Wall clock time and date at job start Mon Mar 30 2020 07:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 109.86869 * 2 1 4 4 C 1.38268 * 119.98827 * 90.17327 * 3 2 1 5 5 C 1.38220 * 120.02066 * 179.76588 * 4 3 2 6 6 C 1.38238 * 120.01326 * 0.50379 * 5 4 3 7 7 C 1.38324 * 119.99061 * 359.75210 * 6 5 4 8 8 Cl 1.73599 * 120.01906 * 179.97438 * 7 6 5 9 9 C 1.38189 * 119.99536 * 270.44598 * 3 2 1 10 10 C 1.54164 * 110.02226 * 121.07178 * 2 1 3 11 11 C 1.54810 * 104.15891 * 117.43674 * 10 2 1 12 12 C 1.54999 * 102.12305 * 339.15261 * 11 10 2 13 13 H 1.08995 * 110.61910 * 278.34794 * 12 11 10 14 14 C 1.50700 * 110.61544 * 155.50491 * 12 11 10 15 15 H 1.08001 * 120.00291 * 0.02562 * 14 12 11 16 16 C 1.37878 * 120.00100 * 179.97438 * 14 12 11 17 17 N 1.31509 * 120.00546 * 180.02562 * 16 14 12 18 18 Si 1.86801 * 119.99728 * 0.02562 * 16 14 12 19 19 H 1.48495 * 109.47444 * 89.99569 * 18 16 14 20 20 H 1.48503 * 109.47267 * 209.99840 * 18 16 14 21 21 H 1.48507 * 109.47035 * 329.99701 * 18 16 14 22 22 O 1.43740 * 109.87807 * 238.99439 * 2 1 3 23 23 H 1.08995 * 109.47309 * 179.55273 * 1 2 3 24 24 H 1.08995 * 109.46777 * 299.55408 * 1 2 3 25 25 H 1.08999 * 109.46977 * 59.55158 * 1 2 3 26 26 H 1.07997 * 119.99007 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.99337 * 180.23362 * 5 4 3 28 28 H 1.08003 * 120.00842 * 179.72043 * 6 5 4 29 29 H 1.07997 * 120.00364 * 0.02562 * 9 3 2 30 30 H 1.08997 * 110.48818 * 358.77356 * 10 2 1 31 31 H 1.09001 * 110.51716 * 236.10872 * 10 2 1 32 32 H 1.09002 * 110.90720 * 220.93853 * 11 10 2 33 33 H 1.08997 * 110.90646 * 97.36877 * 11 10 2 34 34 H 0.96998 * 120.00687 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0423 1.4173 0.0000 4 6 2.2805 2.0660 1.1976 5 6 2.7549 3.3643 1.1983 6 6 2.9814 4.0184 0.0018 7 6 2.7382 3.3717 -1.1966 8 17 3.0218 4.1927 -2.6997 9 6 2.2683 2.0702 -1.1968 10 6 2.0579 -0.7476 1.2406 11 6 2.8374 -1.9501 0.6550 12 6 2.2314 -2.0696 -0.7666 13 1 1.2873 -2.6134 -0.7369 14 6 3.2015 -2.7443 -1.7019 15 1 4.1661 -3.0669 -1.3389 16 6 2.8571 -2.9507 -3.0210 17 7 3.7034 -3.5399 -3.8371 18 14 1.1884 -2.3933 -3.6488 19 1 1.2889 -0.9998 -4.1517 20 1 0.7504 -3.2870 -4.7510 21 1 0.1991 -2.4502 -2.5426 22 8 2.0188 -0.6963 -1.1586 23 1 -0.3633 -1.0276 -0.0080 24 1 -0.3633 0.5069 0.8939 25 1 -0.3633 0.5208 -0.8859 26 1 2.0992 1.5570 2.1326 27 1 2.9445 3.8692 2.1340 28 1 3.3478 5.0344 0.0025 29 1 2.0775 1.5649 -2.1320 30 1 1.2294 -1.0942 1.8583 31 1 2.7236 -0.1064 1.8185 32 1 2.6508 -2.8541 1.2346 33 1 3.9048 -1.7350 0.6060 34 1 3.4613 -3.6848 -4.7652 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309432492.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:20 Heat of formation + Delta-G solvation = -49.155951 kcal Electronic energy + Delta-G solvation = -18288.392237 eV Core-core repulsion = 15404.025881 eV Total energy + Delta-G solvation = -2884.366355 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.24531 -39.42554 -37.42269 -35.06774 -33.71244 -32.83814 -31.55816 -30.43582 -28.88028 -25.45440 -23.98277 -23.45653 -21.78611 -20.87400 -19.15866 -18.19932 -17.15486 -16.74194 -16.26576 -16.15212 -15.60565 -15.30819 -14.82557 -14.65334 -14.51578 -14.36785 -13.77234 -13.66683 -13.14400 -12.89635 -12.73692 -12.59233 -12.47384 -12.19940 -12.14964 -11.94577 -11.83934 -11.51994 -11.37064 -11.27644 -10.89059 -10.26946 -9.83377 -9.61708 -8.39508 -6.51376 0.19483 0.33607 1.14913 1.29808 1.37370 1.45239 2.31396 2.66450 2.81075 3.38617 3.60692 3.94416 3.97246 4.02506 4.18638 4.23994 4.40516 4.42929 4.51331 4.59901 4.70108 4.74722 4.90085 4.96648 4.99165 5.07542 5.14216 5.29383 5.33483 5.40148 5.43332 5.50938 5.60446 5.88460 6.18149 6.43835 6.67828 7.23638 8.75062 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018381 B = 0.007514 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.971554 B = 3725.591235 C = 4579.446522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.118 3.882 3 C -0.069 4.069 4 C -0.109 4.109 5 C -0.098 4.098 6 C -0.116 4.116 7 C -0.049 4.049 8 Cl -0.083 7.083 9 C -0.114 4.114 10 C -0.135 4.135 11 C -0.133 4.133 12 C 0.166 3.834 13 H 0.033 0.967 14 C -0.523 4.523 15 H 0.043 0.957 16 C 0.029 3.971 17 N -0.937 5.937 18 Si 0.954 3.046 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.246 1.246 22 O -0.397 6.397 23 H 0.058 0.942 24 H 0.095 0.905 25 H 0.045 0.955 26 H 0.161 0.839 27 H 0.173 0.827 28 H 0.154 0.846 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.475 15.158 13.464 21.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.078 3.922 3 C -0.070 4.070 4 C -0.127 4.127 5 C -0.116 4.116 6 C -0.134 4.134 7 C -0.075 4.075 8 Cl -0.055 7.055 9 C -0.133 4.133 10 C -0.172 4.172 11 C -0.171 4.171 12 C 0.111 3.889 13 H 0.051 0.949 14 C -0.560 4.560 15 H 0.061 0.939 16 C -0.171 4.171 17 N -0.577 5.577 18 Si 0.780 3.220 19 H -0.208 1.208 20 H -0.216 1.216 21 H -0.170 1.170 22 O -0.318 6.318 23 H 0.077 0.923 24 H 0.114 0.886 25 H 0.064 0.936 26 H 0.178 0.822 27 H 0.191 0.809 28 H 0.172 0.828 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.391 15.252 12.962 21.011 hybrid contribution -0.191 -0.265 -1.418 1.455 sum -6.581 14.987 11.545 20.030 Atomic orbital electron populations 1.22228 0.93442 1.02428 1.02926 1.21109 0.94122 0.89186 0.87777 1.19932 0.98790 0.94901 0.93329 1.21473 0.98296 0.95391 0.97504 1.21504 0.97412 0.94098 0.98541 1.21358 1.00483 1.01418 0.90172 1.21082 1.04977 0.93594 0.87845 1.98347 1.94922 1.78573 1.33613 1.20862 1.00141 0.93126 0.99165 1.23155 1.01044 0.96590 0.96378 1.22927 0.99539 0.98850 0.95791 1.21083 0.94442 0.80258 0.93138 0.94906 1.21254 1.02768 1.36623 0.95403 0.93852 1.25876 1.00939 0.93196 0.97043 1.70035 1.38038 1.43695 1.05946 0.85574 0.80619 0.77584 0.78193 1.20827 1.21589 1.16955 1.89040 1.85617 1.23629 1.33557 0.92302 0.88615 0.93609 0.82150 0.80949 0.82785 0.87997 0.88000 0.88497 0.89805 0.93005 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.42 8.60 71.98 0.62 -3.80 16 2 C 0.12 3.97 1.00 -11.14 -0.01 3.96 16 3 C -0.07 -2.13 4.85 -19.87 -0.10 -2.23 16 4 C -0.11 -2.38 8.72 22.27 0.19 -2.19 16 5 C -0.10 -1.78 10.05 22.27 0.22 -1.56 16 6 C -0.12 -2.54 9.83 22.29 0.22 -2.32 16 7 C -0.05 -1.43 6.32 22.32 0.14 -1.29 16 8 Cl -0.08 -2.41 28.96 -2.72 -0.08 -2.49 16 9 C -0.11 -3.99 9.14 22.29 0.20 -3.78 16 10 C -0.13 -3.78 5.75 31.61 0.18 -3.60 16 11 C -0.13 -5.00 6.55 31.90 0.21 -4.79 16 12 C 0.17 7.89 2.47 30.53 0.08 7.97 16 13 H 0.03 1.56 7.04 -2.39 -0.02 1.54 16 14 C -0.52 -30.87 9.39 25.60 0.24 -30.63 16 15 H 0.04 2.78 8.01 -2.91 -0.02 2.76 16 16 C 0.03 1.77 5.47 84.66 0.46 2.24 16 17 N -0.94 -60.03 13.96 21.45 0.30 -59.73 16 18 Si 0.95 48.43 26.58 68.60 1.82 50.25 16 19 H -0.28 -14.62 7.11 99.48 0.71 -13.91 16 20 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 21 H -0.25 -11.53 6.46 99.48 0.64 -10.88 16 22 O -0.40 -18.42 7.93 -148.98 -1.18 -19.60 16 23 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.16 2.49 6.49 -2.91 -0.02 2.47 16 27 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 28 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 29 H 0.10 4.25 7.54 -2.91 -0.02 4.22 16 30 H 0.10 2.22 7.70 -2.39 -0.02 2.21 16 31 H 0.10 2.26 5.82 -2.39 -0.01 2.24 16 32 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.05 2.10 8.04 -2.39 -0.02 2.09 16 34 H 0.27 16.08 8.31 -92.71 -0.77 15.30 16 Total: -1.00 -71.48 293.89 4.55 -66.92 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 1.03 Total: 6.67 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 2.66 Total: -42.02 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.30 Total: -59.73 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -1.18 Total: -19.60 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 1.82 Total: 50.25 kcal Atomic # 17 Polarization: -2.41 SS G_CDS: -0.08 Total: -2.49 kcal Total: -71.48 4.55 -66.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309432492.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.766 kcal (2) G-P(sol) polarization free energy of solvation -71.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds