Wall clock time and date at job start Mon Mar 30 2020 07:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 109.86869 * 2 1 4 4 C 1.38268 * 119.98827 * 90.17327 * 3 2 1 5 5 C 1.38220 * 120.02066 * 179.76588 * 4 3 2 6 6 C 1.38238 * 120.01326 * 0.50379 * 5 4 3 7 7 C 1.38324 * 119.99061 * 359.75210 * 6 5 4 8 8 Cl 1.73599 * 120.01906 * 179.97438 * 7 6 5 9 9 C 1.38189 * 119.99536 * 270.44598 * 3 2 1 10 10 C 1.54164 * 110.02226 * 121.07178 * 2 1 3 11 11 C 1.54810 * 104.15891 * 117.43674 * 10 2 1 12 12 C 1.54999 * 102.12305 * 339.15261 * 11 10 2 13 13 H 1.08995 * 110.61910 * 278.34794 * 12 11 10 14 14 C 1.50700 * 110.61544 * 155.50491 * 12 11 10 15 15 H 1.08001 * 120.00291 * 0.02562 * 14 12 11 16 16 C 1.37878 * 120.00100 * 179.97438 * 14 12 11 17 17 N 1.31509 * 120.00546 * 180.02562 * 16 14 12 18 18 Si 1.86801 * 119.99728 * 0.02562 * 16 14 12 19 19 H 1.48495 * 109.47444 * 89.99569 * 18 16 14 20 20 H 1.48503 * 109.47267 * 209.99840 * 18 16 14 21 21 H 1.48507 * 109.47035 * 329.99701 * 18 16 14 22 22 O 1.43740 * 109.87807 * 238.99439 * 2 1 3 23 23 H 1.08995 * 109.47309 * 179.55273 * 1 2 3 24 24 H 1.08995 * 109.46777 * 299.55408 * 1 2 3 25 25 H 1.08999 * 109.46977 * 59.55158 * 1 2 3 26 26 H 1.07997 * 119.99007 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.99337 * 180.23362 * 5 4 3 28 28 H 1.08003 * 120.00842 * 179.72043 * 6 5 4 29 29 H 1.07997 * 120.00364 * 0.02562 * 9 3 2 30 30 H 1.08997 * 110.48818 * 358.77356 * 10 2 1 31 31 H 1.09001 * 110.51716 * 236.10872 * 10 2 1 32 32 H 1.09002 * 110.90720 * 220.93853 * 11 10 2 33 33 H 1.08997 * 110.90646 * 97.36877 * 11 10 2 34 34 H 0.96998 * 120.00687 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0423 1.4173 0.0000 4 6 2.2805 2.0660 1.1976 5 6 2.7549 3.3643 1.1983 6 6 2.9814 4.0184 0.0018 7 6 2.7382 3.3717 -1.1966 8 17 3.0218 4.1927 -2.6997 9 6 2.2683 2.0702 -1.1968 10 6 2.0579 -0.7476 1.2406 11 6 2.8374 -1.9501 0.6550 12 6 2.2314 -2.0696 -0.7666 13 1 1.2873 -2.6134 -0.7369 14 6 3.2015 -2.7443 -1.7019 15 1 4.1661 -3.0669 -1.3389 16 6 2.8571 -2.9507 -3.0210 17 7 3.7034 -3.5399 -3.8371 18 14 1.1884 -2.3933 -3.6488 19 1 1.2889 -0.9998 -4.1517 20 1 0.7504 -3.2870 -4.7510 21 1 0.1991 -2.4502 -2.5426 22 8 2.0188 -0.6963 -1.1586 23 1 -0.3633 -1.0276 -0.0080 24 1 -0.3633 0.5069 0.8939 25 1 -0.3633 0.5208 -0.8859 26 1 2.0992 1.5570 2.1326 27 1 2.9445 3.8692 2.1340 28 1 3.3478 5.0344 0.0025 29 1 2.0775 1.5649 -2.1320 30 1 1.2294 -1.0942 1.8583 31 1 2.7236 -0.1064 1.8185 32 1 2.6508 -2.8541 1.2346 33 1 3.9048 -1.7350 0.6060 34 1 3.4613 -3.6848 -4.7652 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309432492.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:20 Heat of formation + Delta-G solvation = -31.276302 kcal Electronic energy + Delta-G solvation = -18287.616917 eV Core-core repulsion = 15404.025881 eV Total energy + Delta-G solvation = -2883.591035 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -39.94718 -38.09996 -36.28038 -33.20333 -32.03253 -31.37309 -30.36494 -29.19670 -27.13158 -23.90576 -22.82742 -22.14804 -20.10178 -19.58424 -17.32921 -16.71378 -15.70704 -15.30840 -14.95337 -14.67403 -14.23418 -13.81497 -13.50656 -13.32580 -13.11506 -12.56880 -12.35431 -12.04752 -11.91858 -11.59892 -11.38017 -11.26204 -10.89455 -10.82003 -10.70127 -10.45694 -10.30195 -9.87648 -9.67766 -9.48162 -8.75732 -8.65726 -8.58856 -8.43668 -6.13979 -4.22765 1.26742 1.42322 2.26393 3.38280 3.42847 3.50986 3.74945 4.42451 4.52338 4.79810 4.98488 5.15512 5.21474 5.30916 5.35361 5.39401 5.58447 5.70003 5.77971 5.87403 5.91813 5.99479 6.14341 6.24793 6.34449 6.37867 6.38671 6.50270 6.57111 6.62133 6.77444 6.93486 7.12532 7.57452 8.13884 8.41489 8.87531 9.48332 10.96531 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018381 B = 0.007514 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.971554 B = 3725.591235 C = 4579.446522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.131 3.869 3 C -0.050 4.050 4 C -0.115 4.115 5 C -0.113 4.113 6 C -0.120 4.120 7 C -0.035 4.035 8 Cl -0.078 7.078 9 C -0.082 4.082 10 C -0.148 4.148 11 C -0.135 4.135 12 C 0.168 3.832 13 H 0.033 0.967 14 C -0.515 4.515 15 H 0.080 0.920 16 C 0.084 3.916 17 N -0.890 5.890 18 Si 0.895 3.105 19 H -0.273 1.273 20 H -0.297 1.297 21 H -0.266 1.266 22 O -0.367 6.367 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.140 0.860 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.006 13.035 10.126 17.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.091 3.909 3 C -0.050 4.050 4 C -0.133 4.133 5 C -0.131 4.131 6 C -0.139 4.139 7 C -0.062 4.062 8 Cl -0.049 7.049 9 C -0.101 4.101 10 C -0.186 4.186 11 C -0.172 4.172 12 C 0.114 3.886 13 H 0.050 0.950 14 C -0.551 4.551 15 H 0.098 0.902 16 C -0.121 4.121 17 N -0.527 5.527 18 Si 0.724 3.276 19 H -0.198 1.198 20 H -0.224 1.224 21 H -0.190 1.190 22 O -0.288 6.288 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.148 0.852 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.158 0.842 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.913 13.127 9.604 16.991 hybrid contribution -0.729 0.311 -0.449 0.912 sum -5.642 13.438 9.155 17.211 Atomic orbital electron populations 1.22234 0.94969 1.02433 1.01686 1.20726 0.92792 0.88538 0.88886 1.19917 0.97280 0.95418 0.92388 1.21150 0.99497 0.94771 0.97869 1.20987 0.99976 0.94830 0.97344 1.20960 1.01741 1.00315 0.90891 1.20938 1.04317 0.94032 0.86899 1.98355 1.94886 1.78755 1.32949 1.21036 0.97292 0.91789 0.99944 1.23148 1.00135 0.98363 0.96956 1.23004 1.00365 0.96045 0.97833 1.21276 0.95477 0.79922 0.91956 0.94957 1.20925 1.03283 1.36443 0.94477 0.90157 1.25066 0.97475 0.92934 0.96637 1.69912 1.35936 1.41431 1.05437 0.86507 0.84200 0.78779 0.78145 1.19818 1.22376 1.19049 1.89145 1.84815 1.24206 1.30605 0.91806 0.92317 0.92279 0.85243 0.85374 0.85427 0.84177 0.91309 0.90925 0.91657 0.91101 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 8.60 37.16 0.32 -2.14 16 2 C 0.13 2.34 1.00 -91.16 -0.09 2.25 16 3 C -0.05 -0.82 4.85 -104.63 -0.51 -1.32 16 4 C -0.11 -1.52 8.72 -39.58 -0.35 -1.87 16 5 C -0.11 -1.33 10.05 -39.59 -0.40 -1.73 16 6 C -0.12 -1.53 9.83 -39.55 -0.39 -1.92 16 7 C -0.04 -0.54 6.32 -39.50 -0.25 -0.79 16 8 Cl -0.08 -1.14 28.96 -51.86 -1.50 -2.64 16 9 C -0.08 -1.43 9.14 -39.55 -0.36 -1.79 16 10 C -0.15 -2.36 5.75 -25.17 -0.14 -2.51 16 11 C -0.13 -2.61 6.55 -24.72 -0.16 -2.77 16 12 C 0.17 3.99 2.47 -26.83 -0.07 3.92 16 13 H 0.03 0.78 7.04 -51.93 -0.37 0.41 16 14 C -0.51 -14.58 9.39 -34.44 -0.32 -14.90 16 15 H 0.08 2.43 8.01 -52.49 -0.42 2.01 16 16 C 0.08 2.44 5.47 -17.82 -0.10 2.34 16 17 N -0.89 -27.27 13.96 55.43 0.77 -26.49 16 18 Si 0.90 22.77 26.58 -169.99 -4.52 18.25 16 19 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.27 -6.45 6.46 56.52 0.37 -6.08 16 22 O -0.37 -8.46 7.93 -35.23 -0.28 -8.74 16 23 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.13 1.43 6.49 -52.49 -0.34 1.09 16 27 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 29 H 0.14 2.73 7.54 -52.49 -0.40 2.34 16 30 H 0.07 0.94 7.70 -51.93 -0.40 0.54 16 31 H 0.07 1.03 5.82 -51.93 -0.30 0.72 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 34 H 0.27 7.64 8.31 -40.82 -0.34 7.31 16 LS Contribution 293.89 15.07 4.43 4.43 Total: -1.00 -30.64 293.89 -8.26 -38.90 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -4.35 Total: -0.48 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -2.82 Total: -23.23 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.77 Total: -26.49 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.28 Total: -8.74 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.52 Total: 18.25 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.64 -8.26 -38.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309432492.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.621 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds