Wall clock time and date at job start Mon Mar 30 2020 07:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.98965 * 2 1 4 4 C 1.38261 * 119.99076 * 88.91993 * 3 2 1 5 5 C 1.38222 * 120.02641 * 179.97438 * 4 3 2 6 6 C 1.38237 * 120.01172 * 0.02562 * 5 4 3 7 7 C 1.38332 * 119.98728 * 359.97438 * 6 5 4 8 8 Cl 1.73602 * 120.01112 * 180.02562 * 7 6 5 9 9 C 1.38194 * 119.99602 * 268.63991 * 3 2 1 10 10 C 1.54106 * 109.87811 * 238.91919 * 2 1 3 11 11 C 1.54810 * 104.18526 * 242.60515 * 10 2 1 12 12 C 1.54991 * 102.09350 * 20.88072 * 11 10 2 13 13 H 1.08993 * 110.62131 * 81.47823 * 12 11 10 14 14 C 1.50705 * 110.61357 * 204.47713 * 12 11 10 15 15 H 1.07997 * 120.00488 * 359.97438 * 14 12 11 16 16 C 1.37879 * 119.99506 * 179.97438 * 14 12 11 17 17 N 1.31510 * 120.00477 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 119.99870 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46765 * 59.99712 * 18 16 14 20 20 H 1.48488 * 109.47102 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46783 * 300.00301 * 18 16 14 22 22 O 1.43745 * 109.88388 * 121.08768 * 2 1 3 23 23 H 1.08999 * 109.46755 * 181.08380 * 1 2 3 24 24 H 1.09006 * 109.46851 * 301.07955 * 1 2 3 25 25 H 1.08997 * 109.47182 * 61.08122 * 1 2 3 26 26 H 1.08000 * 119.98715 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.99361 * 180.02562 * 5 4 3 28 28 H 1.08006 * 120.00624 * 180.02562 * 6 5 4 29 29 H 1.08004 * 120.00639 * 0.02562 * 9 3 2 30 30 H 1.09000 * 110.48246 * 1.28124 * 10 2 1 31 31 H 1.08999 * 110.48882 * 123.92678 * 10 2 1 32 32 H 1.09005 * 110.90592 * 139.08047 * 11 10 2 33 33 H 1.09001 * 110.90204 * 262.64524 * 11 10 2 34 34 H 0.96996 * 120.00265 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0452 1.4162 0.0000 4 6 2.2602 2.0734 1.1973 5 6 2.7332 3.3722 1.1981 6 6 2.9910 4.0149 0.0018 7 6 2.7761 3.3579 -1.1964 8 17 3.1003 4.1643 -2.6992 9 6 2.3080 2.0558 -1.1965 10 6 2.0540 -0.7482 -1.2412 11 6 2.8324 -1.9524 -0.6577 12 6 2.2281 -2.0714 0.7646 13 1 1.2814 -2.6108 0.7355 14 6 3.1980 -2.7487 1.6982 15 1 4.1614 -3.0731 1.3338 16 6 2.8552 -2.9540 3.0179 17 7 1.6819 -2.5594 3.4617 18 14 4.0571 -3.7942 4.1751 19 1 5.3100 -3.0004 4.2491 20 1 3.4535 -3.8947 5.5281 21 1 4.3631 -5.1559 3.6677 22 8 2.0189 -0.6980 1.1576 23 1 -0.3633 -1.0275 0.0194 24 1 -0.3633 0.5305 0.8802 25 1 -0.3633 0.4969 -0.8995 26 1 2.0585 1.5718 2.1322 27 1 2.9014 3.8849 2.1337 28 1 3.3610 5.0296 0.0026 29 1 2.1439 1.5409 -2.1316 30 1 1.2237 -1.0930 -1.8574 31 1 2.7196 -0.1078 -1.8199 32 1 2.6432 -2.8558 -1.2376 33 1 3.9003 -1.7392 -0.6106 34 1 1.4406 -2.7043 4.3899 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309432494.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:24 Heat of formation + Delta-G solvation = -50.341752 kcal Electronic energy + Delta-G solvation = -18128.488520 eV Core-core repulsion = 15244.070745 eV Total energy + Delta-G solvation = -2884.417775 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.13909 -39.30490 -37.37380 -35.02413 -33.52703 -32.62645 -31.50202 -30.34938 -28.50141 -25.55598 -24.07235 -23.41769 -21.82323 -20.76438 -18.86286 -18.01493 -17.00017 -16.67427 -16.22207 -16.05409 -15.59670 -15.35732 -14.74844 -14.49945 -14.31705 -14.27704 -13.54937 -13.51565 -13.09708 -12.77319 -12.72649 -12.49137 -12.39882 -12.33001 -12.12155 -12.01774 -11.93302 -11.41869 -11.37050 -11.00369 -10.71582 -10.02070 -9.81000 -9.59211 -8.16658 -6.36416 0.22984 0.31563 1.13369 1.40618 1.43094 1.50655 2.40293 2.67965 3.01703 3.48925 3.68491 3.94559 4.02384 4.07979 4.17306 4.34209 4.40381 4.49477 4.59209 4.65224 4.70484 4.84021 4.89667 4.96061 5.03672 5.14305 5.15226 5.25011 5.35657 5.45892 5.55011 5.67305 5.75083 5.86297 6.17552 6.60781 6.95832 7.38770 8.91367 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.027765 B = 0.005297 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.229916 B = 5284.343718 C = 5571.499781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.117 3.883 3 C -0.064 4.064 4 C -0.110 4.110 5 C -0.106 4.106 6 C -0.114 4.114 7 C -0.040 4.040 8 Cl -0.066 7.066 9 C -0.111 4.111 10 C -0.140 4.140 11 C -0.141 4.141 12 C 0.204 3.796 13 H -0.001 1.001 14 C -0.552 4.552 15 H 0.063 0.937 16 C 0.026 3.974 17 N -0.901 5.901 18 Si 0.959 3.041 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.264 1.264 22 O -0.374 6.374 23 H 0.048 0.952 24 H 0.045 0.955 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.153 0.847 28 H 0.157 0.843 29 H 0.147 0.853 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.548 11.941 -9.692 15.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.077 3.923 3 C -0.065 4.065 4 C -0.128 4.128 5 C -0.124 4.124 6 C -0.132 4.132 7 C -0.067 4.067 8 Cl -0.037 7.037 9 C -0.130 4.130 10 C -0.178 4.178 11 C -0.178 4.178 12 C 0.149 3.851 13 H 0.016 0.984 14 C -0.590 4.590 15 H 0.081 0.919 16 C -0.176 4.176 17 N -0.538 5.538 18 Si 0.783 3.217 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.188 1.188 22 O -0.294 6.294 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.102 0.898 26 H 0.126 0.874 27 H 0.171 0.829 28 H 0.175 0.825 29 H 0.165 0.835 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.486 12.105 -9.480 15.383 hybrid contribution 0.298 -0.733 0.729 1.076 sum 0.785 11.372 -8.751 14.371 Atomic orbital electron populations 1.22111 0.94250 1.01656 1.02111 1.20967 0.93726 0.89373 0.88269 1.19861 0.98334 0.94991 0.93295 1.21210 0.98348 0.95128 0.98139 1.21350 0.98226 0.93811 0.99048 1.21288 1.00486 1.01345 0.90096 1.20915 1.04292 0.93732 0.87731 1.98350 1.94110 1.79176 1.32030 1.20993 1.00208 0.93379 0.98408 1.23144 1.00698 0.97089 0.96827 1.23075 0.99620 0.98073 0.97081 1.20507 0.93314 0.80329 0.90981 0.98376 1.21392 1.02895 1.38601 0.96066 0.91926 1.25903 0.96689 0.95055 0.99938 1.70140 1.21810 1.45837 1.16021 0.85622 0.79037 0.79293 0.77742 1.19733 1.20698 1.18845 1.89185 1.85249 1.23173 1.31844 0.93258 0.93564 0.89759 0.87413 0.82942 0.82529 0.83498 0.89260 0.89326 0.90576 0.92452 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 8.60 71.98 0.62 -4.48 16 2 C 0.12 4.55 1.00 -11.17 -0.01 4.54 16 3 C -0.06 -2.23 4.87 -19.87 -0.10 -2.33 16 4 C -0.11 -3.85 9.36 22.27 0.21 -3.64 16 5 C -0.11 -2.86 10.05 22.27 0.22 -2.64 16 6 C -0.11 -2.71 9.83 22.29 0.22 -2.49 16 7 C -0.04 -1.03 6.32 22.32 0.14 -0.88 16 8 Cl -0.07 -1.42 28.96 -2.72 -0.08 -1.50 16 9 C -0.11 -3.18 8.52 22.29 0.19 -2.99 16 10 C -0.14 -4.76 5.76 31.59 0.18 -4.58 16 11 C -0.14 -5.78 6.55 31.89 0.21 -5.57 16 12 C 0.20 10.63 3.03 30.53 0.09 10.73 16 13 H 0.00 -0.08 8.11 -2.39 -0.02 -0.10 16 14 C -0.55 -31.42 8.82 25.60 0.23 -31.20 16 15 H 0.06 3.45 7.77 -2.91 -0.02 3.42 16 16 C 0.03 1.51 5.44 84.66 0.46 1.97 16 17 N -0.90 -54.07 13.13 21.45 0.28 -53.79 16 18 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 22 O -0.37 -19.24 9.42 -148.98 -1.40 -20.64 16 23 H 0.05 1.85 8.11 -2.39 -0.02 1.83 16 24 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 26 H 0.11 4.38 7.56 -2.91 -0.02 4.36 16 27 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 28 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 29 H 0.15 3.67 6.41 -2.91 -0.02 3.65 16 30 H 0.09 2.59 7.70 -2.39 -0.02 2.57 16 31 H 0.09 2.63 5.73 -2.39 -0.01 2.61 16 32 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 33 H 0.06 2.40 8.04 -2.39 -0.02 2.38 16 34 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -64.64 298.79 4.58 -60.06 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 1.09 Total: 13.36 kcal Atomic # 6 Polarization: -46.22 SS G_CDS: 2.66 Total: -43.55 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.28 Total: -53.79 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -1.40 Total: -20.64 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.50 kcal Total: -64.64 4.58 -60.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309432494.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.715 kcal (2) G-P(sol) polarization free energy of solvation -64.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds