Wall clock time and date at job start Mon Mar 30 2020 07:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.81807 * 2 1 4 4 H 1.08003 * 119.99930 * 115.35858 * 3 2 1 5 5 C 1.37876 * 120.00113 * 295.34473 * 3 2 1 6 6 N 1.31516 * 120.00151 * 160.55142 * 5 3 2 7 7 Si 1.86796 * 120.00159 * 340.55904 * 5 3 2 8 8 H 1.48510 * 109.46875 * 269.99622 * 7 5 3 9 9 H 1.48499 * 109.47437 * 149.99658 * 7 5 3 10 10 H 1.48496 * 109.47360 * 29.99354 * 7 5 3 11 11 C 1.54374 * 109.83232 * 120.88743 * 2 1 3 12 12 C 1.55309 * 102.25289 * 140.96347 * 11 2 1 13 13 C 1.54947 * 100.93838 * 325.86432 * 12 11 2 14 14 H 1.08997 * 110.31187 * 277.42808 * 13 12 11 15 15 C 1.50699 * 110.30767 * 155.35934 * 13 12 11 16 16 C 1.38241 * 119.98910 * 279.72791 * 15 13 12 17 17 C 1.38213 * 120.01059 * 179.72566 * 16 15 13 18 18 C 1.38355 * 119.98975 * 0.54536 * 17 16 15 19 19 Cl 1.73597 * 120.01485 * 179.74777 * 18 17 16 20 20 C 1.38343 * 119.96905 * 359.72787 * 18 17 16 21 21 C 1.38215 * 119.99218 * 359.97438 * 20 18 17 22 22 O 1.43234 * 109.90297 * 239.06759 * 2 1 3 23 23 H 1.08991 * 109.47538 * 52.13016 * 1 2 3 24 24 H 1.09001 * 109.46911 * 172.13091 * 1 2 3 25 25 H 1.09007 * 109.46910 * 292.12791 * 1 2 3 26 26 H 0.97010 * 119.99729 * 354.89273 * 6 5 3 27 27 H 1.09007 * 110.84789 * 259.14796 * 11 2 1 28 28 H 1.09002 * 110.85219 * 22.76808 * 11 2 1 29 29 H 1.08998 * 111.12356 * 83.78280 * 12 11 2 30 30 H 1.09003 * 111.12058 * 207.90540 * 12 11 2 31 31 H 1.07997 * 119.99455 * 0.02562 * 16 15 13 32 32 H 1.08000 * 120.00482 * 180.27219 * 17 16 15 33 33 H 1.08007 * 120.00408 * 179.97438 * 20 18 17 34 34 H 1.07997 * 119.99689 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4178 0.0000 4 1 2.6009 1.7900 0.8452 5 6 1.7938 2.2396 -1.0791 6 7 1.8851 3.5448 -0.9461 7 14 1.3292 1.4993 -2.7299 8 1 2.5593 1.2445 -3.5220 9 1 0.4526 2.4444 -3.4672 10 1 0.6064 0.2204 -2.5131 11 6 2.0538 -0.7455 1.2462 12 6 3.2746 -1.5196 0.6784 13 6 2.7777 -1.8430 -0.7532 14 1 2.1457 -2.7309 -0.7428 15 6 3.9486 -2.0463 -1.6798 16 6 4.6083 -0.9531 -2.2098 17 6 5.6858 -1.1390 -3.0552 18 6 6.0972 -2.4195 -3.3799 19 17 7.4464 -2.6537 -4.4468 20 6 5.4331 -3.5130 -2.8536 21 6 4.3595 -3.3259 -2.0034 22 8 2.0176 -0.6923 -1.1552 23 1 -0.3634 0.6308 -0.8112 24 1 -0.3633 -1.0180 -0.1407 25 1 -0.3633 0.3871 0.9520 26 1 2.0532 3.9329 -0.0731 27 1 2.3658 -0.0408 2.0172 28 1 1.3019 -1.4347 1.6306 29 1 4.1627 -0.8883 0.6527 30 1 3.4599 -2.4316 1.2459 31 1 4.2846 0.0463 -1.9595 32 1 6.2038 -0.2849 -3.4657 33 1 5.7535 -4.5129 -3.1071 34 1 3.8407 -4.1796 -1.5929 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309398408.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:45 Heat of formation + Delta-G solvation = -34.292712 kcal Electronic energy + Delta-G solvation = -18336.669963 eV Core-core repulsion = 15452.948126 eV Total energy + Delta-G solvation = -2883.721837 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.63986 -38.22643 -36.34446 -33.22944 -31.65019 -31.33671 -30.82888 -29.28384 -25.36710 -24.35877 -22.63165 -22.07907 -20.43107 -19.32092 -17.63831 -17.02025 -15.93653 -15.43328 -14.59628 -14.31940 -13.80537 -13.55663 -13.32888 -13.27708 -12.77632 -12.66774 -12.50984 -12.06878 -11.67388 -11.45908 -11.28229 -11.13842 -10.96311 -10.66495 -10.44226 -10.33058 -10.20182 -9.94248 -9.37777 -9.03818 -8.83756 -8.54674 -8.35124 -8.12301 -6.44721 -4.18953 1.30493 1.50053 2.21834 3.57723 3.60234 3.79598 3.90314 4.61000 4.67370 4.98059 5.03568 5.14552 5.29751 5.36100 5.51662 5.54974 5.64146 5.86334 5.90385 5.98919 6.12201 6.20616 6.27980 6.38689 6.49269 6.54732 6.56381 6.62032 6.71760 6.79498 6.96788 7.04705 7.32496 8.03799 8.16555 8.34630 8.88164 9.55023 10.89571 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.023331 B = 0.006616 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.838993 B = 4230.844185 C = 4900.111975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.196 3.804 3 C -0.603 4.603 4 H 0.060 0.940 5 C 0.047 3.953 6 N -0.899 5.899 7 Si 1.053 2.947 8 H -0.290 1.290 9 H -0.307 1.307 10 H -0.250 1.250 11 C -0.132 4.132 12 C -0.136 4.136 13 C 0.113 3.887 14 H 0.065 0.935 15 C -0.069 4.069 16 C -0.076 4.076 17 C -0.114 4.114 18 C -0.041 4.041 19 Cl -0.085 7.085 20 C -0.118 4.118 21 C -0.106 4.106 22 O -0.370 6.370 23 H 0.053 0.947 24 H 0.028 0.972 25 H 0.051 0.949 26 H 0.268 0.732 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.147 0.853 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.432 -13.813 -1.444 14.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.159 3.841 3 C -0.640 4.640 4 H 0.078 0.922 5 C -0.160 4.160 6 N -0.532 5.532 7 Si 0.884 3.116 8 H -0.217 1.217 9 H -0.236 1.236 10 H -0.176 1.176 11 C -0.169 4.169 12 C -0.174 4.174 13 C 0.056 3.944 14 H 0.083 0.917 15 C -0.069 4.069 16 C -0.094 4.094 17 C -0.132 4.132 18 C -0.067 4.067 19 Cl -0.056 7.056 20 C -0.136 4.136 21 C -0.125 4.125 22 O -0.292 6.292 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.165 0.835 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.185 -13.379 -3.289 14.721 hybrid contribution 0.656 -0.380 1.706 1.867 sum 5.842 -13.759 -1.584 15.032 Atomic orbital electron populations 1.22238 0.97299 0.98794 1.01175 1.20147 0.90700 0.92062 0.81195 1.22064 1.40679 0.94337 1.06885 0.92189 1.25835 0.92616 0.94156 1.03395 1.70888 1.43528 1.11320 1.27430 0.84022 0.77329 0.75464 0.74802 1.21733 1.23627 1.17561 1.23056 0.95985 0.98245 0.99644 1.23131 0.99622 0.99748 0.94896 1.21602 0.89557 0.91684 0.91597 0.91745 1.20186 0.96579 0.92893 0.97255 1.21313 0.92869 1.00862 0.94351 1.21127 0.97745 0.95346 0.99016 1.20897 0.92721 0.95183 0.97904 1.98340 1.45213 1.97373 1.64721 1.20875 0.96513 0.97688 0.98574 1.20889 0.96826 0.96752 0.98003 1.88622 1.68987 1.38138 1.33431 0.92846 0.95277 0.93044 0.92260 0.90956 0.92790 0.90566 0.91704 0.83506 0.85118 0.85376 0.85380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.14 37.16 0.30 -2.63 16 2 C 0.20 4.42 0.78 -91.05 -0.07 4.35 16 3 C -0.60 -16.15 8.63 -34.44 -0.30 -16.45 16 4 H 0.06 1.73 7.70 -52.48 -0.40 1.32 16 5 C 0.05 1.34 5.26 -17.82 -0.09 1.24 16 6 N -0.90 -27.13 13.70 55.43 0.76 -26.37 16 7 Si 1.05 26.49 25.08 -169.99 -4.26 22.23 16 8 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 9 H -0.31 -7.88 7.11 56.52 0.40 -7.48 16 10 H -0.25 -5.93 5.15 56.52 0.29 -5.64 16 11 C -0.13 -2.48 6.08 -24.79 -0.15 -2.64 16 12 C -0.14 -2.31 6.56 -24.48 -0.16 -2.47 16 13 C 0.11 2.02 3.65 -26.86 -0.10 1.92 16 14 H 0.06 1.03 8.06 -51.93 -0.42 0.61 16 15 C -0.07 -1.15 5.03 -104.62 -0.53 -1.68 16 16 C -0.08 -1.37 9.37 -39.59 -0.37 -1.74 16 17 C -0.11 -1.80 9.83 -39.55 -0.39 -2.19 16 18 C -0.04 -0.58 6.32 -39.50 -0.25 -0.83 16 19 Cl -0.09 -1.09 28.96 -51.86 -1.50 -2.59 16 20 C -0.12 -1.55 9.83 -39.55 -0.39 -1.93 16 21 C -0.11 -1.46 9.69 -39.59 -0.38 -1.85 16 22 O -0.37 -8.16 5.59 -35.23 -0.20 -8.36 16 23 H 0.05 1.21 5.43 -51.93 -0.28 0.93 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 26 H 0.27 7.98 8.73 -40.82 -0.36 7.63 16 27 H 0.07 1.41 7.59 -51.93 -0.39 1.02 16 28 H 0.05 0.90 7.85 -51.93 -0.41 0.49 16 29 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.15 3.05 7.67 -52.49 -0.40 2.65 16 32 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 34 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 291.51 15.07 4.39 4.39 Total: -1.00 -29.04 291.51 -8.21 -37.25 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -4.53 Total: 0.33 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -2.88 Total: -26.89 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.76 Total: -26.37 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.20 Total: -8.36 kcal Atomic # 14 Polarization: 26.49 SS G_CDS: -4.26 Total: 22.23 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -1.50 Total: -2.59 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.04 -8.21 -37.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309398408.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.958 kcal (2) G-P(sol) polarization free energy of solvation -29.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds