Wall clock time and date at job start Mon Mar 30 2020 07:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.89214 * 2 1 4 4 C 1.38263 * 119.99250 * 268.78988 * 3 2 1 5 5 C 1.38222 * 120.02135 * 179.77322 * 4 3 2 6 6 C 1.38233 * 120.01734 * 0.50870 * 5 4 3 7 7 C 1.38332 * 119.98427 * 359.74613 * 6 5 4 8 8 Cl 1.73605 * 120.01196 * 180.02562 * 7 6 5 9 9 C 1.38197 * 119.99372 * 89.07229 * 3 2 1 10 10 C 1.54377 * 109.82570 * 239.06776 * 2 1 3 11 11 C 1.55305 * 102.25359 * 261.84140 * 10 2 1 12 12 C 1.54947 * 100.94107 * 325.87152 * 11 10 2 13 13 H 1.09001 * 110.31085 * 277.52756 * 12 11 10 14 14 C 1.50703 * 110.31147 * 155.36029 * 12 11 10 15 15 H 1.08000 * 119.99973 * 359.97438 * 14 12 11 16 16 C 1.37876 * 120.00218 * 179.97438 * 14 12 11 17 17 N 1.31517 * 119.99715 * 0.02562 * 16 14 12 18 18 Si 1.86789 * 120.00185 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47191 * 60.00040 * 18 16 14 20 20 H 1.48498 * 109.47609 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47457 * 300.00406 * 18 16 14 22 22 O 1.43233 * 109.83089 * 120.93489 * 2 1 3 23 23 H 1.09000 * 109.47125 * 180.93737 * 1 2 3 24 24 H 1.09010 * 109.47073 * 300.92932 * 1 2 3 25 25 H 1.08997 * 109.47414 * 60.93161 * 1 2 3 26 26 H 1.07997 * 119.98696 * 359.97438 * 4 3 2 27 27 H 1.08008 * 119.98581 * 180.25034 * 5 4 3 28 28 H 1.08003 * 120.00606 * 179.72058 * 6 5 4 29 29 H 1.08001 * 120.00318 * 359.97438 * 9 3 2 30 30 H 1.08999 * 110.84327 * 143.65461 * 10 2 1 31 31 H 1.09000 * 111.02558 * 20.11191 * 10 2 1 32 32 H 1.08998 * 111.12690 * 207.95359 * 11 10 2 33 33 H 1.08994 * 111.12720 * 83.78815 * 11 10 2 34 34 H 0.97005 * 119.99771 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0428 1.4171 0.0000 4 6 2.3018 2.0584 -1.1972 5 6 2.7676 3.3597 -1.1980 6 6 2.9849 4.0172 -0.0016 7 6 2.7310 3.3742 1.1966 8 17 3.0030 4.1994 2.6995 9 6 2.2597 2.0733 1.1967 10 6 2.0537 -0.7465 -1.2457 11 6 2.3681 -2.1570 -0.6768 12 6 2.8407 -1.7981 0.7545 13 1 3.8899 -1.5029 0.7436 14 6 2.6350 -2.9680 1.6820 15 1 2.2094 -3.8867 1.3063 16 6 2.9901 -2.8654 3.0103 17 7 3.5079 -1.7464 3.4680 18 14 2.7345 -4.3151 4.1601 19 1 3.5143 -5.4798 3.6692 20 1 3.1931 -3.9515 5.5249 21 1 1.2922 -4.6667 4.2004 22 8 2.0160 -0.6926 1.1557 23 1 -0.3633 -1.0275 0.0168 24 1 -0.3634 0.5282 0.8816 25 1 -0.3634 0.4993 -0.8982 26 1 2.1369 1.5434 -2.1321 27 1 2.9659 3.8615 -2.1337 28 1 3.3532 5.0325 -0.0024 29 1 2.0613 1.5708 2.1319 30 1 2.9570 -0.2731 -1.6303 31 1 1.2875 -0.8021 -2.0191 32 1 3.1636 -2.6408 -1.2435 33 1 1.4731 -2.7785 -0.6507 34 1 3.7580 -1.6744 4.4025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309432490.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:15 Heat of formation + Delta-G solvation = -52.687940 kcal Electronic energy + Delta-G solvation = -18208.328172 eV Core-core repulsion = 15323.808658 eV Total energy + Delta-G solvation = -2884.519514 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.09205 -39.25744 -37.36707 -35.01560 -33.44005 -32.68800 -31.48575 -30.35685 -28.37770 -25.47124 -23.85672 -23.56671 -21.88335 -20.74572 -18.61617 -18.19725 -16.91246 -16.67429 -16.43878 -16.04204 -15.68192 -15.07322 -14.61688 -14.52485 -14.26025 -13.87514 -13.64224 -13.47161 -13.17653 -12.79949 -12.71351 -12.53045 -12.38679 -12.34760 -12.15176 -12.05121 -11.87492 -11.43101 -11.37096 -10.95958 -10.69665 -9.88634 -9.78242 -9.57987 -8.14056 -6.34881 0.23900 0.39265 1.18831 1.39188 1.41959 1.49452 2.40227 2.72175 3.02877 3.52114 3.67226 3.97046 4.03806 4.13276 4.19463 4.35509 4.46819 4.54787 4.66706 4.69495 4.76730 4.85823 4.94651 4.99109 5.08877 5.16007 5.18636 5.34703 5.38499 5.49232 5.55645 5.68704 5.77409 5.94083 6.19847 6.63818 7.09527 7.41563 8.93003 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019292 B = 0.006742 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.994379 B = 4152.360535 C = 5218.745005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.117 3.883 3 C -0.081 4.081 4 C -0.112 4.112 5 C -0.101 4.101 6 C -0.118 4.118 7 C -0.049 4.049 8 Cl -0.084 7.084 9 C -0.108 4.108 10 C -0.132 4.132 11 C -0.139 4.139 12 C 0.204 3.796 13 H -0.014 1.014 14 C -0.553 4.553 15 H 0.065 0.935 16 C 0.023 3.977 17 N -0.901 5.901 18 Si 0.958 3.042 19 H -0.263 1.263 20 H -0.286 1.286 21 H -0.270 1.270 22 O -0.380 6.380 23 H 0.056 0.944 24 H 0.039 0.961 25 H 0.090 0.910 26 H 0.157 0.843 27 H 0.173 0.827 28 H 0.155 0.845 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.239 10.059 -11.629 15.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.077 3.923 3 C -0.081 4.081 4 C -0.129 4.129 5 C -0.119 4.119 6 C -0.137 4.137 7 C -0.075 4.075 8 Cl -0.055 7.055 9 C -0.127 4.127 10 C -0.169 4.169 11 C -0.177 4.177 12 C 0.148 3.852 13 H 0.003 0.997 14 C -0.591 4.591 15 H 0.084 0.916 16 C -0.179 4.179 17 N -0.539 5.539 18 Si 0.783 3.217 19 H -0.188 1.188 20 H -0.211 1.211 21 H -0.195 1.195 22 O -0.300 6.300 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.109 0.891 26 H 0.174 0.826 27 H 0.190 0.810 28 H 0.173 0.827 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.187 10.275 -11.129 15.479 hybrid contribution 0.185 -0.756 1.502 1.692 sum -3.003 9.519 -9.627 13.868 Atomic orbital electron populations 1.21962 0.93044 1.02067 1.02106 1.21077 0.94562 0.88487 0.88217 1.20375 0.98496 0.96105 0.93155 1.21455 0.98520 0.95479 0.97488 1.21490 0.97798 0.94077 0.98501 1.21337 1.00765 1.01424 0.90141 1.21087 1.05069 0.93578 0.87795 1.98337 1.95129 1.78304 1.33725 1.20850 0.99691 0.92945 0.99186 1.23203 1.02237 0.94696 0.96740 1.23192 1.01279 0.97094 0.96100 1.20360 0.88788 0.84425 0.91597 0.99669 1.21517 1.43610 0.98548 0.95390 0.91644 1.25949 0.93617 0.98213 1.00139 1.70187 1.41331 1.27258 1.15085 0.85634 0.78867 0.79627 0.77609 1.18752 1.21136 1.19499 1.88771 1.67509 1.44780 1.28961 0.92466 0.94142 0.89115 0.82585 0.81006 0.82749 0.88342 0.90255 0.87433 0.90501 0.91383 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 8.72 71.98 0.63 -3.83 16 2 C 0.12 4.46 1.08 -11.07 -0.01 4.45 16 3 C -0.08 -2.84 4.83 -19.87 -0.10 -2.94 16 4 C -0.11 -2.86 8.75 22.27 0.19 -2.67 16 5 C -0.10 -2.16 10.04 22.26 0.22 -1.94 16 6 C -0.12 -2.97 9.83 22.29 0.22 -2.75 16 7 C -0.05 -1.62 6.32 22.32 0.14 -1.47 16 8 Cl -0.08 -2.67 28.96 -2.72 -0.08 -2.75 16 9 C -0.11 -4.26 9.14 22.29 0.20 -4.06 16 10 C -0.13 -4.16 5.03 31.85 0.16 -4.00 16 11 C -0.14 -5.47 6.53 32.05 0.21 -5.26 16 12 C 0.20 10.73 3.22 30.51 0.10 10.83 16 13 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 14 C -0.55 -31.63 8.79 25.60 0.23 -31.40 16 15 H 0.07 3.57 7.76 -2.91 -0.02 3.54 16 16 C 0.02 1.33 5.43 84.65 0.46 1.79 16 17 N -0.90 -55.97 13.05 21.45 0.28 -55.69 16 18 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 19 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 O -0.38 -19.85 9.10 -148.98 -1.36 -21.21 16 23 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 25 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.16 3.02 6.80 -2.91 -0.02 3.00 16 27 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 28 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 29 H 0.10 4.72 7.55 -2.91 -0.02 4.69 16 30 H 0.08 2.33 6.83 -2.39 -0.02 2.32 16 31 H 0.11 2.56 7.83 -2.39 -0.02 2.54 16 32 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.07 2.63 8.04 -2.39 -0.02 2.61 16 34 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -69.85 299.63 4.61 -65.24 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 1.09 Total: 10.75 kcal Atomic # 6 Polarization: -45.92 SS G_CDS: 2.66 Total: -43.26 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.28 Total: -55.69 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -1.36 Total: -21.21 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 17 Polarization: -2.67 SS G_CDS: -0.08 Total: -2.75 kcal Total: -69.85 4.61 -65.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309432490.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.551 kcal (2) G-P(sol) polarization free energy of solvation -69.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds