Wall clock time and date at job start Mon Mar 30 2020 07:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.81807 * 2 1 4 4 H 1.08003 * 119.99930 * 115.35858 * 3 2 1 5 5 C 1.37876 * 120.00113 * 295.34473 * 3 2 1 6 6 N 1.31516 * 120.00151 * 160.55142 * 5 3 2 7 7 Si 1.86796 * 120.00159 * 340.55904 * 5 3 2 8 8 H 1.48510 * 109.46875 * 269.99622 * 7 5 3 9 9 H 1.48499 * 109.47437 * 149.99658 * 7 5 3 10 10 H 1.48496 * 109.47360 * 29.99354 * 7 5 3 11 11 C 1.54374 * 109.83232 * 120.88743 * 2 1 3 12 12 C 1.55309 * 102.25289 * 140.96347 * 11 2 1 13 13 C 1.54947 * 100.93838 * 325.86432 * 12 11 2 14 14 H 1.08997 * 110.31187 * 277.42808 * 13 12 11 15 15 C 1.50699 * 110.30767 * 155.35934 * 13 12 11 16 16 C 1.38241 * 119.98910 * 279.72791 * 15 13 12 17 17 C 1.38213 * 120.01059 * 179.72566 * 16 15 13 18 18 C 1.38355 * 119.98975 * 0.54536 * 17 16 15 19 19 Cl 1.73597 * 120.01485 * 179.74777 * 18 17 16 20 20 C 1.38343 * 119.96905 * 359.72787 * 18 17 16 21 21 C 1.38215 * 119.99218 * 359.97438 * 20 18 17 22 22 O 1.43234 * 109.90297 * 239.06759 * 2 1 3 23 23 H 1.08991 * 109.47538 * 52.13016 * 1 2 3 24 24 H 1.09001 * 109.46911 * 172.13091 * 1 2 3 25 25 H 1.09007 * 109.46910 * 292.12791 * 1 2 3 26 26 H 0.97010 * 119.99729 * 354.89273 * 6 5 3 27 27 H 1.09007 * 110.84789 * 259.14796 * 11 2 1 28 28 H 1.09002 * 110.85219 * 22.76808 * 11 2 1 29 29 H 1.08998 * 111.12356 * 83.78280 * 12 11 2 30 30 H 1.09003 * 111.12058 * 207.90540 * 12 11 2 31 31 H 1.07997 * 119.99455 * 0.02562 * 16 15 13 32 32 H 1.08000 * 120.00482 * 180.27219 * 17 16 15 33 33 H 1.08007 * 120.00408 * 179.97438 * 20 18 17 34 34 H 1.07997 * 119.99689 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4178 0.0000 4 1 2.6009 1.7900 0.8452 5 6 1.7938 2.2396 -1.0791 6 7 1.8851 3.5448 -0.9461 7 14 1.3292 1.4993 -2.7299 8 1 2.5593 1.2445 -3.5220 9 1 0.4526 2.4444 -3.4672 10 1 0.6064 0.2204 -2.5131 11 6 2.0538 -0.7455 1.2462 12 6 3.2746 -1.5196 0.6784 13 6 2.7777 -1.8430 -0.7532 14 1 2.1457 -2.7309 -0.7428 15 6 3.9486 -2.0463 -1.6798 16 6 4.6083 -0.9531 -2.2098 17 6 5.6858 -1.1390 -3.0552 18 6 6.0972 -2.4195 -3.3799 19 17 7.4464 -2.6537 -4.4468 20 6 5.4331 -3.5130 -2.8536 21 6 4.3595 -3.3259 -2.0034 22 8 2.0176 -0.6923 -1.1552 23 1 -0.3634 0.6308 -0.8112 24 1 -0.3633 -1.0180 -0.1407 25 1 -0.3633 0.3871 0.9520 26 1 2.0532 3.9329 -0.0731 27 1 2.3658 -0.0408 2.0172 28 1 1.3019 -1.4347 1.6306 29 1 4.1627 -0.8883 0.6527 30 1 3.4599 -2.4316 1.2459 31 1 4.2846 0.0463 -1.9595 32 1 6.2038 -0.2849 -3.4657 33 1 5.7535 -4.5129 -3.1071 34 1 3.8407 -4.1796 -1.5929 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309398408.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:43 Heat of formation + Delta-G solvation = -50.302918 kcal Electronic energy + Delta-G solvation = -18337.364218 eV Core-core repulsion = 15452.948126 eV Total energy + Delta-G solvation = -2884.416091 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.00078 -39.60524 -37.43148 -35.14353 -33.23154 -32.95377 -31.98959 -30.73394 -27.04303 -26.14874 -23.80731 -23.43245 -21.75342 -21.11235 -19.63277 -18.21389 -17.37740 -16.77056 -15.96387 -15.85566 -15.46171 -15.05382 -14.61534 -14.57090 -14.45751 -14.30441 -14.15051 -13.40332 -13.31067 -12.82210 -12.74073 -12.45736 -12.41696 -12.29555 -11.81296 -11.78236 -11.72455 -11.60828 -11.27840 -10.85137 -10.60985 -10.11660 -9.98825 -9.47258 -8.67508 -6.41490 0.13413 0.34684 1.12906 1.52035 1.57321 1.87909 2.53279 2.60022 2.97048 3.42175 3.76717 3.85425 3.94362 3.99609 4.18041 4.32869 4.42284 4.55851 4.61126 4.67622 4.74997 4.81041 4.89159 4.98499 5.02480 5.12080 5.18528 5.24346 5.30057 5.32586 5.60731 5.71299 5.85003 6.00199 6.11330 6.39596 6.81748 7.39138 8.64439 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.023331 B = 0.006616 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.838993 B = 4230.844185 C = 4900.111975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.189 3.811 3 C -0.594 4.594 4 H 0.024 0.976 5 C 0.002 3.998 6 N -0.939 5.939 7 Si 1.089 2.911 8 H -0.292 1.292 9 H -0.317 1.317 10 H -0.222 1.222 11 C -0.129 4.129 12 C -0.128 4.128 13 C 0.107 3.893 14 H 0.099 0.901 15 C -0.084 4.084 16 C -0.104 4.104 17 C -0.125 4.125 18 C -0.044 4.044 19 Cl -0.070 7.070 20 C -0.107 4.107 21 C -0.092 4.092 22 O -0.391 6.391 23 H 0.033 0.967 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.255 0.745 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.130 0.870 33 H 0.163 0.837 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.354 -18.304 -1.716 19.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.151 3.849 3 C -0.632 4.632 4 H 0.043 0.957 5 C -0.198 4.198 6 N -0.575 5.575 7 Si 0.916 3.084 8 H -0.220 1.220 9 H -0.247 1.247 10 H -0.147 1.147 11 C -0.167 4.167 12 C -0.165 4.165 13 C 0.050 3.950 14 H 0.117 0.883 15 C -0.084 4.084 16 C -0.122 4.122 17 C -0.144 4.144 18 C -0.070 4.070 19 Cl -0.041 7.041 20 C -0.125 4.125 21 C -0.110 4.110 22 O -0.313 6.313 23 H 0.052 0.948 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.148 0.852 33 H 0.180 0.820 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.116 -17.895 -3.547 18.947 hybrid contribution 0.809 0.950 1.829 2.214 sum 5.925 -16.945 -1.718 18.033 Atomic orbital electron populations 1.22186 0.96090 1.00437 1.00782 1.20073 0.91529 0.90013 0.83311 1.22299 1.38666 0.97343 1.04862 0.95733 1.26831 0.92766 0.93966 1.06238 1.70977 1.47196 1.12658 1.26701 0.83574 0.77068 0.75805 0.71908 1.21965 1.24692 1.14652 1.22999 0.97658 0.98422 0.97600 1.23102 0.97633 1.00732 0.95069 1.21950 0.90049 0.91103 0.91940 0.88317 1.20220 0.96578 0.93802 0.97799 1.21039 0.94818 0.99634 0.96732 1.21119 0.97557 0.96564 0.99147 1.21013 0.93168 0.94883 0.97947 1.98348 1.44394 1.97230 1.64166 1.21296 0.95448 0.98699 0.97080 1.21228 0.96502 0.96318 0.96977 1.88498 1.69774 1.39902 1.33122 0.94819 0.91945 0.92531 0.93604 0.92687 0.89439 0.93038 0.87513 0.87818 0.85238 0.81956 0.81515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.58 8.14 71.98 0.59 -5.00 16 2 C 0.19 8.33 0.78 -11.07 -0.01 8.32 16 3 C -0.59 -33.06 8.63 25.60 0.22 -32.84 16 4 H 0.02 1.50 7.70 -2.91 -0.02 1.48 16 5 C 0.00 0.13 5.26 84.65 0.45 0.57 16 6 N -0.94 -59.78 13.70 21.45 0.29 -59.48 16 7 Si 1.09 55.22 25.08 68.60 1.72 56.94 16 8 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16 9 H -0.32 -16.38 7.11 99.48 0.71 -15.68 16 10 H -0.22 -10.19 5.15 99.48 0.51 -9.67 16 11 C -0.13 -4.61 6.08 31.85 0.19 -4.42 16 12 C -0.13 -3.99 6.56 32.05 0.21 -3.78 16 13 C 0.11 3.45 3.65 30.51 0.11 3.56 16 14 H 0.10 2.57 8.06 -2.39 -0.02 2.55 16 15 C -0.08 -2.60 5.03 -19.86 -0.10 -2.70 16 16 C -0.10 -3.77 9.37 22.26 0.21 -3.56 16 17 C -0.13 -3.94 9.83 22.29 0.22 -3.72 16 18 C -0.04 -1.14 6.32 22.32 0.14 -1.00 16 19 Cl -0.07 -1.62 28.96 -2.72 -0.08 -1.70 16 20 C -0.11 -2.33 9.83 22.29 0.22 -2.11 16 21 C -0.09 -2.10 9.69 22.27 0.22 -1.88 16 22 O -0.39 -16.63 5.59 -148.98 -0.83 -17.46 16 23 H 0.03 1.47 5.43 -2.39 -0.01 1.46 16 24 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 26 H 0.26 16.25 8.73 -92.70 -0.81 15.44 16 27 H 0.05 2.13 7.59 -2.38 -0.02 2.11 16 28 H 0.09 2.55 7.85 -2.39 -0.02 2.53 16 29 H 0.05 1.84 8.05 -2.39 -0.02 1.83 16 30 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.10 4.61 7.67 -2.91 -0.02 4.59 16 32 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 33 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 34 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -66.77 291.51 4.62 -62.15 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.86 Total: 8.12 kcal Atomic # 6 Polarization: -51.22 SS G_CDS: 2.66 Total: -48.56 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: 0.29 Total: -59.48 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.83 Total: -17.46 kcal Atomic # 14 Polarization: 55.22 SS G_CDS: 1.72 Total: 56.94 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.08 Total: -1.70 kcal Total: -66.77 4.62 -62.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309398408.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.845 kcal (2) G-P(sol) polarization free energy of solvation -66.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds