Wall clock time and date at job start Mon Mar 30 2020 07:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.82312 * 2 1 4 4 H 1.07995 * 120.00081 * 116.65361 * 3 2 1 5 5 C 1.37879 * 119.99612 * 296.65427 * 3 2 1 6 6 N 1.31517 * 120.00272 * 354.28231 * 5 3 2 7 7 Si 1.86798 * 120.00016 * 174.28529 * 5 3 2 8 8 H 1.48503 * 109.47107 * 265.23590 * 7 5 3 9 9 H 1.48494 * 109.47338 * 145.23622 * 7 5 3 10 10 H 1.48496 * 109.47240 * 25.23470 * 7 5 3 11 11 C 1.54387 * 109.82679 * 120.88051 * 2 1 3 12 12 C 1.55457 * 102.18304 * 98.30114 * 11 2 1 13 13 C 1.54947 * 100.98689 * 34.03913 * 12 11 2 14 14 H 1.08997 * 110.31071 * 82.52427 * 13 12 11 15 15 C 1.50705 * 110.30305 * 204.68942 * 13 12 11 16 16 C 1.38230 * 120.00477 * 92.16952 * 15 13 12 17 17 C 1.38229 * 120.01138 * 180.02562 * 16 15 13 18 18 C 1.38265 * 120.02412 * 359.97438 * 17 16 15 19 19 C 1.38187 * 120.01558 * 359.97438 * 18 17 16 20 20 C 1.38329 * 120.00598 * 271.88866 * 15 13 12 21 21 Cl 1.73598 * 120.01335 * 359.97438 * 20 15 13 22 22 O 1.43233 * 109.82994 * 239.10527 * 2 1 3 23 23 H 1.08997 * 109.47303 * 65.44990 * 1 2 3 24 24 H 1.09001 * 109.47352 * 185.44684 * 1 2 3 25 25 H 1.09003 * 109.47108 * 305.44597 * 1 2 3 26 26 H 0.96993 * 120.00042 * 179.97438 * 6 5 3 27 27 H 1.08996 * 110.84868 * 216.43470 * 11 2 1 28 28 H 1.08996 * 110.84972 * 340.05808 * 11 2 1 29 29 H 1.08994 * 111.05921 * 276.12048 * 12 11 2 30 30 H 1.09000 * 111.17757 * 152.00721 * 12 11 2 31 31 H 1.07994 * 119.99658 * 359.97438 * 16 15 13 32 32 H 1.07997 * 119.98487 * 179.97438 * 17 16 15 33 33 H 1.08004 * 119.99010 * 179.97438 * 18 17 16 34 34 H 1.08002 * 120.00650 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 1 2.6189 1.7834 0.8359 5 6 1.7709 2.2478 -1.0672 6 7 1.1655 1.7723 -2.1335 7 14 2.2648 4.0480 -0.9987 8 1 1.1142 4.8594 -0.5262 9 1 2.6678 4.5027 -2.3536 10 1 3.4049 4.2132 -0.0617 11 6 2.0537 -0.7454 1.2465 12 6 2.3713 -2.1561 0.6757 13 6 2.8425 -1.7963 -0.7558 14 1 3.8913 -1.4998 -0.7456 15 6 2.6375 -2.9662 -1.6834 16 6 1.4633 -3.0797 -2.4039 17 6 1.2749 -4.1530 -3.2543 18 6 2.2609 -5.1134 -3.3851 19 6 3.4356 -5.0005 -2.6661 20 6 3.6267 -3.9237 -1.8182 21 17 5.1048 -3.7777 -0.9196 22 8 2.0159 -0.6918 -1.1562 23 1 -0.3634 0.4270 -0.9347 24 1 -0.3634 -1.0230 0.0975 25 1 -0.3633 0.5960 0.8372 26 1 0.9751 2.3563 -2.8841 27 1 2.9561 -0.2709 1.6316 28 1 1.2845 -0.8013 2.0167 29 1 1.4771 -2.7787 0.6501 30 1 3.1677 -2.6396 1.2415 31 1 0.6926 -2.3300 -2.3019 32 1 0.3572 -4.2414 -3.8168 33 1 2.1130 -5.9520 -4.0494 34 1 4.2059 -5.7506 -2.7687 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309378453.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:33 Heat of formation + Delta-G solvation = -46.637462 kcal Electronic energy + Delta-G solvation = -18359.356969 eV Core-core repulsion = 15475.099824 eV Total energy + Delta-G solvation = -2884.257145 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -40.85270 -39.38611 -37.35880 -35.04484 -32.99180 -32.77145 -31.59193 -30.49186 -27.29440 -26.32694 -23.63511 -23.40142 -21.68143 -21.15970 -18.42089 -18.06301 -17.33890 -16.62833 -16.39587 -15.67923 -15.48021 -14.98126 -14.68808 -14.64398 -14.09542 -13.86261 -13.64648 -13.10801 -13.02668 -12.80779 -12.73113 -12.46224 -12.38903 -12.31236 -12.20378 -12.07512 -11.80658 -11.52840 -11.27013 -10.88801 -10.56697 -9.91830 -9.69547 -9.46727 -8.01027 -6.21633 0.23594 0.38806 1.20078 1.40153 1.41900 1.51039 2.44519 2.71604 3.12778 3.50909 3.80053 3.89872 4.04737 4.16726 4.24649 4.39148 4.49129 4.60595 4.70584 4.74770 4.83423 4.91680 4.96810 5.08312 5.09449 5.18074 5.26623 5.33723 5.41938 5.55873 5.64028 5.74903 5.95133 6.04889 6.35132 6.66898 7.15831 7.53040 9.01239 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.023991 B = 0.006312 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.822408 B = 4434.782564 C = 4693.048663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.213 3.787 3 C -0.558 4.558 4 H 0.053 0.947 5 C 0.035 3.965 6 N -0.883 5.883 7 Si 0.943 3.057 8 H -0.273 1.273 9 H -0.287 1.287 10 H -0.271 1.271 11 C -0.136 4.136 12 C -0.128 4.128 13 C 0.106 3.894 14 H 0.052 0.948 15 C -0.085 4.085 16 C -0.102 4.102 17 C -0.117 4.117 18 C -0.106 4.106 19 C -0.113 4.113 20 C -0.045 4.045 21 Cl -0.075 7.075 22 O -0.365 6.365 23 H 0.045 0.955 24 H 0.033 0.967 25 H 0.044 0.956 26 H 0.256 0.744 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.150 0.850 33 H 0.168 0.832 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.106 -14.581 -0.028 14.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.175 3.825 3 C -0.595 4.595 4 H 0.071 0.929 5 C -0.168 4.168 6 N -0.519 5.519 7 Si 0.769 3.231 8 H -0.198 1.198 9 H -0.213 1.213 10 H -0.196 1.196 11 C -0.174 4.174 12 C -0.165 4.165 13 C 0.047 3.953 14 H 0.070 0.930 15 C -0.086 4.086 16 C -0.120 4.120 17 C -0.135 4.135 18 C -0.124 4.124 19 C -0.131 4.131 20 C -0.072 4.072 21 Cl -0.046 7.046 22 O -0.285 6.285 23 H 0.064 0.936 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.167 0.833 33 H 0.186 0.814 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.116 -14.456 -0.323 14.614 hybrid contribution 0.430 1.489 0.225 1.566 sum 2.546 -12.968 -0.098 13.216 Atomic orbital electron populations 1.21769 0.97356 0.98105 1.00888 1.19763 0.91059 0.89979 0.81674 1.21664 1.36073 0.97125 1.04663 0.92914 1.25689 0.94518 1.01713 0.94893 1.70188 1.40976 1.35652 1.05101 0.85796 0.78703 0.81397 0.77174 1.19815 1.21319 1.19562 1.23160 1.01035 0.94528 0.98650 1.23119 1.01548 0.97242 0.94635 1.21642 0.95100 0.86077 0.92480 0.93034 1.19893 0.94364 0.95335 0.98984 1.21083 0.96669 0.98215 0.96077 1.21566 1.00767 0.93452 0.97688 1.21487 0.92099 0.99744 0.99063 1.21316 0.99582 0.96627 0.95622 1.20880 0.88280 0.98457 0.99539 1.98335 1.34093 1.97744 1.74417 1.88737 1.65994 1.41219 1.32573 0.93599 0.94778 0.93656 0.93507 0.92203 0.90262 0.90791 0.89491 0.86815 0.83260 0.81433 0.82523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.90 8.47 71.98 0.61 -5.29 16 2 C 0.21 10.65 0.82 -11.07 -0.01 10.64 16 3 C -0.56 -31.13 8.18 25.60 0.21 -30.92 16 4 H 0.05 2.91 7.56 -2.91 -0.02 2.89 16 5 C 0.03 1.96 5.24 84.65 0.44 2.40 16 6 N -0.88 -51.96 11.23 21.45 0.24 -51.72 16 7 Si 0.94 44.32 29.54 68.60 2.03 46.35 16 8 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 9 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 11 C -0.14 -5.59 6.08 31.91 0.19 -5.40 16 12 C -0.13 -4.66 6.56 32.11 0.21 -4.45 16 13 C 0.11 4.45 3.18 30.52 0.10 4.55 16 14 H 0.05 2.30 7.14 -2.39 -0.02 2.29 16 15 C -0.08 -3.11 5.10 -19.84 -0.10 -3.21 16 16 C -0.10 -3.59 9.37 22.27 0.21 -3.38 16 17 C -0.12 -3.04 10.05 22.27 0.22 -2.82 16 18 C -0.11 -2.25 10.05 22.26 0.22 -2.03 16 19 C -0.11 -2.69 9.83 22.29 0.22 -2.47 16 20 C -0.04 -1.38 6.31 22.32 0.14 -1.24 16 21 Cl -0.07 -2.18 27.41 -2.72 -0.07 -2.25 16 22 O -0.37 -18.95 8.34 -148.98 -1.24 -20.20 16 23 H 0.04 2.45 6.74 -2.39 -0.02 2.43 16 24 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 27 H 0.06 2.49 7.68 -2.39 -0.02 2.47 16 28 H 0.08 2.91 7.82 -2.39 -0.02 2.89 16 29 H 0.07 2.56 8.05 -2.39 -0.02 2.54 16 30 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.11 4.61 7.35 -2.91 -0.02 4.59 16 32 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 33 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -64.38 296.32 4.71 -59.67 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 1.09 Total: 11.76 kcal Atomic # 6 Polarization: -46.28 SS G_CDS: 2.67 Total: -43.61 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 0.24 Total: -51.72 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -1.24 Total: -20.20 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -0.07 Total: -2.25 kcal Total: -64.38 4.71 -59.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309378453.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.032 kcal (2) G-P(sol) polarization free energy of solvation -64.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.93 seconds