.782564 C = 4693.048663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.228 3.772 3 C -0.538 4.538 4 H 0.059 0.941 5 C 0.082 3.918 6 N -0.855 5.855 7 Si 0.884 3.116 8 H -0.281 1.281 9 H -0.286 1.286 10 H -0.274 1.274 11 C -0.140 4.140 12 C -0.143 4.143 13 C 0.110 3.890 14 H 0.070 0.930 15 C -0.059 4.059 16 C -0.078 4.078 17 C -0.121 4.121 18 C -0.121 4.121 19 C -0.119 4.119 20 C -0.034 4.034 21 Cl -0.077 7.077 22 O -0.336 6.336 23 H 0.075 0.925 24 H 0.013 0.987 25 H 0.040 0.960 26 H 0.258 0.742 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.144 0.856 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.736 -12.549 0.180 12.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.191 3.809 3 C -0.576 4.576 4 H 0.077 0.923 5 C -0.124 4.124 6 N -0.490 5.490 7 Si 0.712 3.288 8 H -0.207 1.207 9 H -0.212 1.212 10 H -0.199 1.199 11 C -0.178 4.178 12 C -0.181 4.181 13 C 0.051 3.949 14 H 0.088 0.912 15 C -0.060 4.060 16 C -0.096 4.096 17 C -0.139 4.139 18 C -0.140 4.140 19 C -0.138 4.138 20 C -0.061 4.061 21 Cl -0.048 7.048 22 O -0.255 6.255 23 H 0.094 0.906 24 H 0.032 0.968 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.162 0.838 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.742 -12.423 -0.130 12.545 hybrid contribution 0.519 0.937 0.199 1.090 sum 2.261 -11.485 0.069 11.706 Atomic orbital electron populations 1.21912 0.97637 0.97137 1.02436 1.19663 0.90680 0.90549 0.80055 1.21267 1.36285 0.95130 1.04914 0.92295 1.24987 0.94304 0.97962 0.95105 1.70048 1.39801 1.34559 1.04628 0.86729 0.78840 0.85850 0.77403 1.20698 1.21234 1.19897 1.23250 1.00959 0.93788 0.99760 1.23209 1.00612 0.98369 0.95920 1.21600 0.96733 0.86153 0.90402 0.91197 1.20065 0.92876 0.95172 0.97919 1.21206 0.97192 0.97131 0.94080 1.21281 0.99264 0.94521 0.98843 1.21004 0.93537 0.99558 0.99866 1.20892 0.98532 0.97249 0.97113 1.20746 0.88620 0.98014 0.98677 1.98339 1.34437 1.97691 1.74333 1.88806 1.65309 1.39538 1.31836 0.90564 0.96783 0.94094 0.93243 0.91559 0.92053 0.91641 0.91584 0.83848 0.85758 0.85745 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.47 37.16 0.31 -2.81 16 2 C 0.23 5.58 0.82 -91.04 -0.07 5.51 16 3 C -0.54 -14.69 8.18 -34.44 -0.28 -14.97 16 4 H 0.06 1.59 7.56 -52.49 -0.40 1.20 16 5 C 0.08 2.27 5.24 -17.82 -0.09 2.18 16 6 N -0.85 -24.38 11.23 55.43 0.62 -23.76 16 7 Si 0.88 21.19 29.54 -169.99 -5.02 16.17 16 8 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 C -0.14 -2.88 6.08 -24.70 -0.15 -3.03 16 12 C -0.14 -2.65 6.56 -24.40 -0.16 -2.81 16 13 C 0.11 2.28 3.18 -26.85 -0.09 2.20 16 14 H 0.07 1.51 7.14 -51.93 -0.37 1.14 16 15 C -0.06 -1.09 5.10 -104.59 -0.53 -1.62 16 16 C -0.08 -1.37 9.37 -39.59 -0.37 -1.74 16 17 C -0.12 -1.71 10.05 -39.57 -0.40 -2.11 16 18 C -0.12 -1.54 10.05 -39.59 -0.40 -1.94 16 19 C -0.12 -1.62 9.83 -39.55 -0.39 -2.01 16 20 C -0.03 -0.55 6.31 -39.50 -0.25 -0.80 16 21 Cl -0.08 -1.17 27.41 -51.86 -1.42 -2.59 16 22 O -0.34 -8.41 8.34 -35.23 -0.29 -8.71 16 23 H 0.08 1.97 6.74 -51.93 -0.35 1.62 16 24 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.07 1.37 7.68 -51.93 -0.40 0.98 16 28 H 0.06 1.16 7.82 -51.93 -0.41 0.75 16 29 H 0.06 1.16 8.05 -51.93 -0.42 0.75 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.14 2.76 7.35 -52.49 -0.39 2.38 16 32 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 34 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 296.32 15.07 4.47 4.47 Total: -1.00 -28.99 296.32 -8.91 -37.90 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.40 Total: 0.49 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -2.87 Total: -23.98 kcal Atomic # 7 Polarization: -24.38 SS G_CDS: 0.62 Total: -23.76 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.29 Total: -8.71 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.42 Total: -2.59 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.99 -8.91 -37.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309378453.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.079 kcal (2) G-P(sol) polarization free energy of solvation -28.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds