Wall clock time and date at job start Mon Mar 30 2020 07:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32649 * 120.00550 * 2 1 4 4 C 1.47718 * 120.00550 * 188.03715 * 3 2 1 5 5 C 1.39639 * 120.07755 * 220.92290 * 4 3 2 6 6 C 1.37779 * 119.93014 * 179.78761 * 5 4 3 7 7 C 1.39042 * 120.06837 * 0.49319 * 6 5 4 8 8 O 1.35680 * 119.92153 * 179.76612 * 7 6 5 9 9 C 1.34812 * 116.99520 * 174.56347 * 8 7 6 10 10 H 1.07994 * 120.00543 * 5.31541 * 9 8 7 11 11 C 1.38650 * 119.99589 * 185.31658 * 9 8 7 12 12 N 1.31552 * 120.00102 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99599 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47501 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47172 * 119.99890 * 13 11 9 16 16 H 1.48503 * 109.46642 * 239.99581 * 13 11 9 17 17 C 1.39032 * 120.14579 * 359.73750 * 7 6 5 18 18 C 1.37781 * 120.07382 * 0.02562 * 17 7 6 19 19 C 1.50704 * 119.99860 * 180.02562 * 2 1 3 20 20 H 1.09001 * 109.46843 * 184.58941 * 19 2 1 21 21 C 1.52995 * 109.47428 * 64.58464 * 19 2 1 22 22 Cl 1.80303 * 109.46652 * 304.58704 * 19 2 1 23 23 H 1.09002 * 109.47571 * 89.99084 * 1 2 3 24 24 H 1.09005 * 109.46816 * 329.99619 * 1 2 3 25 25 H 1.08993 * 109.47385 * 209.99637 * 1 2 3 26 26 H 1.08004 * 119.99212 * 8.04548 * 3 2 1 27 27 H 1.08002 * 120.03115 * 0.02562 * 5 4 3 28 28 H 1.07996 * 119.96243 * 180.25233 * 6 5 4 29 29 H 0.97004 * 119.99809 * 179.97438 * 12 11 9 30 30 H 1.08001 * 119.95703 * 180.02562 * 17 7 6 31 31 H 1.08000 * 120.03386 * 179.97438 * 18 17 7 32 32 H 1.09006 * 109.46789 * 60.00295 * 21 19 2 33 33 H 1.09003 * 109.47386 * 180.02562 * 21 19 2 34 34 H 1.08992 * 109.47452 * 300.00660 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1703 1.1487 0.0000 4 6 3.6366 1.1550 -0.1789 5 6 4.4310 2.0134 0.5840 6 6 5.7987 2.0136 0.4178 7 6 6.3872 1.1676 -0.5156 8 8 7.7340 1.1737 -0.6801 9 6 8.2523 0.2531 -1.5176 10 1 7.5967 -0.3889 -2.0870 11 6 9.6272 0.1305 -1.6477 12 7 10.4259 0.9129 -0.9544 13 14 10.3455 -1.1446 -2.8086 14 1 9.2435 -1.8917 -3.4664 15 1 11.1692 -0.4658 -3.8411 16 1 11.1948 -2.0903 -2.0407 17 6 5.5987 0.3152 -1.2801 18 6 4.2308 0.3066 -1.1154 19 6 2.2604 -1.3052 -0.0006 20 1 3.3292 -1.1076 0.0817 21 6 1.9793 -2.0558 -1.3037 22 17 1.7251 -2.3086 1.3985 23 1 -0.3634 0.0002 -1.0277 24 1 -0.3633 0.8900 0.5139 25 1 -0.3634 -0.8899 0.5137 26 1 1.6382 2.0794 0.1309 27 1 3.9740 2.6737 1.3063 28 1 6.4140 2.6744 1.0104 29 1 11.3879 0.8268 -1.0452 30 1 6.0591 -0.3410 -2.0040 31 1 3.6189 -0.3556 -1.7099 32 1 2.3029 -1.4491 -2.1496 33 1 2.5240 -3.0000 -1.3040 34 1 0.9106 -2.2532 -1.3861 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309502484.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:13 Heat of formation + Delta-G solvation = -24.629037 kcal Electronic energy + Delta-G solvation = -17409.597929 eV Core-core repulsion = 14526.295141 eV Total energy + Delta-G solvation = -2883.302788 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91981 -39.16190 -37.38037 -35.99110 -34.29062 -32.32366 -31.67407 -30.79594 -27.84234 -26.69463 -24.65528 -23.49054 -22.56846 -19.87634 -19.34118 -18.76962 -16.88373 -16.77762 -16.20729 -15.91475 -15.58233 -15.43818 -14.91504 -14.69073 -14.31179 -13.96917 -13.77742 -13.62252 -13.54077 -13.20855 -13.06478 -12.66955 -12.47836 -12.29844 -12.26798 -12.12095 -12.05832 -11.36872 -11.18530 -11.16341 -10.84685 -10.09309 -9.80841 -8.64716 -8.49249 -6.16594 0.22582 0.55137 1.08859 1.35117 1.43047 1.53231 1.80983 2.16298 2.82804 3.15064 3.48617 3.61654 3.87741 3.98830 4.06039 4.14606 4.20663 4.49920 4.57198 4.66299 4.70447 4.82961 4.89108 4.95443 5.03212 5.07975 5.15268 5.22262 5.28087 5.42079 5.58480 5.66801 5.69973 5.94094 6.00602 6.16639 6.95402 7.74882 8.73726 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.025104 B = 0.004694 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.101183 B = 5963.321289 C = 6542.386980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.141 4.141 3 C -0.082 4.082 4 C -0.147 4.147 5 C -0.053 4.053 6 C -0.204 4.204 7 C 0.118 3.882 8 O -0.228 6.228 9 C -0.414 4.414 10 H 0.104 0.896 11 C -0.021 4.021 12 N -0.919 5.919 13 Si 1.018 2.982 14 H -0.250 1.250 15 H -0.268 1.268 16 H -0.269 1.269 17 C -0.242 4.242 18 C -0.065 4.065 19 C 0.026 3.974 20 H 0.098 0.902 21 C -0.155 4.155 22 Cl -0.200 7.200 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.144 0.856 27 H 0.151 0.849 28 H 0.115 0.885 29 H 0.273 0.727 30 H 0.122 0.878 31 H 0.143 0.857 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.213 -3.897 -0.837 19.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.142 4.142 3 C -0.100 4.100 4 C -0.148 4.148 5 C -0.071 4.071 6 C -0.223 4.223 7 C 0.067 3.933 8 O -0.134 6.134 9 C -0.490 4.490 10 H 0.121 0.879 11 C -0.219 4.219 12 N -0.556 5.556 13 Si 0.837 3.163 14 H -0.173 1.173 15 H -0.193 1.193 16 H -0.194 1.194 17 C -0.262 4.262 18 C -0.082 4.082 19 C -0.017 4.017 20 H 0.116 0.884 21 C -0.212 4.212 22 Cl -0.173 7.173 23 H 0.100 0.900 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.161 0.839 27 H 0.169 0.831 28 H 0.133 0.867 29 H 0.082 0.918 30 H 0.139 0.861 31 H 0.160 0.840 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.864 -3.803 -0.608 19.253 hybrid contribution 1.059 -0.353 -0.200 1.134 sum -17.805 -4.156 -0.808 18.302 Atomic orbital electron populations 1.20775 0.89338 1.03384 1.03042 1.21988 0.97077 0.92210 1.02889 1.21549 0.90475 0.98441 0.99575 1.18953 0.94140 1.00759 1.00907 1.21136 0.91043 0.97189 0.97754 1.20427 0.95992 1.03950 1.01945 1.20047 0.84249 0.94823 0.94214 1.83926 1.17172 1.52268 1.60080 1.21882 0.91738 1.14529 1.20810 0.87896 1.26591 0.95080 1.00437 0.99820 1.70186 1.04544 1.39368 1.41545 0.84538 0.78620 0.76391 0.76732 1.17327 1.19293 1.19420 1.21183 0.94977 1.04913 1.05088 1.21398 0.92987 0.96986 0.96846 1.23486 1.00269 0.90489 0.87453 0.88388 1.22182 1.04116 1.00634 0.94230 1.98703 1.92562 1.74062 1.52021 0.89964 0.90496 0.91643 0.83854 0.83114 0.86664 0.91777 0.86053 0.83959 0.89969 0.91222 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.58 71.23 0.68 -0.98 16 2 C -0.14 -2.93 4.85 -17.61 -0.09 -3.02 16 3 C -0.08 -1.88 9.37 23.61 0.22 -1.66 16 4 C -0.15 -4.49 5.07 -20.09 -0.10 -4.59 16 5 C -0.05 -1.76 9.78 22.50 0.22 -1.54 16 6 C -0.20 -8.56 9.98 22.35 0.22 -8.34 16 7 C 0.12 5.77 6.65 22.65 0.15 5.92 16 8 O -0.23 -13.61 9.75 -21.79 -0.21 -13.83 16 9 C -0.41 -23.79 9.48 67.92 0.64 -23.15 16 10 H 0.10 5.41 5.19 -2.91 -0.02 5.40 16 11 C -0.02 -1.21 5.49 84.83 0.47 -0.74 16 12 N -0.92 -55.98 13.67 21.61 0.30 -55.68 16 13 Si 1.02 42.32 29.55 68.60 2.03 44.35 16 14 H -0.25 -9.54 7.11 99.48 0.71 -8.84 16 15 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 16 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 17 C -0.24 -10.29 9.15 22.35 0.20 -10.08 16 18 C -0.06 -2.15 7.31 22.50 0.16 -1.99 16 19 C 0.03 0.60 2.64 29.85 0.08 0.68 16 20 H 0.10 2.78 4.81 -2.39 -0.01 2.77 16 21 C -0.15 -2.86 8.75 71.98 0.63 -2.23 16 22 Cl -0.20 -4.92 27.63 -2.72 -0.08 -5.00 16 23 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.08 1.01 8.05 -2.38 -0.02 0.99 16 25 H 0.06 1.04 7.19 -2.39 -0.02 1.03 16 26 H 0.14 2.59 8.03 -2.91 -0.02 2.57 16 27 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 28 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 29 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.12 5.22 5.62 -2.91 -0.02 5.21 16 31 H 0.14 3.86 4.64 -2.91 -0.01 3.85 16 32 H 0.08 1.43 6.42 -2.38 -0.02 1.41 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.28 7.88 -2.39 -0.02 1.27 16 Total: -1.00 -67.62 298.58 6.65 -60.97 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 1.11 Total: 20.89 kcal Atomic # 6 Polarization: -55.21 SS G_CDS: 3.50 Total: -51.71 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.30 Total: -55.68 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.21 Total: -13.83 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 17 Polarization: -4.92 SS G_CDS: -0.08 Total: -5.00 kcal Total: -67.62 6.65 -60.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309502484.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.345 kcal (2) G-P(sol) polarization free energy of solvation -67.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds